Wall clock time and date at job start Tue Mar 31 2020 20:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47375 * 2 1 4 4 C 1.34221 * 117.00632 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00457 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47100 * 60.00391 * 6 4 3 8 8 C 1.52995 * 109.47370 * 300.00213 * 6 4 3 9 9 N 1.46503 * 109.47298 * 179.97438 * 6 4 3 10 10 C 1.34778 * 119.99988 * 205.00218 * 9 6 4 11 11 O 1.21282 * 119.99797 * 359.97438 * 10 9 6 12 12 C 1.50697 * 119.99954 * 180.02562 * 10 9 6 13 13 H 1.08999 * 115.56917 * 34.27541 * 12 10 9 14 14 C 1.53056 * 117.50092 * 248.55832 * 12 10 9 15 15 C 1.52732 * 117.50532 * 179.97438 * 12 10 9 16 16 C 1.53225 * 117.83341 * 359.74230 * 15 12 10 17 17 C 1.53256 * 108.62861 * 163.01900 * 16 15 12 18 18 N 1.46812 * 109.44716 * 55.56657 * 17 16 15 19 19 C 1.46908 * 110.99702 * 170.80628 * 18 17 16 20 20 C 1.50701 * 109.47361 * 65.07317 * 19 18 17 21 21 H 1.07996 * 119.99863 * 354.94343 * 20 19 18 22 22 C 1.37870 * 119.99987 * 174.94622 * 20 19 18 23 23 N 1.31517 * 120.00092 * 180.27726 * 22 20 19 24 24 Si 1.86806 * 120.00137 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47108 * 89.99938 * 24 22 20 26 26 H 1.48497 * 109.47194 * 210.00321 * 24 22 20 27 27 H 1.48501 * 109.47062 * 330.00286 * 24 22 20 28 28 C 1.46813 * 111.58671 * 295.17991 * 18 17 16 29 29 C 1.53209 * 117.84972 * 215.21206 * 15 12 10 30 30 H 1.09002 * 109.47158 * 59.99943 * 1 2 3 31 31 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46968 * 299.99649 * 1 2 3 33 33 H 1.09007 * 109.47305 * 240.00587 * 2 1 3 34 34 H 1.08997 * 109.47296 * 120.00543 * 2 1 3 35 35 H 1.08998 * 109.47411 * 179.97438 * 8 6 4 36 36 H 1.09000 * 109.47154 * 300.00145 * 8 6 4 37 37 H 1.09000 * 109.47484 * 59.99519 * 8 6 4 38 38 H 0.96997 * 120.00164 * 25.00021 * 9 6 4 39 39 H 1.09005 * 117.50773 * 145.05664 * 14 12 10 40 40 H 1.08998 * 117.51047 * 359.97438 * 14 12 10 41 41 H 1.08995 * 109.61488 * 43.27840 * 16 15 12 42 42 H 1.09002 * 109.75226 * 282.84462 * 16 15 12 43 43 H 1.08998 * 109.47247 * 295.57250 * 17 16 15 44 44 H 1.08998 * 109.47168 * 175.55651 * 17 16 15 45 45 H 1.09005 * 109.46815 * 305.06995 * 19 18 17 46 46 H 1.08998 * 109.46820 * 185.07609 * 19 18 17 47 47 H 0.96998 * 119.99741 * 179.72404 * 23 22 20 48 48 H 1.08990 * 109.47616 * 184.81337 * 28 18 17 49 49 H 1.09000 * 109.47247 * 304.83224 * 28 18 17 50 50 H 1.09009 * 109.60370 * 316.72454 * 29 15 12 51 51 H 1.08996 * 109.60569 * 77.05951 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4693 0.8912 8 6 3.4496 3.6848 -1.2480 9 7 5.3837 2.8608 0.0023 10 6 6.1116 3.8819 0.4963 11 8 5.5555 4.8643 0.9395 12 6 7.6165 3.8033 0.4969 13 1 8.0605 3.2774 -0.3483 14 6 8.3174 3.6817 1.8522 15 6 8.3848 4.9926 1.0697 16 6 7.5740 6.1813 1.5964 17 6 8.4819 7.0371 2.4864 18 7 9.6764 7.4322 1.7298 19 6 10.4631 8.4278 2.4701 20 6 11.0025 7.8046 3.7318 21 1 10.7167 6.7989 4.0022 22 6 11.8608 8.5185 4.5408 23 7 12.3358 7.9727 5.6391 24 14 12.3556 10.2579 4.0727 25 1 11.3937 11.2223 4.6641 26 1 13.7195 10.5402 4.5879 27 1 12.3471 10.3940 2.5940 28 6 10.4996 6.2697 1.3745 29 6 9.7185 5.3657 0.4146 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8658 4.6922 -1.2473 36 1 3.7858 3.1529 -2.1380 37 1 2.3611 3.7418 -1.2484 38 1 5.8285 2.0752 -0.3525 39 1 9.2224 3.0759 1.8984 40 1 7.6899 3.6590 2.7432 41 1 6.7279 5.8176 2.1794 42 1 7.2120 6.7797 0.7604 43 1 8.7804 6.4606 3.3619 44 1 7.9422 7.9289 2.8051 45 1 9.8275 9.2754 2.7265 46 1 11.2921 8.7696 1.8505 47 1 12.9428 8.4736 6.2061 48 1 11.4160 6.6076 0.8908 49 1 10.7493 5.7118 2.2769 50 1 10.2933 4.4613 0.2144 51 1 9.5317 5.8948 -0.5199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:50 Heat of formation + Delta-G solvation = -94.900316 kcal Electronic energy + Delta-G solvation = -29714.199299 eV Core-core repulsion = 25614.433332 eV Total energy + Delta-G solvation = -4099.765967 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.24689 -40.32621 -38.44444 -37.23266 -35.93151 -35.18665 -32.54743 -32.36947 -31.15415 -30.30913 -29.84096 -26.40265 -25.75938 -24.39778 -23.11209 -22.74242 -22.53099 -21.20684 -20.59431 -20.23587 -18.40723 -18.04979 -17.49874 -17.14671 -16.67543 -16.61882 -15.68907 -15.39289 -14.92882 -14.66989 -14.43613 -14.21985 -14.03526 -13.95748 -13.89182 -13.30881 -13.28247 -12.99716 -12.76038 -12.75324 -12.45671 -12.36946 -12.21622 -12.13092 -12.07493 -11.97045 -11.68898 -11.36250 -11.09714 -11.05667 -10.86414 -10.69718 -10.52724 -10.27145 -10.08996 -9.96444 -9.68700 -9.60541 -9.46033 -9.42877 -9.13336 -8.55583 -7.07999 -6.06419 -4.05615 1.65058 1.89891 2.41595 2.94681 3.31130 3.38328 3.42459 3.90487 4.03748 4.40616 4.43508 4.44926 4.52575 4.60346 4.71004 4.74707 4.82027 4.87483 5.10209 5.11837 5.15773 5.24635 5.25996 5.27689 5.34986 5.37581 5.45816 5.68216 5.73216 5.86679 5.89216 5.90816 6.02800 6.04493 6.13640 6.22374 6.28672 6.47255 6.58241 6.63800 6.80716 6.86869 7.01916 7.07367 7.14807 7.16537 7.25113 7.62962 8.07486 8.16467 8.25277 8.50463 8.97045 9.57098 11.06645 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.001932 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.991636 B =14488.402000 C =14502.674495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.352 6.352 4 C 0.462 3.538 5 O -0.503 6.503 6 C 0.154 3.846 7 H 0.127 0.873 8 C -0.158 4.158 9 N -0.721 5.721 10 C 0.553 3.447 11 O -0.522 6.522 12 C -0.198 4.198 13 H 0.121 0.879 14 C -0.144 4.144 15 C -0.066 4.066 16 C -0.073 4.073 17 C 0.063 3.937 18 N -0.536 5.536 19 C 0.152 3.848 20 C -0.547 4.547 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.901 5.901 24 Si 0.878 3.122 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.263 1.263 28 C 0.070 3.930 29 C -0.081 4.081 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.023 0.977 46 H 0.030 0.970 47 H 0.262 0.738 48 H 0.066 0.934 49 H 0.044 0.956 50 H 0.060 0.940 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.826 -15.959 -15.215 30.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.268 6.268 4 C 0.304 3.696 5 O -0.390 6.390 6 C 0.048 3.952 7 H 0.145 0.855 8 C -0.217 4.217 9 N -0.377 5.377 10 C 0.341 3.659 11 O -0.398 6.398 12 C -0.219 4.219 13 H 0.138 0.862 14 C -0.181 4.181 15 C -0.067 4.067 16 C -0.111 4.111 17 C -0.066 4.066 18 N -0.260 5.260 19 C 0.025 3.975 20 C -0.586 4.586 21 H 0.092 0.908 22 C -0.132 4.132 23 N -0.540 5.540 24 Si 0.705 3.295 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.188 1.188 28 C -0.059 4.059 29 C -0.118 4.118 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.246 0.754 39 H 0.122 0.878 40 H 0.116 0.884 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.090 -15.312 -15.174 30.158 hybrid contribution 0.882 -0.290 0.526 1.067 sum -20.208 -15.603 -14.648 29.435 Atomic orbital electron populations 1.21819 0.92266 1.03183 1.03763 1.23108 0.95617 0.79683 1.02837 1.86491 1.23715 1.32890 1.83680 1.23735 0.81149 0.92412 0.72284 1.90680 1.60378 1.42832 1.45118 1.20310 0.82015 0.89554 1.03335 0.85501 1.22135 1.02586 1.01613 0.95323 1.45880 1.04435 1.22244 1.65175 1.19863 0.88483 0.81722 0.75831 1.90710 1.72806 1.30904 1.45341 1.22271 0.90222 1.08706 1.00694 0.86152 1.23090 1.01493 1.01258 0.92302 1.21611 0.96427 0.89398 0.99286 1.21438 0.96320 0.93592 0.99732 1.21967 0.91559 0.98215 0.94812 1.62201 1.07505 1.12276 1.43993 1.20211 0.92972 0.91613 0.92702 1.21731 1.28038 1.02751 1.06094 0.90757 1.24982 0.95528 0.98031 0.94629 1.69934 1.32671 1.37651 1.13708 0.86806 0.77901 0.85209 0.79540 1.20256 1.21399 1.18751 1.21794 0.95034 0.91649 0.97428 1.21333 0.92669 0.98968 0.98878 0.91321 0.90043 0.91259 0.91023 0.90988 0.89926 0.91866 0.90155 0.75435 0.87798 0.88403 0.89986 0.91479 0.94332 0.91794 0.95886 0.95239 0.92778 0.91597 0.93787 0.92179 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 10.29 37.16 0.38 -0.21 16 2 C 0.06 0.37 6.19 37.16 0.23 0.60 16 3 O -0.35 -2.84 10.12 -39.24 -0.40 -3.23 16 4 C 0.46 4.27 7.32 36.01 0.26 4.54 16 5 O -0.50 -5.71 15.59 -18.75 -0.29 -6.00 16 6 C 0.15 1.37 3.09 -69.08 -0.21 1.16 16 7 H 0.13 1.19 7.58 -51.93 -0.39 0.80 16 8 C -0.16 -1.16 9.42 37.16 0.35 -0.81 16 9 N -0.72 -7.09 4.95 -54.93 -0.27 -7.36 16 10 C 0.55 6.84 7.56 -10.99 -0.08 6.75 16 11 O -0.52 -7.93 12.79 5.56 0.07 -7.85 16 12 C -0.20 -2.36 5.92 -91.88 -0.54 -2.91 16 13 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 14 C -0.14 -1.90 9.63 -26.80 -0.26 -2.16 16 15 C -0.07 -0.99 2.02 -154.52 -0.31 -1.30 16 16 C -0.07 -1.25 4.32 -26.48 -0.11 -1.36 16 17 C 0.06 1.27 5.09 -3.74 -0.02 1.25 16 18 N -0.54 -11.42 4.78 -235.89 -1.13 -12.54 16 19 C 0.15 3.72 4.19 -4.97 -0.02 3.70 16 20 C -0.55 -15.38 8.34 -34.44 -0.29 -15.66 16 21 H 0.07 2.27 6.17 -52.49 -0.32 1.95 16 22 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 23 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 24 Si 0.88 21.66 27.57 -169.99 -4.69 16.97 16 25 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 27 H -0.26 -6.24 6.40 56.52 0.36 -5.88 16 28 C 0.07 1.34 4.99 -3.74 -0.02 1.32 16 29 C -0.08 -1.22 5.87 -26.49 -0.16 -1.37 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.48 8.11 -51.93 -0.42 0.06 16 38 H 0.41 3.58 7.79 -40.82 -0.32 3.26 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.08 1.43 6.00 -51.93 -0.31 1.12 16 42 H 0.07 1.18 8.12 -51.93 -0.42 0.76 16 43 H 0.04 0.86 6.97 -51.93 -0.36 0.50 16 44 H 0.06 1.31 8.01 -51.93 -0.42 0.89 16 45 H 0.02 0.57 7.72 -51.93 -0.40 0.17 16 46 H 0.03 0.73 6.83 -51.93 -0.35 0.38 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.07 1.27 8.08 -51.93 -0.42 0.85 16 49 H 0.04 0.95 6.85 -51.93 -0.36 0.60 16 50 H 0.06 0.78 8.08 -51.92 -0.42 0.36 16 51 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 404.24 15.07 6.09 6.09 Total: -1.00 -32.96 404.24 -9.48 -42.44 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.74 Total: 2.89 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -0.90 Total: -4.51 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -0.63 Total: -46.79 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.62 Total: -17.09 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.69 Total: 16.97 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.96 -9.48 -42.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.465 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds