Wall clock time and date at job start Tue Mar 31 2020 20:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47142 * 2 1 4 4 C 1.34222 * 116.99867 * 180.02562 * 3 2 1 5 5 O 1.20830 * 120.00323 * 359.72425 * 4 3 2 6 6 C 1.50706 * 120.00024 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.46564 * 299.72723 * 6 4 3 8 8 C 1.52997 * 109.46859 * 59.72071 * 6 4 3 9 9 N 1.46493 * 109.47128 * 179.72247 * 6 4 3 10 10 C 1.46930 * 124.35002 * 119.72663 * 9 6 4 11 11 C 1.53976 * 105.27529 * 163.47428 * 10 9 6 12 12 C 1.53994 * 102.37748 * 25.03989 * 11 10 9 13 13 C 1.34494 * 124.35808 * 300.02404 * 9 6 4 14 14 O 1.21282 * 124.93998 * 0.38233 * 13 9 6 15 15 C 1.52230 * 110.50183 * 142.73879 * 11 10 9 16 16 C 1.53250 * 109.41810 * 66.84951 * 15 11 10 17 17 C 1.53132 * 109.06746 * 56.40982 * 16 15 11 18 18 C 1.53043 * 109.34685 * 301.67566 * 17 16 15 19 19 N 1.45973 * 110.99533 * 266.93474 * 11 10 9 20 20 C 1.46895 * 110.99801 * 60.14606 * 19 11 10 21 21 C 1.50704 * 109.47085 * 169.99931 * 20 19 11 22 22 H 1.08007 * 119.99773 * 359.97438 * 21 20 19 23 23 C 1.37872 * 120.00427 * 179.97438 * 21 20 19 24 24 N 1.31511 * 119.99709 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00232 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47261 * 90.00014 * 25 23 21 27 27 H 1.48506 * 109.47000 * 210.00359 * 25 23 21 28 28 H 1.48508 * 109.47021 * 329.99698 * 25 23 21 29 29 H 1.09004 * 109.46957 * 180.02562 * 1 2 3 30 30 H 1.09009 * 109.46963 * 299.99598 * 1 2 3 31 31 H 1.08997 * 109.47571 * 60.00140 * 1 2 3 32 32 H 1.09009 * 109.46963 * 240.00402 * 2 1 3 33 33 H 1.09001 * 109.47306 * 120.00307 * 2 1 3 34 34 H 1.08995 * 109.47505 * 300.00432 * 8 6 4 35 35 H 1.09001 * 109.47000 * 60.00919 * 8 6 4 36 36 H 1.09002 * 109.46917 * 180.02562 * 8 6 4 37 37 H 1.08999 * 110.26603 * 282.56255 * 10 9 6 38 38 H 1.08998 * 110.26958 * 44.61918 * 10 9 6 39 39 H 1.09005 * 110.50764 * 217.02070 * 12 11 10 40 40 H 1.09004 * 110.50684 * 94.31344 * 12 11 10 41 41 H 1.08999 * 109.48295 * 186.83508 * 15 11 10 42 42 H 1.09001 * 109.47682 * 306.87104 * 15 11 10 43 43 H 1.08998 * 109.53528 * 176.28410 * 16 15 11 44 44 H 1.08997 * 109.53931 * 296.52570 * 16 15 11 45 45 H 1.08994 * 109.49222 * 61.63953 * 17 16 15 46 46 H 1.09001 * 109.48750 * 181.68735 * 17 16 15 47 47 H 1.09005 * 109.46865 * 179.83906 * 18 17 16 48 48 H 1.09004 * 109.47368 * 299.83849 * 18 17 16 49 49 H 1.09000 * 109.47141 * 289.99543 * 20 19 11 50 50 H 1.08995 * 109.47598 * 49.99997 * 20 19 11 51 51 H 0.97005 * 120.00019 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 0.0040 6 6 3.9207 2.9374 0.0000 7 1 3.5882 3.4684 -0.8920 8 6 3.4441 3.6859 1.2464 9 7 5.3836 2.8607 0.0060 10 6 6.2472 3.4166 -1.0447 11 6 7.6544 3.4782 -0.4228 12 6 7.5857 2.3838 0.6584 13 6 6.1087 2.2674 0.9709 14 8 5.6466 1.7184 1.9487 15 6 8.7123 3.1350 -1.4622 16 6 8.7500 4.2316 -2.5321 17 6 9.0052 5.5816 -1.8559 18 6 7.9025 5.8510 -0.8294 19 7 7.9027 4.7838 0.1811 20 6 6.9293 5.0656 1.2446 21 6 7.3573 6.2944 2.0047 22 1 8.2623 6.8139 1.7259 23 6 6.5938 6.7556 3.0560 24 7 5.4922 6.1228 3.3958 25 14 7.1241 8.2792 3.9977 26 1 6.5317 9.4842 3.3635 27 1 6.6570 8.1795 5.4039 28 1 8.6052 8.3850 3.9745 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.3557 3.7429 1.2420 35 1 3.7766 3.1549 2.1384 36 1 3.8604 4.6933 1.2466 37 1 6.2461 2.7650 -1.9185 38 1 5.9125 4.4172 -1.3186 39 1 8.1410 2.6881 1.5457 40 1 7.9697 1.4400 0.2713 41 1 9.6870 3.0645 -0.9794 42 1 8.4675 2.1806 -1.9285 43 1 9.5510 4.0218 -3.2410 44 1 7.7954 4.2614 -3.0573 45 1 9.9722 5.5598 -1.3536 46 1 9.0036 6.3709 -2.6077 47 1 8.0837 6.8104 -0.3448 48 1 6.9357 5.8749 -1.3325 49 1 5.9474 5.2353 0.8027 50 1 6.8792 4.2161 1.9257 51 1 4.9552 6.4470 4.1357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030770.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:13 Heat of formation + Delta-G solvation = -129.271826 kcal Electronic energy + Delta-G solvation = -32555.787935 eV Core-core repulsion = 28454.531508 eV Total energy + Delta-G solvation = -4101.256427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.58289 -41.42545 -39.41488 -37.77845 -36.77437 -35.45154 -34.79901 -33.56592 -32.67447 -31.36878 -29.10097 -28.93046 -26.96244 -26.21054 -25.20502 -24.07854 -23.22899 -22.67191 -22.13235 -20.48275 -19.38030 -18.95350 -18.53393 -18.10506 -17.77450 -17.16678 -16.89917 -16.70046 -16.08980 -15.88527 -15.48110 -15.44467 -15.24582 -15.02901 -14.68149 -14.48120 -14.18279 -13.98082 -13.84692 -13.66374 -13.61287 -13.34622 -13.29258 -13.17596 -13.07237 -12.86836 -12.79979 -12.70805 -12.57326 -12.54119 -12.49437 -12.07994 -11.97728 -11.60194 -11.58005 -11.51031 -11.34001 -11.25585 -10.92407 -10.59903 -10.50918 -9.87068 -8.87745 -8.12803 -6.21973 1.01291 1.27685 1.39507 1.41875 1.51754 1.67519 2.13402 2.41872 3.15000 3.20141 3.34393 3.54908 3.58280 3.80718 3.87189 3.88772 3.94736 4.03413 4.04350 4.18988 4.27739 4.37551 4.42616 4.45294 4.53051 4.57458 4.63658 4.66944 4.75962 4.79495 4.88671 4.92046 5.00904 5.07392 5.11339 5.13784 5.20873 5.24592 5.33085 5.35041 5.36939 5.40744 5.47702 5.52691 5.65282 5.73229 6.04657 6.14926 6.44257 6.59851 6.75448 6.94407 7.18933 7.46461 8.95279 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010210 B = 0.004667 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.747731 B = 5998.724137 C = 7887.190070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.457 3.543 5 O -0.522 6.522 6 C 0.168 3.832 7 H 0.159 0.841 8 C -0.141 4.141 9 N -0.605 5.605 10 C 0.078 3.922 11 C 0.110 3.890 12 C -0.141 4.141 13 C 0.526 3.474 14 O -0.574 6.574 15 C -0.093 4.093 16 C -0.113 4.113 17 C -0.111 4.111 18 C 0.062 3.938 19 N -0.529 5.529 20 C 0.216 3.784 21 C -0.526 4.526 22 H 0.059 0.941 23 C 0.009 3.991 24 N -0.919 5.919 25 Si 0.957 3.043 26 H -0.271 1.271 27 H -0.290 1.290 28 H -0.269 1.269 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.033 0.967 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.081 0.919 47 H 0.057 0.943 48 H 0.027 0.973 49 H -0.021 1.021 50 H -0.004 1.004 51 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.329 -6.987 -16.743 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.299 3.701 5 O -0.410 6.410 6 C 0.063 3.937 7 H 0.176 0.824 8 C -0.199 4.199 9 N -0.339 5.339 10 C -0.045 4.045 11 C 0.018 3.982 12 C -0.181 4.181 13 C 0.317 3.683 14 O -0.454 6.454 15 C -0.131 4.131 16 C -0.150 4.150 17 C -0.149 4.149 18 C -0.065 4.065 19 N -0.253 5.253 20 C 0.090 3.910 21 C -0.565 4.565 22 H 0.077 0.923 23 C -0.190 4.190 24 N -0.559 5.559 25 Si 0.783 3.217 26 H -0.197 1.197 27 H -0.216 1.216 28 H -0.193 1.193 29 H 0.121 0.879 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.146 0.854 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.107 0.893 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.099 0.901 47 H 0.076 0.924 48 H 0.045 0.955 49 H -0.003 1.003 50 H 0.014 0.986 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.124 -7.583 -15.902 17.892 hybrid contribution -0.826 0.625 1.257 1.629 sum -3.950 -6.958 -14.644 16.688 Atomic orbital electron populations 1.21819 0.89707 1.04526 1.03896 1.23318 0.97486 0.79090 1.02177 1.86485 1.23022 1.33930 1.83724 1.24244 0.81219 0.92927 0.71730 1.90632 1.61149 1.43631 1.45573 1.20524 0.80050 0.89449 1.03674 0.82355 1.21884 1.02482 1.00310 0.95217 1.48128 1.04249 1.57190 1.24328 1.23124 0.91046 0.99840 0.90499 1.21513 0.93484 0.89829 0.93334 1.22450 0.92307 1.01661 1.01726 1.21241 0.90681 0.75335 0.81075 1.90616 1.78130 1.46179 1.30432 1.21472 0.97488 0.99709 0.94423 1.21606 1.02989 0.93367 0.97050 1.21598 0.97974 0.98388 0.96900 1.22035 0.97710 0.94539 0.92239 1.61824 1.51101 1.00819 1.11539 1.19336 0.88447 0.94631 0.88588 1.21489 1.08474 1.11345 1.15161 0.92267 1.25747 0.95111 1.00039 0.98120 1.70101 1.15550 1.41116 1.29115 0.85574 0.78675 0.79923 0.77553 1.19698 1.21613 1.19312 0.87930 0.91671 0.90471 0.90749 0.92756 0.88521 0.94772 0.91479 0.87937 0.90006 0.89632 0.85418 0.90609 0.89006 0.89262 0.91216 0.92006 0.90079 0.92439 0.95514 1.00323 0.98567 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 10.29 71.98 0.74 -1.43 16 2 C 0.05 1.23 6.19 71.98 0.45 1.67 16 3 O -0.36 -10.33 10.11 -51.34 -0.52 -10.85 16 4 C 0.46 15.81 6.96 71.24 0.50 16.31 16 5 O -0.52 -21.12 14.62 27.20 0.40 -20.72 16 6 C 0.17 5.63 3.39 44.25 0.15 5.78 16 7 H 0.16 3.91 8.07 -2.39 -0.02 3.89 16 8 C -0.14 -5.47 9.13 71.98 0.66 -4.82 16 9 N -0.61 -22.16 1.93 -798.50 -1.54 -23.70 16 10 C 0.08 2.27 4.78 86.63 0.41 2.68 16 11 C 0.11 3.43 0.70 4.11 0.00 3.43 16 12 C -0.14 -5.17 5.44 30.41 0.17 -5.01 16 13 C 0.53 23.10 4.77 87.93 0.42 23.52 16 14 O -0.57 -30.50 15.39 11.49 0.18 -30.32 16 15 C -0.09 -2.01 4.65 30.42 0.14 -1.87 16 16 C -0.11 -2.04 5.82 30.72 0.18 -1.86 16 17 C -0.11 -2.59 6.07 30.65 0.19 -2.40 16 18 C 0.06 2.07 5.07 86.30 0.44 2.50 16 19 N -0.53 -20.60 4.45 -850.76 -3.78 -24.38 16 20 C 0.22 10.86 3.32 85.56 0.28 11.14 16 21 C -0.53 -29.15 8.45 25.60 0.22 -28.93 16 22 H 0.06 3.23 7.09 -2.91 -0.02 3.21 16 23 C 0.01 0.50 5.46 84.65 0.46 0.96 16 24 N -0.92 -54.89 13.29 21.44 0.28 -54.61 16 25 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 33 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 34 H 0.10 3.08 8.11 -2.39 -0.02 3.06 16 35 H 0.03 1.61 6.80 -2.39 -0.02 1.59 16 36 H 0.07 2.97 7.39 -2.39 -0.02 2.95 16 37 H 0.10 2.28 7.78 -2.39 -0.02 2.26 16 38 H 0.08 2.38 5.80 -2.39 -0.01 2.36 16 39 H 0.09 3.62 7.40 -2.38 -0.02 3.60 16 40 H 0.13 3.80 7.86 -2.38 -0.02 3.78 16 41 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.09 1.56 8.04 -2.39 -0.02 1.54 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.13 7.60 -2.39 -0.02 1.12 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 2.22 6.71 -2.38 -0.02 2.20 16 48 H 0.03 0.86 6.23 -2.38 -0.01 0.85 16 49 H -0.02 -1.11 6.30 -2.39 -0.02 -1.12 16 50 H 0.00 -0.21 5.18 -2.39 -0.01 -0.22 16 51 H 0.26 14.84 8.31 -92.70 -0.77 14.07 16 Total: -1.00 -78.19 389.05 3.36 -74.83 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.92 Total: 21.48 kcal Atomic # 6 Polarization: 16.28 SS G_CDS: 5.40 Total: 21.68 kcal Atomic # 7 Polarization: -97.65 SS G_CDS: -5.04 Total: -102.69 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: 0.06 Total: -61.89 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -78.19 3.36 -74.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030770.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.442 kcal (2) G-P(sol) polarization free energy of solvation -78.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds