Wall clock time and date at job start Tue Mar 31 2020 22:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00059 * 2 1 4 4 O 1.20825 * 119.99981 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99995 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46918 * 180.02562 * 5 3 2 7 7 N 1.46903 * 109.46937 * 180.02562 * 6 5 3 8 8 C 1.46981 * 111.00159 * 45.60297 * 7 6 5 9 9 C 1.53035 * 109.47608 * 184.60527 * 8 7 6 10 10 C 1.53127 * 109.38613 * 300.23238 * 9 8 7 11 11 C 1.53263 * 109.06887 * 58.25611 * 10 9 8 12 12 C 1.45971 * 110.99934 * 169.99939 * 7 6 5 13 13 C 1.53992 * 110.67381 * 299.47183 * 12 7 6 14 14 C 1.51432 * 104.05236 * 94.02984 * 13 12 7 15 15 O 1.21283 * 124.94013 * 195.70837 * 14 13 12 16 16 N 1.34498 * 110.11011 * 15.72512 * 14 13 12 17 17 C 1.46506 * 124.34697 * 180.36393 * 16 14 13 18 18 C 1.52999 * 109.46967 * 90.03169 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00047 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99827 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00426 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47050 * 89.99745 * 23 21 19 25 25 H 1.48494 * 109.47484 * 209.99709 * 23 21 19 26 26 H 1.48504 * 109.47111 * 330.00419 * 23 21 19 27 27 C 1.46919 * 111.30198 * 0.63421 * 16 14 13 28 28 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47178 * 299.99895 * 1 2 3 30 30 H 1.09001 * 109.47392 * 59.99661 * 1 2 3 31 31 H 1.09003 * 109.46721 * 60.00753 * 5 3 2 32 32 H 1.09000 * 109.47113 * 300.00623 * 5 3 2 33 33 H 1.08998 * 109.47399 * 60.00015 * 6 5 3 34 34 H 1.09009 * 109.47022 * 299.99909 * 6 5 3 35 35 H 1.09001 * 109.47418 * 304.61100 * 8 7 6 36 36 H 1.09001 * 109.47418 * 64.60636 * 8 7 6 37 37 H 1.09003 * 109.48201 * 60.20682 * 9 8 7 38 38 H 1.09000 * 109.48712 * 180.24174 * 9 8 7 39 39 H 1.08993 * 109.53806 * 178.13274 * 10 9 8 40 40 H 1.08999 * 109.53691 * 298.29672 * 10 9 8 41 41 H 1.08994 * 109.48868 * 183.58503 * 11 10 9 42 42 H 1.08996 * 109.48892 * 63.50604 * 11 10 9 43 43 H 1.09002 * 110.50656 * 335.38649 * 13 12 7 44 44 H 1.08994 * 110.51470 * 212.67569 * 13 12 7 45 45 H 1.08994 * 109.46947 * 210.02587 * 17 16 14 46 46 H 1.08997 * 109.47271 * 330.03104 * 17 16 14 47 47 H 1.09011 * 109.46854 * 299.99834 * 18 17 16 48 48 H 1.09005 * 109.47366 * 59.99260 * 18 17 16 49 49 H 0.97003 * 120.00835 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.26727 * 102.27447 * 27 16 14 51 51 H 1.08997 * 110.26753 * 224.34325 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4671 2.8190 0.0011 8 6 6.0433 1.8882 -0.9798 9 6 7.5696 1.9126 -0.8709 10 6 8.0761 3.3313 -1.1459 11 6 7.4349 4.2954 -0.1418 12 6 5.9192 4.1866 -0.2351 13 6 5.4250 4.6942 -1.6024 14 6 4.1342 5.4180 -1.2813 15 8 3.2925 5.7318 -2.0962 16 7 4.0573 5.6625 0.0390 17 6 2.9338 6.3412 0.6899 18 6 1.8897 5.3066 1.1144 19 6 0.7338 6.0047 1.7834 20 1 0.7432 7.0788 1.8950 21 6 -0.3356 5.2721 2.2529 22 7 -0.3473 3.9641 2.1166 23 14 -1.7682 6.1373 3.0828 24 1 -2.7844 6.5015 2.0630 25 1 -2.3787 5.2311 4.0882 26 1 -1.2803 7.3675 3.7566 27 6 5.2475 5.1672 0.7438 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9563 0.7806 -0.8893 32 1 3.9557 0.7808 0.8908 33 1 3.6100 3.2360 0.8910 34 1 3.6106 3.2364 -0.8890 35 1 5.6809 0.8797 -0.7802 36 1 5.7460 2.1889 -1.9844 37 1 7.8674 1.6083 0.1326 38 1 7.9973 1.2256 -1.6011 39 1 9.1602 3.3588 -1.0365 40 1 7.8045 3.6251 -2.1598 41 1 7.7411 5.3160 -0.3712 42 1 7.7566 4.0368 0.8670 43 1 5.2366 3.8573 -2.2750 44 1 6.1496 5.3811 -2.0395 45 1 3.2928 6.8767 1.5687 46 1 2.4829 7.0475 -0.0071 47 1 1.5308 4.7709 0.2355 48 1 2.3407 4.6001 1.8114 49 1 -1.0995 3.4486 2.4473 50 1 5.9197 5.9932 0.9760 51 1 4.9567 4.6477 1.6568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273961011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:48 Heat of formation + Delta-G solvation = -108.759336 kcal Electronic energy + Delta-G solvation = -32566.904937 eV Core-core repulsion = 28466.537998 eV Total energy + Delta-G solvation = -4100.366939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36654 -39.77895 -38.20450 -36.04460 -35.58626 -34.37919 -33.56380 -32.06629 -30.37610 -29.64566 -28.23890 -27.30387 -26.18798 -25.07655 -24.13741 -22.51858 -21.64651 -21.03670 -19.96930 -19.17733 -18.40663 -17.40847 -16.75407 -16.32156 -16.11330 -15.86358 -15.69978 -15.34884 -14.99540 -14.68253 -14.45295 -14.34888 -14.02905 -13.60258 -13.48909 -13.35188 -12.86801 -12.76606 -12.49370 -12.44563 -12.31095 -12.09252 -12.00171 -11.83888 -11.62207 -11.48110 -11.41798 -11.23834 -11.06042 -10.87758 -10.67145 -10.63564 -10.42678 -10.36400 -10.23952 -9.86446 -9.79122 -9.69653 -9.31397 -8.96970 -8.27665 -8.19641 -7.92942 -5.82500 -3.87461 2.85424 3.03898 3.08963 3.38164 3.43921 3.46277 3.61449 3.83782 4.37687 4.47410 4.56444 4.67887 4.77214 4.86598 4.95894 5.06398 5.15360 5.17514 5.27129 5.33478 5.42063 5.49853 5.51850 5.53657 5.57607 5.61235 5.65629 5.68735 5.75482 5.79416 5.82908 5.88606 5.93387 5.98268 5.99802 6.07379 6.14264 6.26420 6.41117 6.55825 6.91098 6.95022 6.99039 7.09861 7.11827 7.62259 7.83447 8.02455 8.15632 8.39734 8.50514 8.73650 9.18054 9.74006 11.24536 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004779 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.967118 B = 5857.033965 C = 7692.295195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.374 6.374 3 C 0.430 3.570 4 O -0.436 6.436 5 C -0.109 4.109 6 C 0.057 3.943 7 N -0.517 5.517 8 C 0.040 3.960 9 C -0.115 4.115 10 C -0.121 4.121 11 C -0.097 4.097 12 C 0.108 3.892 13 C -0.187 4.187 14 C 0.512 3.488 15 O -0.536 6.536 16 N -0.609 5.609 17 C 0.125 3.875 18 C 0.020 3.980 19 C -0.526 4.526 20 H 0.051 0.949 21 C 0.064 3.936 22 N -0.868 5.868 23 Si 0.884 3.116 24 H -0.282 1.282 25 H -0.289 1.289 26 H -0.276 1.276 27 C 0.109 3.891 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.062 0.938 46 H 0.067 0.933 47 H 0.034 0.966 48 H 0.013 0.987 49 H 0.254 0.746 50 H 0.073 0.927 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.681 -8.259 -4.691 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.292 6.292 3 C 0.268 3.732 4 O -0.317 6.317 5 C -0.147 4.147 6 C -0.069 4.069 7 N -0.241 5.241 8 C -0.087 4.087 9 C -0.153 4.153 10 C -0.159 4.159 11 C -0.136 4.136 12 C 0.017 3.983 13 C -0.229 4.229 14 C 0.299 3.701 15 O -0.413 6.413 16 N -0.342 5.342 17 C 0.005 3.995 18 C -0.018 4.018 19 C -0.565 4.565 20 H 0.070 0.930 21 C -0.138 4.138 22 N -0.506 5.506 23 Si 0.713 3.287 24 H -0.209 1.209 25 H -0.215 1.215 26 H -0.201 1.201 27 C -0.015 4.015 28 H 0.109 0.891 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.114 0.886 32 H 0.125 0.875 33 H 0.124 0.876 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.081 0.919 46 H 0.086 0.914 47 H 0.052 0.948 48 H 0.032 0.968 49 H 0.064 0.936 50 H 0.092 0.908 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.966 -8.014 -4.555 19.309 hybrid contribution -1.465 0.642 -0.241 1.618 sum 15.501 -7.371 -4.796 17.822 Atomic orbital electron populations 1.23146 0.76551 1.02395 1.03266 1.86386 1.23292 1.34158 1.85404 1.23545 0.91832 0.82125 0.75653 1.91045 1.66030 1.34748 1.39841 1.21385 0.88768 0.99374 1.05195 1.22196 0.85873 0.94293 1.04580 1.61924 1.08193 1.04808 1.49136 1.22339 0.95194 0.97229 0.93981 1.21574 0.94527 0.96748 1.02442 1.21615 0.99918 0.95187 0.99193 1.21427 0.91593 0.99707 1.00826 1.21357 0.95649 0.88516 0.92773 1.23055 0.97857 1.02093 0.99943 1.20627 0.87437 0.79294 0.82775 1.90712 1.44648 1.54485 1.51465 1.48611 1.20063 1.58113 1.07451 1.21873 0.85549 0.96403 0.95662 1.19371 0.91846 0.93409 0.97195 1.21018 1.03694 0.93226 1.38582 0.93047 1.24946 0.97918 0.94825 0.96158 1.70078 1.30328 1.04715 1.45448 0.86735 0.83248 0.79483 0.79280 1.20879 1.21457 1.20061 1.22114 0.86922 0.95991 0.96447 0.89140 0.91152 0.92365 0.88588 0.87491 0.87635 0.93208 0.89785 0.94414 0.90880 0.91645 0.91636 0.92050 0.90993 0.90335 0.88610 0.87940 0.91928 0.91415 0.94813 0.96827 0.93636 0.90845 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 10.56 101.05 1.07 1.68 16 2 O -0.37 -6.19 10.56 -39.26 -0.41 -6.60 16 3 C 0.43 7.91 7.96 36.01 0.29 8.19 16 4 O -0.44 -10.31 15.13 -18.75 -0.28 -10.59 16 5 C -0.11 -1.54 5.05 -27.88 -0.14 -1.68 16 6 C 0.06 0.92 3.20 -3.82 -0.01 0.91 16 7 N -0.52 -6.31 4.62 -218.81 -1.01 -7.32 16 8 C 0.04 0.39 4.58 -3.76 -0.02 0.37 16 9 C -0.12 -0.88 6.07 -26.65 -0.16 -1.04 16 10 C -0.12 -0.90 5.81 -26.53 -0.15 -1.06 16 11 C -0.10 -0.83 4.65 -26.98 -0.13 -0.96 16 12 C 0.11 1.27 0.72 -131.46 -0.09 1.18 16 13 C -0.19 -2.54 4.44 -27.01 -0.12 -2.66 16 14 C 0.51 9.82 6.04 -10.75 -0.06 9.75 16 15 O -0.54 -12.86 17.59 5.55 0.10 -12.76 16 16 N -0.61 -11.22 2.26 -172.51 -0.39 -11.61 16 17 C 0.12 2.74 5.88 -4.04 -0.02 2.71 16 18 C 0.02 0.52 4.82 -27.89 -0.13 0.39 16 19 C -0.53 -15.26 9.11 -34.44 -0.31 -15.57 16 20 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 21 C 0.06 1.88 5.46 -17.82 -0.10 1.78 16 22 N -0.87 -26.17 13.29 55.43 0.74 -25.44 16 23 Si 0.88 22.20 29.54 -169.99 -5.02 17.18 16 24 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.11 1.52 5.75 -3.30 -0.02 1.50 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 30 H 0.06 0.91 8.13 -51.93 -0.42 0.49 16 31 H 0.10 1.09 6.23 -51.93 -0.32 0.77 16 32 H 0.11 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.11 2.07 5.23 -51.93 -0.27 1.79 16 34 H 0.05 0.95 5.34 -51.92 -0.28 0.67 16 35 H 0.08 0.75 5.90 -51.93 -0.31 0.44 16 36 H 0.04 0.39 6.19 -51.93 -0.32 0.07 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.47 7.58 -51.93 -0.39 0.08 16 41 H 0.07 0.55 8.06 -51.93 -0.42 0.13 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.10 1.30 5.81 -51.93 -0.30 1.00 16 44 H 0.10 1.17 7.80 -51.93 -0.41 0.77 16 45 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 46 H 0.07 1.59 7.92 -51.93 -0.41 1.18 16 47 H 0.03 1.03 7.53 -51.92 -0.39 0.64 16 48 H 0.01 0.38 7.12 -51.93 -0.37 0.01 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.07 0.85 7.86 -51.93 -0.41 0.44 16 51 H 0.09 1.34 7.37 -51.93 -0.38 0.96 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -35.79 389.66 -8.87 -44.66 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.33 Total: 1.10 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -0.13 Total: 5.49 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.66 Total: -44.36 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -0.60 Total: -29.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.79 -8.87 -44.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273961011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.098 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds