Wall clock time and date at job start Tue Mar 31 2020 20:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45199 * 109.47375 * 2 1 4 4 C 1.34221 * 117.00632 * 179.97438 * 3 2 1 5 5 O 1.20825 * 120.00123 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00457 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.47100 * 60.00391 * 6 4 3 8 8 C 1.52995 * 109.47370 * 300.00213 * 6 4 3 9 9 N 1.46503 * 109.47298 * 179.97438 * 6 4 3 10 10 C 1.34778 * 119.99988 * 205.00218 * 9 6 4 11 11 O 1.21282 * 119.99797 * 359.97438 * 10 9 6 12 12 C 1.50697 * 119.99954 * 180.02562 * 10 9 6 13 13 H 1.08999 * 115.56917 * 34.27541 * 12 10 9 14 14 C 1.53056 * 117.50092 * 248.55832 * 12 10 9 15 15 C 1.52732 * 117.50532 * 179.97438 * 12 10 9 16 16 C 1.53225 * 117.83341 * 359.74230 * 15 12 10 17 17 C 1.53256 * 108.62861 * 163.01900 * 16 15 12 18 18 N 1.46812 * 109.44716 * 55.56657 * 17 16 15 19 19 C 1.46908 * 110.99702 * 170.80628 * 18 17 16 20 20 C 1.50701 * 109.47361 * 65.07317 * 19 18 17 21 21 H 1.07996 * 119.99863 * 354.94343 * 20 19 18 22 22 C 1.37870 * 119.99987 * 174.94622 * 20 19 18 23 23 N 1.31517 * 120.00092 * 180.27726 * 22 20 19 24 24 Si 1.86806 * 120.00137 * 359.97438 * 22 20 19 25 25 H 1.48495 * 109.47108 * 89.99938 * 24 22 20 26 26 H 1.48497 * 109.47194 * 210.00321 * 24 22 20 27 27 H 1.48501 * 109.47062 * 330.00286 * 24 22 20 28 28 C 1.46813 * 111.58671 * 295.17991 * 18 17 16 29 29 C 1.53209 * 117.84972 * 215.21206 * 15 12 10 30 30 H 1.09002 * 109.47158 * 59.99943 * 1 2 3 31 31 H 1.08998 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46968 * 299.99649 * 1 2 3 33 33 H 1.09007 * 109.47305 * 240.00587 * 2 1 3 34 34 H 1.08997 * 109.47296 * 120.00543 * 2 1 3 35 35 H 1.08998 * 109.47411 * 179.97438 * 8 6 4 36 36 H 1.09000 * 109.47154 * 300.00145 * 8 6 4 37 37 H 1.09000 * 109.47484 * 59.99519 * 8 6 4 38 38 H 0.96997 * 120.00164 * 25.00021 * 9 6 4 39 39 H 1.09005 * 117.50773 * 145.05664 * 14 12 10 40 40 H 1.08998 * 117.51047 * 359.97438 * 14 12 10 41 41 H 1.08995 * 109.61488 * 43.27840 * 16 15 12 42 42 H 1.09002 * 109.75226 * 282.84462 * 16 15 12 43 43 H 1.08998 * 109.47247 * 295.57250 * 17 16 15 44 44 H 1.08998 * 109.47168 * 175.55651 * 17 16 15 45 45 H 1.09005 * 109.46815 * 305.06995 * 19 18 17 46 46 H 1.08998 * 109.46820 * 185.07609 * 19 18 17 47 47 H 0.96998 * 119.99741 * 179.72404 * 23 22 20 48 48 H 1.08990 * 109.47616 * 184.81337 * 28 18 17 49 49 H 1.09000 * 109.47247 * 304.83224 * 28 18 17 50 50 H 1.09009 * 109.60370 * 316.72454 * 29 15 12 51 51 H 1.08996 * 109.60569 * 77.05951 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5845 3.4693 0.8912 8 6 3.4496 3.6848 -1.2480 9 7 5.3837 2.8608 0.0023 10 6 6.1116 3.8819 0.4963 11 8 5.5555 4.8643 0.9395 12 6 7.6165 3.8033 0.4969 13 1 8.0605 3.2774 -0.3483 14 6 8.3174 3.6817 1.8522 15 6 8.3848 4.9926 1.0697 16 6 7.5740 6.1813 1.5964 17 6 8.4819 7.0371 2.4864 18 7 9.6764 7.4322 1.7298 19 6 10.4631 8.4278 2.4701 20 6 11.0025 7.8046 3.7318 21 1 10.7167 6.7989 4.0022 22 6 11.8608 8.5185 4.5408 23 7 12.3358 7.9727 5.6391 24 14 12.3556 10.2579 4.0727 25 1 11.3937 11.2223 4.6641 26 1 13.7195 10.5402 4.5879 27 1 12.3471 10.3940 2.5940 28 6 10.4996 6.2697 1.3745 29 6 9.7185 5.3657 0.4146 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8658 4.6922 -1.2473 36 1 3.7858 3.1529 -2.1380 37 1 2.3611 3.7418 -1.2484 38 1 5.8285 2.0752 -0.3525 39 1 9.2224 3.0759 1.8984 40 1 7.6899 3.6590 2.7432 41 1 6.7279 5.8176 2.1794 42 1 7.2120 6.7797 0.7604 43 1 8.7804 6.4606 3.3619 44 1 7.9422 7.9289 2.8051 45 1 9.8275 9.2754 2.7265 46 1 11.2921 8.7696 1.8505 47 1 12.9428 8.4736 6.2061 48 1 11.4160 6.6076 0.8908 49 1 10.7493 5.7118 2.2769 50 1 10.2933 4.4613 0.2144 51 1 9.5317 5.8948 -0.5199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030761.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:49 Heat of formation + Delta-G solvation = -116.777773 kcal Electronic energy + Delta-G solvation = -29715.147977 eV Core-core repulsion = 25614.433332 eV Total energy + Delta-G solvation = -4100.714644 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.03160 -41.33717 -39.68961 -38.01540 -37.28423 -36.13095 -34.61811 -32.96715 -32.05238 -31.77428 -31.28648 -28.22111 -26.49756 -25.22650 -24.48712 -24.08711 -23.64568 -22.29356 -21.76154 -21.33163 -19.83767 -19.00638 -18.64611 -18.24081 -17.81630 -17.53243 -16.84810 -16.52915 -16.16219 -15.87607 -15.86507 -15.48640 -15.36760 -15.24109 -14.64283 -14.52072 -14.29369 -14.09317 -13.83163 -13.71321 -13.66886 -13.58044 -13.36882 -13.08127 -12.99315 -12.95470 -12.84672 -12.73599 -12.50591 -12.32551 -12.16523 -11.94793 -11.81893 -11.70069 -11.59755 -11.58466 -11.41326 -10.87770 -10.78735 -10.75368 -10.42828 -10.33365 -8.92273 -8.30736 -6.35600 0.92587 1.20069 1.36284 1.37124 1.43835 1.49394 2.14549 2.34601 2.83057 3.04067 3.38046 3.39836 3.60997 3.71751 3.85702 3.89123 3.96834 4.01489 4.04081 4.04782 4.12958 4.32638 4.45222 4.48006 4.62553 4.66848 4.71811 4.73980 4.80077 4.84376 4.85824 4.91891 4.95572 4.98963 5.05890 5.06574 5.09525 5.12292 5.16428 5.20193 5.28569 5.32339 5.35980 5.40806 5.49994 5.59153 6.14130 6.37723 6.39592 6.49445 6.51646 6.71417 7.14844 7.31510 8.85586 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.029343 B = 0.001932 C = 0.001930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.991636 B =14488.402000 C =14502.674495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.053 3.947 3 O -0.352 6.352 4 C 0.469 3.531 5 O -0.526 6.526 6 C 0.152 3.848 7 H 0.121 0.879 8 C -0.151 4.151 9 N -0.709 5.709 10 C 0.550 3.450 11 O -0.555 6.555 12 C -0.167 4.167 13 H 0.156 0.844 14 C -0.147 4.147 15 C -0.094 4.094 16 C -0.056 4.056 17 C 0.067 3.933 18 N -0.531 5.531 19 C 0.157 3.843 20 C -0.547 4.547 21 H 0.033 0.967 22 C 0.009 3.991 23 N -0.949 5.949 24 Si 0.949 3.051 25 H -0.269 1.269 26 H -0.283 1.283 27 H -0.244 1.244 28 C 0.068 3.932 29 C -0.067 4.067 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.417 0.583 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.005 0.995 44 H 0.055 0.945 45 H 0.024 0.976 46 H 0.035 0.965 47 H 0.265 0.735 48 H 0.065 0.935 49 H 0.011 0.989 50 H 0.090 0.910 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.734 -16.443 -17.950 32.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.268 6.268 4 C 0.312 3.688 5 O -0.415 6.415 6 C 0.046 3.954 7 H 0.138 0.862 8 C -0.209 4.209 9 N -0.364 5.364 10 C 0.339 3.661 11 O -0.433 6.433 12 C -0.187 4.187 13 H 0.174 0.826 14 C -0.184 4.184 15 C -0.095 4.095 16 C -0.094 4.094 17 C -0.062 4.062 18 N -0.254 5.254 19 C 0.030 3.970 20 C -0.586 4.586 21 H 0.051 0.949 22 C -0.188 4.188 23 N -0.589 5.589 24 Si 0.773 3.227 25 H -0.195 1.195 26 H -0.209 1.209 27 H -0.167 1.167 28 C -0.060 4.060 29 C -0.104 4.104 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.113 0.887 38 H 0.255 0.745 39 H 0.138 0.862 40 H 0.103 0.897 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.024 0.976 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.084 0.916 49 H 0.029 0.971 50 H 0.108 0.892 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -22.033 -15.834 -17.942 32.528 hybrid contribution 1.059 -0.267 1.434 1.803 sum -20.974 -16.101 -16.508 31.171 Atomic orbital electron populations 1.21840 0.90411 1.04435 1.03838 1.23367 0.97074 0.78668 1.02876 1.86493 1.22910 1.34207 1.83211 1.23697 0.81436 0.92069 0.71610 1.90671 1.60934 1.43498 1.46396 1.20400 0.81358 0.89653 1.03980 0.86169 1.22082 1.03477 1.00626 0.94706 1.45743 1.04941 1.21739 1.64027 1.19947 0.88811 0.81751 0.75613 1.90704 1.73355 1.32333 1.46862 1.22312 0.89832 1.05671 1.00912 0.82629 1.23125 1.02242 1.00290 0.92746 1.21491 0.96921 0.89480 1.01588 1.21201 0.95486 0.93992 0.98689 1.21950 0.91730 0.97972 0.94505 1.62262 1.07491 1.12839 1.42808 1.20098 0.93317 0.92333 0.91301 1.21913 1.27837 1.01220 1.07594 0.94863 1.25938 0.95557 1.02925 0.94421 1.70086 1.33831 1.39785 1.15199 0.85675 0.77612 0.79159 0.80272 1.19454 1.20897 1.16730 1.21865 0.95745 0.91257 0.97144 1.21232 0.92311 0.99209 0.97679 0.90940 0.88205 0.91449 0.90641 0.91362 0.91104 0.90896 0.88688 0.74499 0.86245 0.89728 0.90527 0.91771 0.97635 0.92692 0.95823 0.94731 0.92574 0.91621 0.97101 0.89158 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.29 71.98 0.74 -0.13 16 2 C 0.05 0.58 6.19 71.98 0.45 1.03 16 3 O -0.35 -5.20 10.12 -51.33 -0.52 -5.72 16 4 C 0.47 8.05 7.32 71.24 0.52 8.57 16 5 O -0.53 -11.26 15.59 21.97 0.34 -10.92 16 6 C 0.15 2.50 3.09 44.24 0.14 2.64 16 7 H 0.12 2.19 7.58 -2.39 -0.02 2.17 16 8 C -0.15 -1.94 9.42 71.98 0.68 -1.26 16 9 N -0.71 -12.63 4.95 -446.10 -2.21 -14.84 16 10 C 0.55 12.73 7.56 87.66 0.66 13.39 16 11 O -0.55 -16.51 12.79 -3.04 -0.04 -16.55 16 12 C -0.17 -3.55 5.92 -11.61 -0.07 -3.62 16 13 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 14 C -0.15 -3.70 9.63 30.55 0.29 -3.41 16 15 C -0.09 -2.68 2.02 -52.19 -0.11 -2.78 16 16 C -0.06 -1.93 4.32 30.76 0.13 -1.79 16 17 C 0.07 2.81 5.09 86.41 0.44 3.25 16 18 N -0.53 -22.84 4.78 -900.22 -4.30 -27.15 16 19 C 0.16 7.75 4.19 85.56 0.36 8.11 16 20 C -0.55 -31.80 8.34 25.60 0.21 -31.59 16 21 H 0.03 2.16 6.17 -2.91 -0.02 2.14 16 22 C 0.01 0.55 5.47 84.65 0.46 1.01 16 23 N -0.95 -60.04 13.96 21.44 0.30 -59.74 16 24 Si 0.95 44.75 27.57 68.60 1.89 46.64 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 H -0.24 -10.66 6.40 99.48 0.64 -10.03 16 28 C 0.07 2.64 4.99 86.40 0.43 3.08 16 29 C -0.07 -1.88 5.87 30.75 0.18 -1.70 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 35 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 0.94 8.11 -2.39 -0.02 0.92 16 38 H 0.42 6.28 7.79 -92.71 -0.72 5.56 16 39 H 0.12 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 41 H 0.08 2.73 6.00 -2.39 -0.01 2.72 16 42 H 0.06 2.23 8.12 -2.39 -0.02 2.22 16 43 H 0.01 0.26 6.97 -2.39 -0.02 0.24 16 44 H 0.05 2.34 8.01 -2.39 -0.02 2.32 16 45 H 0.02 1.16 7.72 -2.38 -0.02 1.14 16 46 H 0.03 1.68 6.83 -2.39 -0.02 1.66 16 47 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 48 H 0.07 2.51 8.08 -2.39 -0.02 2.49 16 49 H 0.01 0.48 6.85 -2.39 -0.02 0.47 16 50 H 0.09 2.02 8.08 -2.38 -0.02 2.01 16 51 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -73.89 404.24 1.12 -72.78 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: 0.13 Total: 20.71 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 5.52 Total: -5.20 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -6.21 Total: -101.73 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -0.22 Total: -33.19 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.89 Total: 46.64 kcal Total: -73.89 1.12 -72.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030761.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.002 kcal (2) G-P(sol) polarization free energy of solvation -73.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds