Wall clock time and date at job start Tue Mar 31 2020 20:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 O 1.45204 * 109.47208 * 2 1 4 4 C 1.34227 * 116.99916 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00391 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99753 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.46980 * 326.25201 * 6 4 3 8 8 C 1.52995 * 109.47408 * 86.25520 * 6 4 3 9 9 N 1.46504 * 109.46979 * 206.25255 * 6 4 3 10 10 C 1.46923 * 124.34991 * 115.86974 * 9 6 4 11 11 C 1.53811 * 105.35233 * 196.44239 * 10 9 6 12 12 C 1.53988 * 102.46012 * 335.29080 * 11 10 9 13 13 C 1.34492 * 124.35182 * 295.89313 * 9 6 4 14 14 O 1.21279 * 124.94706 * 359.58882 * 13 9 6 15 15 C 1.52235 * 110.64342 * 217.48221 * 11 10 9 16 16 C 1.53259 * 109.35652 * 178.97667 * 15 11 10 17 17 C 1.53126 * 109.06086 * 56.44233 * 16 15 11 18 18 C 1.53043 * 109.40450 * 301.74480 * 17 16 15 19 19 N 1.45975 * 110.79731 * 93.36018 * 11 10 9 20 20 C 1.46901 * 110.99905 * 307.58772 * 19 11 10 21 21 C 1.50704 * 109.46888 * 169.41967 * 20 19 11 22 22 H 1.07995 * 120.00033 * 0.21609 * 21 20 19 23 23 C 1.37879 * 119.99816 * 180.22362 * 21 20 19 24 24 N 1.31513 * 119.99922 * 4.82505 * 23 21 20 25 25 Si 1.86792 * 119.99911 * 184.83094 * 23 21 20 26 26 H 1.48501 * 109.47315 * 359.97438 * 25 23 21 27 27 H 1.48494 * 109.47677 * 119.99760 * 25 23 21 28 28 H 1.48506 * 109.47177 * 239.99662 * 25 23 21 29 29 H 1.08999 * 109.47034 * 300.00062 * 1 2 3 30 30 H 1.08996 * 109.47585 * 60.00349 * 1 2 3 31 31 H 1.09002 * 109.47386 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47034 * 239.99938 * 2 1 3 33 33 H 1.09003 * 109.47211 * 119.99828 * 2 1 3 34 34 H 1.09002 * 109.47682 * 180.02562 * 8 6 4 35 35 H 1.09005 * 109.46951 * 300.00086 * 8 6 4 36 36 H 1.09001 * 109.47310 * 59.99883 * 8 6 4 37 37 H 1.09000 * 110.26925 * 77.47457 * 10 9 6 38 38 H 1.08997 * 110.27103 * 315.41605 * 10 9 6 39 39 H 1.09001 * 110.50616 * 142.77152 * 12 11 10 40 40 H 1.09002 * 110.51131 * 265.47713 * 12 11 10 41 41 H 1.08996 * 109.49120 * 59.00900 * 15 11 10 42 42 H 1.09009 * 109.50950 * 298.94976 * 15 11 10 43 43 H 1.09000 * 109.53942 * 296.56205 * 16 15 11 44 44 H 1.09009 * 109.60727 * 176.35397 * 16 15 11 45 45 H 1.09000 * 109.47832 * 181.76902 * 17 16 15 46 46 H 1.08998 * 109.49606 * 61.72876 * 17 16 15 47 47 H 1.09008 * 109.47181 * 299.77157 * 18 17 16 48 48 H 1.08997 * 109.47298 * 179.76907 * 18 17 16 49 49 H 1.08994 * 109.47665 * 289.42061 * 20 19 11 50 50 H 1.09008 * 109.46969 * 49.42279 * 20 19 11 51 51 H 0.97004 * 120.00005 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9206 2.9374 -0.0012 7 1 3.2697 3.5996 -0.5720 8 6 4.0290 3.4452 1.4380 9 7 5.2518 2.9150 -0.6126 10 6 5.6031 3.6082 -1.8595 11 6 6.9269 2.9739 -2.3190 12 6 7.5168 2.4434 -0.9992 13 6 6.3091 2.2569 -0.1049 14 8 6.2972 1.6087 0.9201 15 6 7.8433 4.0260 -2.9278 16 6 9.1611 3.3681 -3.3514 17 6 8.8586 2.2198 -4.3182 18 6 7.9326 1.2107 -3.6352 19 7 6.6804 1.8774 -3.2505 20 6 5.7226 0.9152 -2.6895 21 6 5.2950 -0.0521 -3.7631 22 1 5.6974 0.0367 -4.7613 23 6 4.3899 -1.0504 -3.4709 24 7 3.8279 -1.1013 -2.2830 25 14 3.9622 -2.3305 -4.7622 26 1 4.7245 -2.0529 -6.0060 27 1 4.3148 -3.6813 -4.2561 28 1 2.5066 -2.2748 -5.0514 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.4452 4.4526 1.4376 35 1 3.0386 3.4618 1.8930 36 1 4.6800 2.7830 2.0089 37 1 5.7393 4.6735 -1.6738 38 1 4.8285 3.4510 -2.6101 39 1 8.0221 1.4915 -1.1622 40 1 8.2029 3.1721 -0.5674 41 1 8.0452 4.8030 -2.1906 42 1 7.3610 4.4683 -3.7996 43 1 9.6734 2.9787 -2.4716 44 1 9.7948 4.1040 -3.8464 45 1 9.7891 1.7268 -4.5994 46 1 8.3718 2.6139 -5.2102 47 1 8.4211 0.8136 -2.7453 48 1 7.7132 0.3948 -4.3238 49 1 6.1936 0.3673 -1.8735 50 1 4.8499 1.4488 -2.3127 51 1 3.1914 -1.8038 -2.0773 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030771.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:16 Heat of formation + Delta-G solvation = -121.865232 kcal Electronic energy + Delta-G solvation = -33386.785185 eV Core-core repulsion = 29285.849932 eV Total energy + Delta-G solvation = -4100.935253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.48076 -40.99722 -39.32824 -37.42823 -36.75029 -35.39542 -34.53838 -33.54232 -32.47143 -31.13265 -29.56713 -28.69743 -26.86459 -26.05628 -25.25003 -23.87339 -23.20052 -22.52677 -21.90705 -20.22777 -19.60539 -18.55120 -18.34705 -17.85726 -17.48421 -17.11179 -16.85588 -16.74036 -15.94031 -15.68358 -15.52304 -15.30196 -15.17754 -14.89482 -14.54037 -14.31214 -14.25259 -13.98794 -13.78235 -13.59235 -13.50966 -13.30670 -13.23303 -13.10451 -12.91227 -12.84645 -12.69021 -12.59363 -12.55285 -12.43404 -12.36793 -12.16822 -11.97230 -11.52768 -11.33807 -11.27012 -11.18572 -11.01820 -10.91375 -10.59204 -10.45738 -9.69285 -8.95225 -8.01739 -6.14761 1.32225 1.33348 1.35692 1.46356 1.67593 1.96484 2.20911 2.40357 3.15707 3.22304 3.42883 3.60576 3.83441 3.91920 3.97010 3.99377 4.06448 4.10617 4.17223 4.23103 4.36394 4.41140 4.52623 4.54463 4.58480 4.59557 4.69627 4.72143 4.75235 4.89002 4.90626 5.00495 5.01990 5.10622 5.12867 5.15038 5.17291 5.22837 5.32496 5.34955 5.40570 5.52891 5.56450 5.64814 5.73888 5.78777 6.15751 6.18432 6.39788 6.77453 6.98319 7.09521 7.29917 7.50342 8.99250 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009225 B = 0.006667 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3034.475129 B = 4198.975048 C = 6577.182999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.059 3.941 3 O -0.367 6.367 4 C 0.411 3.589 5 O -0.466 6.466 6 C 0.169 3.831 7 H 0.146 0.854 8 C -0.145 4.145 9 N -0.606 5.606 10 C 0.112 3.888 11 C 0.102 3.898 12 C -0.176 4.176 13 C 0.524 3.476 14 O -0.566 6.566 15 C -0.089 4.089 16 C -0.115 4.115 17 C -0.108 4.108 18 C 0.062 3.938 19 N -0.523 5.523 20 C 0.227 3.773 21 C -0.536 4.536 22 H 0.052 0.948 23 C 0.011 3.989 24 N -0.879 5.879 25 Si 0.948 3.052 26 H -0.268 1.268 27 H -0.291 1.291 28 H -0.279 1.279 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.104 0.896 35 H 0.092 0.908 36 H 0.042 0.958 37 H 0.128 0.872 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.006 0.994 48 H 0.050 0.950 49 H -0.062 1.062 50 H 0.027 0.973 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.458 16.060 1.628 16.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.015 4.015 3 O -0.285 6.285 4 C 0.249 3.751 5 O -0.347 6.347 6 C 0.064 3.936 7 H 0.164 0.836 8 C -0.203 4.203 9 N -0.340 5.340 10 C -0.009 4.009 11 C 0.010 3.990 12 C -0.218 4.218 13 C 0.314 3.686 14 O -0.444 6.444 15 C -0.127 4.127 16 C -0.152 4.152 17 C -0.146 4.146 18 C -0.066 4.066 19 N -0.246 5.246 20 C 0.101 3.899 21 C -0.575 4.575 22 H 0.070 0.930 23 C -0.190 4.190 24 N -0.517 5.517 25 Si 0.774 3.226 26 H -0.193 1.193 27 H -0.217 1.217 28 H -0.205 1.205 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.062 0.938 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.062 0.938 37 H 0.146 0.854 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.024 0.976 48 H 0.068 0.932 49 H -0.045 1.045 50 H 0.045 0.955 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.254 15.477 1.863 15.639 hybrid contribution -0.127 -2.692 0.249 2.706 sum 1.127 12.785 2.112 13.008 Atomic orbital electron populations 1.21738 0.90060 1.03748 1.03610 1.23054 0.96695 0.80203 1.01544 1.86334 1.24529 1.32635 1.85013 1.24730 0.81251 0.94242 0.74883 1.90912 1.60188 1.43170 1.40459 1.20599 0.83973 0.89984 0.99004 0.83630 1.22014 1.04111 1.02638 0.91543 1.48239 1.07981 1.51544 1.26250 1.22461 0.96863 0.97548 0.84027 1.21677 0.94662 0.93787 0.88859 1.23028 0.96809 1.03991 0.97969 1.21189 0.86441 0.76367 0.84653 1.90614 1.85371 1.41036 1.27419 1.21464 0.94007 0.95281 1.01951 1.21602 0.97159 0.97528 0.98930 1.21574 0.97902 0.96166 0.98970 1.21987 0.89825 0.97134 0.97643 1.61980 1.11193 1.11440 1.40015 1.19250 0.90143 0.89015 0.91523 1.21402 1.25431 1.13782 0.96867 0.92953 1.25755 0.96434 0.99614 0.97192 1.70328 1.27872 1.32542 1.20945 0.85680 0.77912 0.79094 0.79898 1.19283 1.21716 1.20482 0.90315 0.91593 0.89195 0.92290 0.93754 0.87753 0.88885 0.93842 0.85390 0.90820 0.91352 0.84804 0.87991 0.89630 0.92496 0.88835 0.90921 0.91195 0.97576 0.93171 1.04485 0.95493 0.94076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 10.29 71.98 0.74 -2.94 16 2 C 0.06 2.32 6.19 71.98 0.45 2.76 16 3 O -0.37 -14.66 10.22 -51.39 -0.53 -15.18 16 4 C 0.41 18.02 6.63 71.24 0.47 18.49 16 5 O -0.47 -25.49 12.46 28.37 0.35 -25.14 16 6 C 0.17 5.57 3.39 44.24 0.15 5.72 16 7 H 0.15 3.70 8.07 -2.39 -0.02 3.68 16 8 C -0.15 -3.89 9.12 71.98 0.66 -3.23 16 9 N -0.61 -21.21 1.65 -798.81 -1.32 -22.54 16 10 C 0.11 3.18 5.64 86.57 0.49 3.67 16 11 C 0.10 3.10 0.72 4.06 0.00 3.11 16 12 C -0.18 -6.03 4.47 30.41 0.14 -5.89 16 13 C 0.52 21.75 5.31 87.93 0.47 22.22 16 14 O -0.57 -28.62 14.72 15.97 0.24 -28.39 16 15 C -0.09 -1.77 4.66 30.43 0.14 -1.63 16 16 C -0.11 -2.29 5.81 30.72 0.18 -2.11 16 17 C -0.11 -2.85 6.07 30.65 0.19 -2.67 16 18 C 0.06 2.38 5.07 86.30 0.44 2.82 16 19 N -0.52 -21.28 4.45 -851.01 -3.79 -25.07 16 20 C 0.23 12.03 3.07 85.56 0.26 12.30 16 21 C -0.54 -31.13 8.45 25.60 0.22 -30.92 16 22 H 0.05 3.02 7.14 -2.91 -0.02 3.00 16 23 C 0.01 0.66 5.45 84.66 0.46 1.12 16 24 N -0.88 -53.32 11.22 21.45 0.24 -53.08 16 25 Si 0.95 46.16 29.54 68.60 2.03 48.19 16 26 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 27 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.06 2.77 6.54 -2.39 -0.02 2.76 16 33 H 0.04 1.79 8.13 -2.39 -0.02 1.77 16 34 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 36 H 0.04 1.50 6.51 -2.39 -0.02 1.49 16 37 H 0.13 2.25 7.85 -2.39 -0.02 2.23 16 38 H 0.07 2.37 7.43 -2.39 -0.02 2.36 16 39 H 0.07 2.81 5.73 -2.39 -0.01 2.80 16 40 H 0.13 3.43 7.80 -2.39 -0.02 3.41 16 41 H 0.10 1.36 8.06 -2.39 -0.02 1.34 16 42 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.06 1.17 7.57 -2.39 -0.02 1.15 16 44 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.01 0.25 6.19 -2.38 -0.01 0.24 16 48 H 0.05 2.21 6.75 -2.39 -0.02 2.20 16 49 H -0.06 -3.98 6.81 -2.39 -0.02 -4.00 16 50 H 0.03 1.50 4.47 -2.38 -0.01 1.49 16 51 H 0.25 14.65 7.82 -92.71 -0.72 13.93 16 Total: -1.00 -83.99 382.05 3.63 -80.35 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: 0.97 Total: 18.04 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 5.44 Total: 22.81 kcal Atomic # 7 Polarization: -95.81 SS G_CDS: -4.87 Total: -100.68 kcal Atomic # 8 Polarization: -68.77 SS G_CDS: 0.06 Total: -68.71 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -83.99 3.63 -80.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030771.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.510 kcal (2) G-P(sol) polarization free energy of solvation -83.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds