Wall clock time and date at job start Tue Mar 31 2020 20:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46564 * 299.72723 * 6 4 3 8 8 C 1.52997 * 109.46859 * 59.72071 * 6 4 3 9 9 N 1.46493 * 109.47128 * 179.72247 * 6 4 3 10 10 C 1.46930 * 124.35002 * 119.72663 * 9 6 4 11 11 C 1.53976 * 105.27529 * 163.47428 * 10 9 6 12 12 C 1.53994 * 102.37748 * 25.03989 * 11 10 9 13 13 C 1.34494 * 124.35808 * 300.02404 * 9 6 4 14 14 O 1.21282 * 124.93998 * 0.38233 * 13 9 6 15 15 C 1.52230 * 110.50183 * 142.73879 * 11 10 9 16 16 C 1.53250 * 109.41810 * 66.84951 * 15 11 10 17 17 C 1.53132 * 109.06746 * 56.40982 * 16 15 11 18 18 C 1.53043 * 109.34685 * 301.67566 * 17 16 15 19 19 N 1.45973 * 110.99533 * 266.93474 * 11 10 9 20 20 C 1.46895 * 110.99801 * 60.14606 * 19 11 10 21 21 C 1.50704 * 109.47085 * 169.99931 * 20 19 11 22 22 H 1.08007 * 119.99773 * 359.97438 * 21 20 19 23 23 C 1.37872 * 120.00427 * 179.97438 * 21 20 19 24 24 N 1.31511 * 119.99709 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00232 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47261 * 90.00014 * 25 23 21 27 27 H 1.48506 * 109.47000 * 210.00359 * 25 23 21 28 28 H 1.48508 * 109.47021 * 329.99698 * 25 23 21 29 29 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 31 31 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 32 32 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 33 33 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 34 34 H 1.08995 * 109.47505 * 300.00432 * 8 6 4 35 35 H 1.09001 * 109.47000 * 60.00919 * 8 6 4 36 36 H 1.09002 * 109.46917 * 180.02562 * 8 6 4 37 37 H 1.08999 * 110.26603 * 282.56255 * 10 9 6 38 38 H 1.08998 * 110.26958 * 44.61918 * 10 9 6 39 39 H 1.09005 * 110.50764 * 217.02070 * 12 11 10 40 40 H 1.09004 * 110.50684 * 94.31344 * 12 11 10 41 41 H 1.08999 * 109.48295 * 186.83508 * 15 11 10 42 42 H 1.09001 * 109.47682 * 306.87104 * 15 11 10 43 43 H 1.08998 * 109.53528 * 176.28410 * 16 15 11 44 44 H 1.08997 * 109.53931 * 296.52570 * 16 15 11 45 45 H 1.08994 * 109.49222 * 61.63953 * 17 16 15 46 46 H 1.09001 * 109.48750 * 181.68735 * 17 16 15 47 47 H 1.09005 * 109.46865 * 179.83906 * 18 17 16 48 48 H 1.09004 * 109.47368 * 299.83849 * 18 17 16 49 49 H 1.09000 * 109.47141 * 289.99543 * 20 19 11 50 50 H 1.08995 * 109.47598 * 49.99997 * 20 19 11 51 51 H 0.97005 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5882 3.4684 -0.8920 8 6 3.4441 3.6859 1.2464 9 7 5.3836 2.8607 0.0060 10 6 6.2472 3.4166 -1.0447 11 6 7.6544 3.4782 -0.4228 12 6 7.5857 2.3838 0.6584 13 6 6.1087 2.2674 0.9709 14 8 5.6466 1.7184 1.9487 15 6 8.7123 3.1350 -1.4622 16 6 8.7500 4.2316 -2.5321 17 6 9.0052 5.5816 -1.8559 18 6 7.9025 5.8510 -0.8294 19 7 7.9027 4.7838 0.1811 20 6 6.9293 5.0656 1.2446 21 6 7.3573 6.2944 2.0047 22 1 8.2623 6.8139 1.7259 23 6 6.5938 6.7556 3.0560 24 7 5.4922 6.1228 3.3958 25 14 7.1241 8.2792 3.9977 26 1 6.5317 9.4842 3.3635 27 1 6.6570 8.1795 5.4039 28 1 8.6052 8.3850 3.9745 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.3557 3.7429 1.2420 35 1 3.7766 3.1549 2.1384 36 1 3.8604 4.6933 1.2466 37 1 6.2461 2.7650 -1.9185 38 1 5.9125 4.4172 -1.3186 39 1 8.1410 2.6881 1.5457 40 1 7.9697 1.4400 0.2713 41 1 9.6870 3.0645 -0.9794 42 1 8.4675 2.1806 -1.9285 43 1 9.5510 4.0218 -3.2410 44 1 7.7954 4.2614 -3.0573 45 1 9.9722 5.5598 -1.3536 46 1 9.0036 6.3709 -2.6077 47 1 8.0837 6.8104 -0.3448 48 1 6.9357 5.8749 -1.3325 49 1 5.9474 5.2353 0.8027 50 1 6.8792 4.2161 1.9257 51 1 4.9552 6.4470 4.1357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:14 Heat of formation + Delta-G solvation = -108.615907 kcal Electronic energy + Delta-G solvation = -32554.892227 eV Core-core repulsion = 28454.531508 eV Total energy + Delta-G solvation = -4100.360719 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.16053 -40.10390 -37.96110 -36.44213 -35.26388 -33.71561 -33.44973 -31.84910 -31.71148 -30.04681 -27.71674 -27.15108 -25.48943 -24.81476 -23.78095 -22.98969 -21.68035 -21.37679 -20.82590 -19.05720 -18.06147 -17.53467 -16.96222 -16.55133 -16.35194 -15.79227 -15.42040 -15.08561 -14.60971 -14.26796 -14.10483 -14.06235 -14.00149 -13.77548 -13.38913 -13.15216 -12.85075 -12.70362 -12.52732 -12.38960 -12.17008 -11.95623 -11.90927 -11.80626 -11.62825 -11.57616 -11.40607 -11.29701 -11.14100 -10.88428 -10.78964 -10.70707 -10.51380 -10.34633 -10.22778 -10.11961 -10.07133 -9.68644 -9.18376 -9.02161 -8.45046 -8.37840 -7.30084 -6.01354 -4.03151 2.37594 2.53840 3.22392 3.31020 3.38669 3.41881 3.50507 4.39247 4.58008 4.65927 4.78931 4.82646 4.89074 4.92519 5.06474 5.10322 5.16881 5.22186 5.29648 5.33731 5.37971 5.47165 5.54125 5.59786 5.65157 5.65808 5.75338 5.82613 5.89814 5.97801 6.00818 6.04543 6.18129 6.20073 6.31947 6.35181 6.38698 6.40020 6.50210 6.67457 6.68693 6.78457 6.93582 7.27961 7.34616 7.53730 7.78116 7.92207 8.06135 8.14741 8.51452 8.76156 9.03046 9.60611 11.08148 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.004667 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.747731 B = 5998.724137 C = 7887.190070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.358 6.358 4 C 0.452 3.548 5 O -0.492 6.492 6 C 0.175 3.825 7 H 0.117 0.883 8 C -0.158 4.158 9 N -0.605 5.605 10 C 0.078 3.922 11 C 0.109 3.891 12 C -0.143 4.143 13 C 0.541 3.459 14 O -0.521 6.521 15 C -0.098 4.098 16 C -0.119 4.119 17 C -0.119 4.119 18 C 0.063 3.937 19 N -0.518 5.518 20 C 0.190 3.810 21 C -0.513 4.513 22 H 0.062 0.938 23 C 0.060 3.940 24 N -0.888 5.888 25 Si 0.893 3.107 26 H -0.283 1.283 27 H -0.288 1.288 28 H -0.274 1.274 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.023 0.977 49 H -0.002 1.002 50 H 0.035 0.965 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.561 -7.120 -13.336 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.275 6.275 4 C 0.293 3.707 5 O -0.377 6.377 6 C 0.069 3.931 7 H 0.135 0.865 8 C -0.216 4.216 9 N -0.341 5.341 10 C -0.046 4.046 11 C 0.017 3.983 12 C -0.183 4.183 13 C 0.330 3.670 14 O -0.396 6.396 15 C -0.136 4.136 16 C -0.157 4.157 17 C -0.157 4.157 18 C -0.065 4.065 19 N -0.242 5.242 20 C 0.066 3.934 21 C -0.552 4.552 22 H 0.080 0.920 23 C -0.142 4.142 24 N -0.527 5.527 25 Si 0.722 3.278 26 H -0.209 1.209 27 H -0.214 1.214 28 H -0.199 1.199 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.083 0.917 38 H 0.098 0.902 39 H 0.132 0.868 40 H 0.116 0.884 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.041 0.959 49 H 0.016 0.984 50 H 0.053 0.947 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.359 -7.745 -12.434 15.029 hybrid contribution -0.705 0.685 0.177 0.999 sum -4.064 -7.060 -12.257 14.717 Atomic orbital electron populations 1.21793 0.92720 1.02739 1.03532 1.22972 0.95190 0.80628 1.02435 1.86492 1.24562 1.32045 1.84395 1.24303 0.80583 0.93341 0.72506 1.90649 1.60281 1.42775 1.43997 1.20323 0.80544 0.89110 1.03112 0.86544 1.22123 1.00969 1.02512 0.95949 1.47997 1.03404 1.58326 1.24360 1.22917 0.92361 0.98986 0.90359 1.21331 0.91367 0.92421 0.93180 1.22419 0.94489 0.99443 1.01944 1.20655 0.89139 0.75815 0.81350 1.90665 1.76981 1.43637 1.28296 1.21432 0.99159 0.97793 0.95226 1.21602 1.01112 0.95605 0.97331 1.21647 1.00296 0.96086 0.97651 1.22004 0.95733 0.96613 0.92151 1.61964 1.52700 0.98525 1.11007 1.19873 0.88295 0.97287 0.87944 1.21118 1.08748 1.10468 1.14821 0.92007 1.24936 0.95059 0.97149 0.97083 1.69949 1.14454 1.39603 1.28662 0.86576 0.78916 0.83150 0.79204 1.20888 1.21351 1.19884 0.90445 0.91352 0.91573 0.91592 0.91282 0.91306 0.90333 0.88700 0.91725 0.90217 0.86768 0.88375 0.90504 0.91810 0.92222 0.92520 0.91291 0.92369 0.89516 0.95926 0.98431 0.94720 0.92993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.16 0.38 -0.91 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -5.33 10.11 -39.24 -0.40 -5.73 16 4 C 0.45 7.84 6.96 36.01 0.25 8.09 16 5 O -0.49 -9.84 14.62 -24.24 -0.35 -10.20 16 6 C 0.17 2.93 3.39 -69.08 -0.23 2.70 16 7 H 0.12 1.56 8.07 -51.93 -0.42 1.14 16 8 C -0.16 -2.92 9.13 37.16 0.34 -2.58 16 9 N -0.61 -11.03 1.93 -166.27 -0.32 -11.35 16 10 C 0.08 1.22 4.78 -3.30 -0.02 1.20 16 11 C 0.11 1.77 0.70 -131.47 -0.09 1.67 16 12 C -0.14 -2.57 5.44 -27.01 -0.15 -2.71 16 13 C 0.54 11.39 4.77 -10.76 -0.05 11.34 16 14 O -0.52 -12.91 15.39 -9.64 -0.15 -13.06 16 15 C -0.10 -1.24 4.65 -26.99 -0.13 -1.37 16 16 C -0.12 -1.36 5.82 -26.53 -0.15 -1.52 16 17 C -0.12 -1.57 6.07 -26.64 -0.16 -1.73 16 18 C 0.06 1.07 5.07 -3.76 -0.02 1.05 16 19 N -0.52 -10.03 4.45 -220.26 -0.98 -11.01 16 20 C 0.19 4.58 3.32 -4.98 -0.02 4.56 16 21 C -0.51 -13.70 8.45 -34.44 -0.29 -13.99 16 22 H 0.06 1.64 7.09 -52.48 -0.37 1.27 16 23 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 24 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 25 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.07 0.89 8.13 -51.93 -0.42 0.47 16 34 H 0.07 1.08 8.11 -51.93 -0.42 0.66 16 35 H 0.08 1.74 6.80 -51.93 -0.35 1.38 16 36 H 0.09 1.98 7.39 -51.93 -0.38 1.60 16 37 H 0.06 0.86 7.78 -51.93 -0.40 0.46 16 38 H 0.08 1.24 5.80 -51.93 -0.30 0.94 16 39 H 0.11 2.26 7.40 -51.93 -0.38 1.88 16 40 H 0.10 1.50 7.86 -51.93 -0.41 1.09 16 41 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.06 0.71 8.04 -51.93 -0.42 0.29 16 43 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.62 7.60 -51.93 -0.39 0.23 16 45 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.09 1.66 6.71 -51.93 -0.35 1.31 16 48 H 0.02 0.38 6.23 -51.93 -0.32 0.06 16 49 H 0.00 -0.05 6.30 -51.93 -0.33 -0.38 16 50 H 0.03 0.94 5.18 -51.93 -0.27 0.67 16 51 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 389.05 15.07 5.86 5.86 Total: -1.00 -32.92 389.05 -9.29 -42.21 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -8.47 Total: 3.34 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -0.20 Total: 8.31 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.56 Total: -46.94 kcal Atomic # 8 Polarization: -28.08 SS G_CDS: -0.90 Total: -28.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.92 -9.29 -42.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.408 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds