Wall clock time and date at job start Tue Mar 31 2020 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34231 * 117.00059 * 2 1 4 4 O 1.20825 * 119.99981 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99995 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46918 * 180.02562 * 5 3 2 7 7 N 1.46903 * 109.46937 * 180.02562 * 6 5 3 8 8 C 1.46981 * 111.00159 * 45.60297 * 7 6 5 9 9 C 1.53035 * 109.47608 * 184.60527 * 8 7 6 10 10 C 1.53127 * 109.38613 * 300.23238 * 9 8 7 11 11 C 1.53263 * 109.06887 * 58.25611 * 10 9 8 12 12 C 1.45971 * 110.99934 * 169.99939 * 7 6 5 13 13 C 1.53992 * 110.67381 * 299.47183 * 12 7 6 14 14 C 1.51432 * 104.05236 * 94.02984 * 13 12 7 15 15 O 1.21283 * 124.94013 * 195.70837 * 14 13 12 16 16 N 1.34498 * 110.11011 * 15.72512 * 14 13 12 17 17 C 1.46506 * 124.34697 * 180.36393 * 16 14 13 18 18 C 1.52999 * 109.46967 * 90.03169 * 17 16 14 19 19 C 1.50696 * 109.47088 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00047 * 359.97438 * 19 18 17 21 21 C 1.37876 * 119.99827 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00426 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00095 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47050 * 89.99745 * 23 21 19 25 25 H 1.48494 * 109.47484 * 209.99709 * 23 21 19 26 26 H 1.48504 * 109.47111 * 330.00419 * 23 21 19 27 27 C 1.46919 * 111.30198 * 0.63421 * 16 14 13 28 28 H 1.09003 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47178 * 299.99895 * 1 2 3 30 30 H 1.09001 * 109.47392 * 59.99661 * 1 2 3 31 31 H 1.09003 * 109.46721 * 60.00753 * 5 3 2 32 32 H 1.09000 * 109.47113 * 300.00623 * 5 3 2 33 33 H 1.08998 * 109.47399 * 60.00015 * 6 5 3 34 34 H 1.09009 * 109.47022 * 299.99909 * 6 5 3 35 35 H 1.09001 * 109.47418 * 304.61100 * 8 7 6 36 36 H 1.09001 * 109.47418 * 64.60636 * 8 7 6 37 37 H 1.09003 * 109.48201 * 60.20682 * 9 8 7 38 38 H 1.09000 * 109.48712 * 180.24174 * 9 8 7 39 39 H 1.08993 * 109.53806 * 178.13274 * 10 9 8 40 40 H 1.08999 * 109.53691 * 298.29672 * 10 9 8 41 41 H 1.08994 * 109.48868 * 183.58503 * 11 10 9 42 42 H 1.08996 * 109.48892 * 63.50604 * 11 10 9 43 43 H 1.09002 * 110.50656 * 335.38649 * 13 12 7 44 44 H 1.08994 * 110.51470 * 212.67569 * 13 12 7 45 45 H 1.08994 * 109.46947 * 210.02587 * 17 16 14 46 46 H 1.08997 * 109.47271 * 330.03104 * 17 16 14 47 47 H 1.09011 * 109.46854 * 299.99834 * 18 17 16 48 48 H 1.09005 * 109.47366 * 59.99260 * 18 17 16 49 49 H 0.97003 * 120.00835 * 179.97438 * 22 21 19 50 50 H 1.09003 * 110.26727 * 102.27447 * 27 16 14 51 51 H 1.08997 * 110.26753 * 224.34325 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0001 2.7421 0.0011 7 7 5.4671 2.8190 0.0011 8 6 6.0433 1.8882 -0.9798 9 6 7.5696 1.9126 -0.8709 10 6 8.0761 3.3313 -1.1459 11 6 7.4349 4.2954 -0.1418 12 6 5.9192 4.1866 -0.2351 13 6 5.4250 4.6942 -1.6024 14 6 4.1342 5.4180 -1.2813 15 8 3.2925 5.7318 -2.0962 16 7 4.0573 5.6625 0.0390 17 6 2.9338 6.3412 0.6899 18 6 1.8897 5.3066 1.1144 19 6 0.7338 6.0047 1.7834 20 1 0.7432 7.0788 1.8950 21 6 -0.3356 5.2721 2.2529 22 7 -0.3473 3.9641 2.1166 23 14 -1.7682 6.1373 3.0828 24 1 -2.7844 6.5015 2.0630 25 1 -2.3787 5.2311 4.0882 26 1 -1.2803 7.3675 3.7566 27 6 5.2475 5.1672 0.7438 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 3.9563 0.7806 -0.8893 32 1 3.9557 0.7808 0.8908 33 1 3.6100 3.2360 0.8910 34 1 3.6106 3.2364 -0.8890 35 1 5.6809 0.8797 -0.7802 36 1 5.7460 2.1889 -1.9844 37 1 7.8674 1.6083 0.1326 38 1 7.9973 1.2256 -1.6011 39 1 9.1602 3.3588 -1.0365 40 1 7.8045 3.6251 -2.1598 41 1 7.7411 5.3160 -0.3712 42 1 7.7566 4.0368 0.8670 43 1 5.2366 3.8573 -2.2750 44 1 6.1496 5.3811 -2.0395 45 1 3.2928 6.8767 1.5687 46 1 2.4829 7.0475 -0.0071 47 1 1.5308 4.7709 0.2355 48 1 2.3407 4.6001 1.8114 49 1 -1.0995 3.4486 2.4473 50 1 5.9197 5.9932 0.9760 51 1 4.9567 4.6477 1.6568 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273961011.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:47 Heat of formation + Delta-G solvation = -133.908512 kcal Electronic energy + Delta-G solvation = -32567.995487 eV Core-core repulsion = 28466.537998 eV Total energy + Delta-G solvation = -4101.457489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.55209 -41.26411 -39.50997 -37.50263 -37.13277 -35.58274 -35.27634 -33.68935 -31.50193 -31.20948 -29.56934 -28.56557 -27.52497 -26.44995 -25.60601 -23.60723 -23.19666 -22.32507 -21.27624 -20.53613 -19.53090 -18.80987 -18.54382 -17.86831 -17.60135 -17.22814 -17.16965 -16.55659 -16.43300 -16.21119 -15.88456 -15.56148 -15.15213 -14.79309 -14.65794 -14.51422 -14.43704 -14.27658 -13.92479 -13.81156 -13.68722 -13.51218 -13.22669 -13.15784 -12.90766 -12.84501 -12.76290 -12.60927 -12.55709 -12.27276 -12.25317 -11.90516 -11.80709 -11.71251 -11.41242 -11.36734 -11.31432 -11.11853 -11.08400 -10.78707 -10.49665 -9.56686 -9.33499 -8.08571 -6.23911 1.35309 1.37879 1.38096 1.47509 1.57349 1.76215 2.14503 2.43316 2.79449 3.19111 3.30549 3.41016 3.66572 3.80317 3.84269 3.97151 4.06163 4.16451 4.28359 4.29142 4.35595 4.36277 4.37930 4.40232 4.44354 4.52363 4.58071 4.66827 4.68530 4.73245 4.74315 4.81263 4.93459 4.96085 5.02944 5.05274 5.18378 5.22654 5.35417 5.40900 5.42205 5.51779 5.53107 5.62801 5.68459 5.92365 5.98169 6.15893 6.23994 6.30489 6.88171 6.93820 7.19678 7.42427 8.97454 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004779 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.967118 B = 5857.033965 C = 7692.295195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.365 6.365 3 C 0.427 3.573 4 O -0.499 6.499 5 C -0.100 4.100 6 C 0.074 3.926 7 N -0.509 5.509 8 C 0.033 3.967 9 C -0.109 4.109 10 C -0.120 4.120 11 C -0.091 4.091 12 C 0.116 3.884 13 C -0.170 4.170 14 C 0.497 3.503 15 O -0.599 6.599 16 N -0.612 5.612 17 C 0.137 3.863 18 C 0.046 3.954 19 C -0.556 4.556 20 H 0.056 0.944 21 C 0.010 3.990 22 N -0.896 5.896 23 Si 0.957 3.043 24 H -0.282 1.282 25 H -0.280 1.280 26 H -0.261 1.261 27 C 0.102 3.898 28 H 0.139 0.861 29 H 0.041 0.959 30 H 0.046 0.954 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.061 0.939 34 H 0.011 0.989 35 H 0.095 0.905 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.134 0.866 45 H 0.086 0.914 46 H 0.045 0.955 47 H -0.018 1.018 48 H -0.007 1.007 49 H 0.255 0.745 50 H 0.109 0.891 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.999 -9.158 -4.222 23.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.282 6.282 3 C 0.268 3.732 4 O -0.384 6.384 5 C -0.137 4.137 6 C -0.054 4.054 7 N -0.233 5.233 8 C -0.094 4.094 9 C -0.147 4.147 10 C -0.158 4.158 11 C -0.129 4.129 12 C 0.025 3.975 13 C -0.212 4.212 14 C 0.287 3.713 15 O -0.481 6.481 16 N -0.343 5.343 17 C 0.015 3.985 18 C 0.008 3.992 19 C -0.594 4.594 20 H 0.074 0.926 21 C -0.191 4.191 22 N -0.534 5.534 23 Si 0.782 3.218 24 H -0.208 1.208 25 H -0.205 1.205 26 H -0.185 1.185 27 C -0.020 4.020 28 H 0.157 0.843 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.029 0.971 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.095 0.905 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.152 0.848 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.000 1.000 48 H 0.011 0.989 49 H 0.064 0.936 50 H 0.127 0.873 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.354 -8.949 -4.062 22.602 hybrid contribution -2.535 0.840 -0.390 2.699 sum 17.818 -8.110 -4.452 20.077 Atomic orbital electron populations 1.23298 0.75920 1.04877 1.01322 1.86401 1.23944 1.33120 1.84761 1.24494 0.93531 0.81609 0.73567 1.91048 1.67660 1.36792 1.42944 1.21490 0.85602 0.98701 1.07926 1.21786 0.88386 0.94688 1.00585 1.61985 1.05293 1.05760 1.50252 1.22550 0.97074 0.96860 0.92868 1.21572 0.92199 0.97605 1.03328 1.21645 1.01118 0.94367 0.98657 1.21474 0.87974 1.01421 1.02030 1.21530 0.97974 0.87546 0.90469 1.23057 0.94921 1.01936 1.01264 1.21693 0.88734 0.78574 0.82329 1.90658 1.47328 1.56980 1.53088 1.48628 1.20300 1.57488 1.07876 1.21419 0.86069 0.94891 0.96085 1.18976 0.92593 0.93415 0.94202 1.21458 1.04994 0.93687 1.39266 0.92557 1.25872 1.00874 0.95606 0.96715 1.70263 1.31069 1.06244 1.45803 0.85588 0.79239 0.78781 0.78180 1.20798 1.20520 1.18521 1.22484 0.85640 0.97722 0.96148 0.84298 0.94027 0.93468 0.85014 0.84986 0.92033 0.97079 0.88649 0.94879 0.90515 0.89728 0.89420 0.92035 0.89141 0.89341 0.88470 0.84838 0.89575 0.93622 0.99966 0.98869 0.93648 0.87333 0.90526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 10.56 113.37 1.20 2.43 16 2 O -0.36 -12.26 10.56 -51.42 -0.54 -12.81 16 3 C 0.43 16.52 7.96 71.24 0.57 17.08 16 4 O -0.50 -25.80 15.13 21.97 0.33 -25.47 16 5 C -0.10 -2.81 5.05 29.85 0.15 -2.66 16 6 C 0.07 2.45 3.20 86.30 0.28 2.72 16 7 N -0.51 -11.72 4.62 -846.18 -3.91 -15.63 16 8 C 0.03 0.55 4.58 86.30 0.40 0.94 16 9 C -0.11 -1.18 6.07 30.65 0.19 -1.00 16 10 C -0.12 -1.19 5.81 30.72 0.18 -1.02 16 11 C -0.09 -1.15 4.65 30.43 0.14 -1.01 16 12 C 0.12 2.50 0.72 4.12 0.00 2.51 16 13 C -0.17 -4.44 4.44 30.42 0.14 -4.30 16 14 C 0.50 19.97 6.04 87.93 0.53 20.51 16 15 O -0.60 -30.89 17.59 -3.04 -0.05 -30.95 16 16 N -0.61 -23.52 2.26 -818.25 -1.85 -25.37 16 17 C 0.14 6.38 5.88 86.38 0.51 6.89 16 18 C 0.05 2.65 4.82 29.85 0.14 2.79 16 19 C -0.56 -33.81 9.11 25.60 0.23 -33.58 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 21 C 0.01 0.59 5.46 84.65 0.46 1.05 16 22 N -0.90 -56.90 13.29 21.45 0.28 -56.61 16 23 Si 0.96 46.83 29.54 68.60 2.03 48.85 16 24 H -0.28 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 26 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.10 2.78 5.75 86.63 0.50 3.28 16 28 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.04 1.54 8.13 -2.39 -0.02 1.52 16 30 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.13 2.77 6.23 -2.39 -0.01 2.76 16 32 H 0.13 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.06 2.60 5.23 -2.39 -0.01 2.59 16 34 H 0.01 0.45 5.34 -2.38 -0.01 0.44 16 35 H 0.10 1.36 5.90 -2.39 -0.01 1.35 16 36 H 0.03 0.60 6.19 -2.39 -0.01 0.59 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.65 16 39 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.65 7.58 -2.39 -0.02 0.63 16 41 H 0.09 0.89 8.06 -2.39 -0.02 0.87 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 2.56 5.81 -2.39 -0.01 2.55 16 44 H 0.13 2.67 7.80 -2.39 -0.02 2.65 16 45 H 0.09 3.55 8.14 -2.39 -0.02 3.53 16 46 H 0.05 2.30 7.92 -2.39 -0.02 2.28 16 47 H -0.02 -1.23 7.53 -2.38 -0.02 -1.24 16 48 H -0.01 -0.42 7.12 -2.38 -0.02 -0.44 16 49 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 50 H 0.11 2.21 7.86 -2.39 -0.02 2.19 16 51 H 0.08 2.32 7.37 -2.39 -0.02 2.30 16 Total: -1.00 -88.06 389.66 2.82 -85.24 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.92 Total: 16.11 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 5.61 Total: 16.63 kcal Atomic # 7 Polarization: -92.13 SS G_CDS: -5.47 Total: -97.61 kcal Atomic # 8 Polarization: -68.96 SS G_CDS: -0.26 Total: -69.22 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.85 kcal Total: -88.06 2.82 -85.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273961011.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.670 kcal (2) G-P(sol) polarization free energy of solvation -88.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds