Wall clock time and date at job start Tue Mar 31 2020 22:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34223 * 116.99603 * 2 1 4 4 O 1.20828 * 120.00514 * 0.02562 * 3 2 1 5 5 C 1.50705 * 120.00002 * 180.02562 * 3 2 1 6 6 N 1.46897 * 109.47310 * 179.97438 * 5 3 2 7 7 C 1.47980 * 111.00326 * 293.95502 * 6 5 3 8 8 C 1.50466 * 112.72686 * 191.39442 * 7 6 5 9 9 C 1.54190 * 108.45117 * 93.81792 * 8 7 6 10 10 C 1.46063 * 112.36450 * 281.27999 * 9 8 7 11 11 C 1.54887 * 112.07210 * 182.09469 * 10 9 8 12 12 C 1.54422 * 101.84331 * 146.87341 * 11 10 9 13 13 N 1.46728 * 105.46954 * 334.42730 * 12 11 10 14 14 C 1.46499 * 124.32932 * 196.93529 * 13 12 11 15 15 C 1.53004 * 109.47198 * 90.00229 * 14 13 12 16 16 C 1.50700 * 109.47208 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00083 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00147 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00278 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47228 * 179.97438 * 20 18 16 22 22 H 1.48501 * 109.46793 * 300.00001 * 20 18 16 23 23 H 1.48500 * 109.47000 * 60.00094 * 20 18 16 24 24 C 1.34297 * 111.33695 * 17.20267 * 13 12 11 25 25 O 1.21284 * 124.90263 * 179.60758 * 24 13 12 26 26 C 1.54541 * 112.11490 * 60.86969 * 10 9 8 27 27 C 1.48043 * 110.99754 * 165.21576 * 6 5 3 28 28 H 1.09005 * 109.46990 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47193 * 299.99168 * 1 2 3 30 30 H 1.08996 * 109.47601 * 60.00241 * 1 2 3 31 31 H 1.08998 * 109.46619 * 59.99934 * 5 3 2 32 32 H 1.09002 * 109.46812 * 300.00432 * 5 3 2 33 33 H 1.09003 * 108.82648 * 70.55894 * 7 6 5 34 34 H 1.08994 * 108.82941 * 312.23931 * 7 6 5 35 35 H 1.09000 * 109.64147 * 334.13242 * 8 7 6 36 36 H 1.09003 * 109.81170 * 213.60470 * 8 7 6 37 37 H 1.08998 * 108.89805 * 160.53559 * 9 8 7 38 38 H 1.09002 * 108.90308 * 42.02617 * 9 8 7 39 39 H 1.09003 * 110.95227 * 28.73934 * 11 10 9 40 40 H 1.08998 * 110.99334 * 265.02883 * 11 10 9 41 41 H 1.08999 * 110.24220 * 215.42728 * 12 11 10 42 42 H 1.08998 * 110.31565 * 93.46405 * 12 11 10 43 43 H 1.09000 * 109.47602 * 330.00177 * 14 13 12 44 44 H 1.08998 * 109.47492 * 210.00165 * 14 13 12 45 45 H 1.08994 * 109.47074 * 60.00190 * 15 14 13 46 46 H 1.08998 * 109.47285 * 300.00026 * 15 14 13 47 47 H 0.97005 * 119.99661 * 359.97438 * 19 18 16 48 48 H 1.08997 * 109.60857 * 41.73531 * 26 10 9 49 49 H 1.09000 * 109.60455 * 162.24194 * 26 10 9 50 50 H 1.09007 * 108.78408 * 205.63130 * 27 6 5 51 51 H 1.08992 * 108.78973 * 323.83321 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2750 -0.0006 6 7 3.9827 2.6837 -0.0011 7 6 3.5947 3.3510 -1.2636 8 6 4.2327 4.7040 -1.4258 9 6 5.5315 4.5368 -2.2397 10 6 6.6350 4.0308 -1.4275 11 6 7.9493 3.9145 -2.2388 12 6 9.0135 4.2293 -1.1651 13 7 8.3276 5.0546 -0.1644 14 6 9.0109 5.8746 0.8391 15 6 9.2548 7.2751 0.2731 16 6 9.9571 8.1189 1.3055 17 1 10.2051 7.6982 2.2688 18 6 10.2830 9.4278 1.0204 19 7 9.9806 9.9402 -0.1525 20 14 11.1542 10.4735 2.2998 21 1 11.3908 11.8327 1.7506 22 1 10.3098 10.5712 3.5175 23 1 12.4550 9.8477 2.6483 24 6 6.9934 4.9575 -0.2823 25 8 6.1907 5.5307 0.4235 26 6 6.3275 2.6389 -0.8305 27 6 5.4148 2.8136 0.3510 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 3.9556 0.7810 -0.8908 32 1 3.9564 0.7806 0.8891 33 1 2.5112 3.4685 -1.2808 34 1 3.8913 2.7194 -2.1009 35 1 4.4657 5.1192 -0.4453 36 1 3.5526 5.3721 -1.9544 37 1 5.8140 5.5035 -2.6563 38 1 5.3480 3.8413 -3.0587 39 1 7.9773 4.6500 -3.0428 40 1 8.0780 2.9058 -2.6313 41 1 9.8424 4.7827 -1.6065 42 1 9.3759 3.3077 -0.7097 43 1 9.9655 5.4150 1.0953 44 1 8.3910 5.9468 1.7327 45 1 8.3003 7.7348 0.0170 46 1 9.8747 7.2030 -0.6205 47 1 9.5285 9.3971 -0.8170 48 1 5.8387 2.0186 -1.5817 49 1 7.2553 2.1656 -0.5091 50 1 5.5824 3.8012 0.7809 51 1 5.6619 2.0610 1.0997 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273931556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:03:02 Heat of formation + Delta-G solvation = -130.077192 kcal Electronic energy + Delta-G solvation = -31085.160144 eV Core-core repulsion = 26983.868794 eV Total energy + Delta-G solvation = -4101.291350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.62456 -41.45205 -39.20072 -37.63449 -37.48266 -36.40215 -35.25518 -33.62248 -32.09913 -30.68851 -29.57398 -28.28224 -26.86042 -26.16167 -26.09825 -24.14105 -23.28850 -22.22002 -21.89617 -20.71950 -19.72452 -19.05783 -18.74429 -17.77674 -17.63131 -17.51048 -17.28049 -16.84463 -16.37107 -16.00570 -15.67599 -15.38047 -15.17865 -14.84467 -14.77933 -14.67447 -14.60715 -14.29900 -14.10319 -13.96033 -13.64064 -13.53608 -13.33036 -13.14558 -13.00267 -12.92889 -12.69384 -12.51494 -12.39023 -12.30243 -12.12560 -12.04943 -11.95346 -11.90787 -11.76370 -11.55358 -11.34543 -11.09135 -10.90885 -10.60698 -10.28668 -9.58646 -9.12971 -8.76084 -6.47340 1.20745 1.50016 1.59597 1.61241 1.64660 1.78599 2.12055 2.54964 2.88576 3.10130 3.16121 3.46243 3.61260 3.79925 3.93254 4.01577 4.05473 4.15611 4.20613 4.22594 4.27975 4.31333 4.32960 4.37166 4.41196 4.48412 4.50374 4.63464 4.65881 4.70046 4.71210 4.72653 4.80053 4.86252 4.99266 4.99428 5.05695 5.08986 5.14895 5.21426 5.27589 5.34017 5.42746 5.46298 5.60612 5.92680 6.05476 6.09487 6.12987 6.30901 6.46937 6.81401 7.24457 7.36676 8.64244 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021852 B = 0.002405 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.014882 B =11637.644602 C =12041.495448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.457 3.543 4 O -0.527 6.527 5 C 0.068 3.932 6 N -0.556 5.556 7 C 0.074 3.926 8 C -0.141 4.141 9 C -0.094 4.094 10 C -0.078 4.078 11 C -0.114 4.114 12 C 0.092 3.908 13 N -0.620 5.620 14 C 0.150 3.850 15 C 0.009 3.991 16 C -0.619 4.619 17 H 0.058 0.942 18 C -0.041 4.041 19 N -0.935 5.935 20 Si 1.121 2.879 21 H -0.284 1.284 22 H -0.272 1.272 23 H -0.259 1.259 24 C 0.506 3.494 25 O -0.567 6.567 26 C -0.119 4.119 27 C 0.033 3.967 28 H 0.133 0.867 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.135 0.865 33 H 0.065 0.935 34 H 0.053 0.947 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.136 0.864 41 H 0.072 0.928 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.051 0.949 45 H -0.033 1.033 46 H -0.004 1.004 47 H 0.252 0.748 48 H 0.102 0.898 49 H 0.099 0.901 50 H 0.072 0.928 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 -27.776 -6.242 30.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.280 6.280 3 C 0.300 3.700 4 O -0.415 6.415 5 C -0.061 4.061 6 N -0.283 5.283 7 C -0.052 4.052 8 C -0.179 4.179 9 C -0.132 4.132 10 C -0.082 4.082 11 C -0.152 4.152 12 C -0.029 4.029 13 N -0.351 5.351 14 C 0.028 3.972 15 C -0.029 4.029 16 C -0.657 4.657 17 H 0.077 0.923 18 C -0.238 4.238 19 N -0.572 5.572 20 Si 0.941 3.059 21 H -0.209 1.209 22 H -0.198 1.198 23 H -0.184 1.184 24 C 0.295 3.705 25 O -0.447 6.447 26 C -0.158 4.158 27 C -0.093 4.093 28 H 0.151 0.849 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.154 0.846 41 H 0.090 0.910 42 H 0.120 0.880 43 H 0.108 0.892 44 H 0.070 0.930 45 H -0.015 1.015 46 H 0.015 0.985 47 H 0.061 0.939 48 H 0.120 0.880 49 H 0.117 0.883 50 H 0.090 0.910 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.598 -25.446 -5.202 28.051 hybrid contribution -0.753 -0.822 -0.799 1.372 sum -11.351 -26.269 -6.001 29.238 Atomic orbital electron populations 1.23485 0.75074 1.05563 1.02172 1.86480 1.24717 1.32808 1.84040 1.24245 0.92933 0.81111 0.71699 1.90663 1.67813 1.37417 1.45626 1.21735 0.86625 0.90999 1.06701 1.61299 1.18199 1.12408 1.36363 1.21758 1.00086 0.94394 0.89008 1.21566 0.96528 0.97449 1.02339 1.20385 0.93299 1.01424 0.98084 1.20494 0.97600 0.96131 0.93969 1.22932 0.90229 1.05729 0.96286 1.22373 0.96265 0.95317 0.88965 1.48612 1.07074 1.45425 1.34014 1.21154 0.96450 0.90054 0.89577 1.19367 0.93646 0.93738 0.96120 1.22371 1.41603 0.99736 1.02006 0.92349 1.27581 0.96781 0.98346 1.01077 1.70926 1.40033 1.39792 1.06425 0.82905 0.76227 0.74367 0.72392 1.20905 1.19773 1.18405 1.21637 0.82001 0.81204 0.85631 1.90581 1.53435 1.50379 1.50331 1.21968 1.01632 0.93279 0.98905 1.22322 0.84339 1.04610 0.98017 0.84904 0.92597 0.92220 0.87730 0.84718 0.91638 0.92854 0.90895 0.91641 0.93661 0.87833 0.90475 0.84632 0.90977 0.88035 0.89238 0.93012 1.01483 0.98549 0.93906 0.87959 0.88292 0.90975 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.04 10.57 -51.34 -0.54 -6.58 16 3 C 0.46 9.39 7.73 71.24 0.55 9.94 16 4 O -0.53 -15.05 14.08 21.96 0.31 -14.74 16 5 C 0.07 1.05 5.49 85.56 0.47 1.52 16 6 N -0.56 -12.84 4.41 -904.97 -3.99 -16.84 16 7 C 0.07 1.74 4.50 85.28 0.38 2.12 16 8 C -0.14 -3.98 5.55 30.18 0.17 -3.82 16 9 C -0.09 -2.20 4.14 28.87 0.12 -2.08 16 10 C -0.08 -1.80 0.57 -53.60 -0.03 -1.83 16 11 C -0.11 -1.97 6.03 31.72 0.19 -1.77 16 12 C 0.09 2.11 7.07 86.82 0.61 2.73 16 13 N -0.62 -21.56 2.93 -817.92 -2.39 -23.96 16 14 C 0.15 6.44 5.87 86.38 0.51 6.95 16 15 C 0.01 0.51 4.61 29.85 0.14 0.64 16 16 C -0.62 -36.40 9.11 25.60 0.23 -36.17 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C -0.04 -2.43 5.46 84.65 0.46 -1.97 16 19 N -0.93 -60.18 13.65 21.45 0.29 -59.89 16 20 Si 1.12 51.31 29.90 68.60 2.05 53.36 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 24 C 0.51 17.99 5.69 88.02 0.50 18.49 16 25 O -0.57 -25.78 12.89 -3.04 -0.04 -25.82 16 26 C -0.12 -1.93 4.39 30.25 0.13 -1.80 16 27 C 0.03 0.75 4.99 85.22 0.43 1.17 16 28 H 0.13 0.69 8.14 -2.38 -0.02 0.67 16 29 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.06 0.76 8.13 -2.39 -0.02 0.74 16 31 H 0.11 1.00 7.82 -2.39 -0.02 0.98 16 32 H 0.14 1.54 7.67 -2.39 -0.02 1.52 16 33 H 0.07 1.80 6.11 -2.39 -0.01 1.79 16 34 H 0.05 0.93 6.39 -2.39 -0.02 0.92 16 35 H 0.07 2.74 4.61 -2.39 -0.01 2.73 16 36 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.04 1.23 8.12 -2.39 -0.02 1.21 16 38 H 0.10 1.66 7.51 -2.39 -0.02 1.64 16 39 H 0.08 1.43 7.97 -2.39 -0.02 1.41 16 40 H 0.14 1.12 7.85 -2.39 -0.02 1.10 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 42 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.05 2.42 7.91 -2.39 -0.02 2.40 16 45 H -0.03 -2.09 8.01 -2.39 -0.02 -2.11 16 46 H 0.00 -0.21 8.01 -2.39 -0.02 -0.23 16 47 H 0.25 16.58 7.22 -92.70 -0.67 15.92 16 48 H 0.10 1.11 6.87 -2.39 -0.02 1.10 16 49 H 0.10 1.22 7.72 -2.39 -0.02 1.20 16 50 H 0.07 2.39 3.83 -2.38 -0.01 2.38 16 51 H 0.09 1.58 7.56 -2.39 -0.02 1.56 16 Total: -1.00 -85.33 387.40 2.77 -82.56 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 1.02 Total: 16.20 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: 6.06 Total: -4.30 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -6.09 Total: -100.68 kcal Atomic # 8 Polarization: -46.87 SS G_CDS: -0.27 Total: -47.14 kcal Atomic # 14 Polarization: 51.31 SS G_CDS: 2.05 Total: 53.36 kcal Total: -85.33 2.77 -82.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273931556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.517 kcal (2) G-P(sol) polarization free energy of solvation -85.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds