Wall clock time and date at job start Tue Mar 31 2020 20:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47034 * 2 1 4 4 C 1.34234 * 117.00028 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99749 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47120 * 299.99666 * 6 4 3 8 8 C 1.52997 * 109.47466 * 59.99914 * 6 4 3 9 9 N 1.46497 * 109.47081 * 180.02562 * 6 4 3 10 10 C 1.46815 * 124.36699 * 119.72303 * 9 6 4 11 11 C 1.54747 * 105.42116 * 163.00828 * 10 9 6 12 12 C 1.54131 * 101.58350 * 25.28313 * 11 10 9 13 13 C 1.52534 * 110.07796 * 94.47091 * 12 11 10 14 14 C 1.53137 * 109.32267 * 178.08083 * 13 12 11 15 15 N 1.46856 * 109.46091 * 301.73239 * 14 13 12 16 16 C 1.46891 * 111.00264 * 186.33845 * 15 14 13 17 17 C 1.50706 * 109.47147 * 65.66655 * 16 15 14 18 18 H 1.08001 * 119.99433 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00370 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46873 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46951 * 119.99440 * 21 19 17 24 24 H 1.48493 * 109.47441 * 240.00047 * 21 19 17 25 25 C 1.46854 * 111.29436 * 62.17296 * 15 14 13 26 26 C 1.52540 * 110.07535 * 216.50663 * 12 11 10 27 27 C 1.34574 * 124.36182 * 300.02210 * 9 6 4 28 28 O 1.21282 * 125.02669 * 0.66434 * 27 9 6 29 29 H 1.09002 * 109.46790 * 60.00316 * 1 2 3 30 30 H 1.09004 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47430 * 300.00133 * 1 2 3 32 32 H 1.09004 * 109.47695 * 239.99739 * 2 1 3 33 33 H 1.09002 * 109.47315 * 119.99703 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99773 * 8 6 4 35 35 H 1.09001 * 109.46832 * 299.99964 * 8 6 4 36 36 H 1.09004 * 109.47261 * 179.97438 * 8 6 4 37 37 H 1.09009 * 110.23863 * 282.12328 * 10 9 6 38 38 H 1.08998 * 110.24343 * 44.11115 * 10 9 6 39 39 H 1.09001 * 111.17790 * 267.14520 * 11 10 9 40 40 H 1.09000 * 110.86478 * 143.28167 * 11 10 9 41 41 H 1.09003 * 109.49474 * 298.03161 * 13 12 11 42 42 H 1.08994 * 109.49830 * 58.12077 * 13 12 11 43 43 H 1.09007 * 109.47415 * 181.74376 * 14 13 12 44 44 H 1.08997 * 109.48044 * 61.73271 * 14 13 12 45 45 H 1.09005 * 109.47521 * 185.66478 * 16 15 14 46 46 H 1.08997 * 109.47786 * 305.66799 * 16 15 14 47 47 H 0.96998 * 120.00485 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.47518 * 177.82783 * 25 15 14 49 49 H 1.09009 * 109.47803 * 57.82307 * 25 15 14 50 50 H 1.09004 * 109.49450 * 301.86662 * 26 12 11 51 51 H 1.09001 * 109.49727 * 61.92533 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4691 -0.8905 8 6 3.4484 3.6852 1.2485 9 7 5.3836 2.8609 0.0001 10 6 6.2427 3.4172 -1.0525 11 6 7.6583 3.4912 -0.4319 12 6 7.5818 2.3917 0.6455 13 6 8.1271 1.0786 0.0933 14 6 8.0875 0.0118 1.1913 15 7 8.8774 0.4656 2.3431 16 6 8.9875 -0.5926 3.3559 17 6 9.7838 -1.7431 2.7958 18 1 10.1691 -1.6930 1.7881 19 6 10.0195 -2.8597 3.5694 20 7 9.5498 -2.9208 4.7963 21 14 11.0059 -4.2859 2.8749 22 1 11.4184 -3.9714 1.4833 23 1 12.2135 -4.5060 3.7107 24 1 10.1708 -5.5138 2.8786 25 6 8.3176 1.6930 2.9234 26 6 8.3649 2.8165 1.8837 27 6 6.1130 2.2665 0.9623 28 8 5.6564 1.7121 1.9396 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7840 3.1536 2.1390 35 1 2.3599 3.7422 1.2479 36 1 3.8654 4.6924 1.2483 37 1 6.2441 2.7619 -1.9236 38 1 5.9012 4.4143 -1.3303 39 1 7.8404 4.4671 0.0183 40 1 8.4207 3.2573 -1.1750 41 1 7.5153 0.7562 -0.7492 42 1 9.1557 1.2222 -0.2375 43 1 8.5054 -0.9194 0.8085 44 1 7.0555 -0.1532 1.5007 45 1 9.4900 -0.1992 4.2396 46 1 7.9909 -0.9395 3.6289 47 1 9.7159 -3.7062 5.3407 48 1 8.9021 1.9815 3.7969 49 1 7.2837 1.5160 3.2202 50 1 9.4010 3.0142 1.6088 51 1 7.9211 3.7196 2.3027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274030793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:07 Heat of formation + Delta-G solvation = -111.509815 kcal Electronic energy + Delta-G solvation = -31748.798493 eV Core-core repulsion = 27648.312284 eV Total energy + Delta-G solvation = -4100.486209 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40445 -40.27570 -37.55730 -36.54374 -36.34995 -34.59428 -32.74547 -31.94186 -31.11769 -30.30718 -28.76644 -26.93472 -25.52784 -24.76783 -23.36741 -22.70576 -21.99586 -21.83011 -20.74129 -19.90470 -18.53353 -17.63264 -17.09497 -16.75122 -16.16753 -16.06092 -15.51585 -15.16847 -14.96682 -14.33095 -14.25716 -14.04073 -13.91857 -13.74902 -13.43942 -13.25096 -13.18401 -13.02193 -12.70624 -12.57003 -12.35168 -12.16316 -12.10465 -12.01376 -11.92670 -11.78319 -11.72535 -11.51666 -11.39936 -11.00201 -10.68004 -10.65528 -10.50728 -10.48269 -10.44112 -10.03589 -9.91214 -9.50857 -9.21289 -8.97364 -8.85662 -8.31029 -6.94297 -5.90223 -3.90808 2.10668 2.21739 2.81706 3.00787 3.38172 3.44690 3.49952 4.23489 4.40598 4.46537 4.52688 4.63407 4.66960 4.71309 4.73209 4.77409 4.96376 5.06781 5.18120 5.18891 5.30044 5.33302 5.38061 5.42984 5.45177 5.50537 5.53477 5.69504 5.71456 5.75051 5.85796 5.90179 6.05415 6.08179 6.16808 6.28259 6.30692 6.31489 6.42378 6.56082 6.75318 6.86598 6.94586 7.11736 7.49729 7.59588 7.67199 7.94561 8.26860 8.36513 8.42216 8.74554 9.17483 9.72494 11.20845 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003504 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.103142 B = 7989.502169 C = 9465.636848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.061 3.939 3 O -0.361 6.361 4 C 0.443 3.557 5 O -0.476 6.476 6 C 0.173 3.827 7 H 0.122 0.878 8 C -0.162 4.162 9 N -0.620 5.620 10 C 0.107 3.893 11 C -0.125 4.125 12 C -0.086 4.086 13 C -0.091 4.091 14 C 0.062 3.938 15 N -0.534 5.534 16 C 0.195 3.805 17 C -0.502 4.502 18 H 0.063 0.937 19 C 0.053 3.947 20 N -0.899 5.899 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.286 1.286 25 C 0.042 3.958 26 C -0.088 4.088 27 C 0.539 3.461 28 O -0.496 6.496 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.032 0.968 45 H 0.028 0.972 46 H -0.010 1.010 47 H 0.259 0.741 48 H 0.063 0.937 49 H 0.049 0.951 50 H 0.077 0.923 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.203 17.512 -14.629 27.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.282 3.718 5 O -0.360 6.360 6 C 0.067 3.933 7 H 0.140 0.860 8 C -0.220 4.220 9 N -0.358 5.358 10 C -0.015 4.015 11 C -0.162 4.162 12 C -0.090 4.090 13 C -0.129 4.129 14 C -0.067 4.067 15 N -0.259 5.259 16 C 0.069 3.931 17 C -0.540 4.540 18 H 0.081 0.919 19 C -0.148 4.148 20 N -0.539 5.539 21 Si 0.724 3.276 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.086 4.086 26 C -0.127 4.127 27 C 0.328 3.672 28 O -0.368 6.368 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.099 0.901 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.008 0.992 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.096 0.904 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.849 16.852 -14.086 26.513 hybrid contribution -0.364 -1.289 -0.095 1.343 sum -15.213 15.563 -14.182 25.976 Atomic orbital electron populations 1.21794 0.92576 1.03017 1.03339 1.23030 0.95210 0.80101 1.02892 1.86443 1.24289 1.32603 1.84483 1.24069 0.80950 0.93161 0.73597 1.90760 1.60133 1.42429 1.42656 1.20267 0.80462 0.89973 1.02555 0.85991 1.22122 1.02258 1.00586 0.97003 1.48270 1.03501 1.59222 1.24763 1.22159 0.90379 0.98706 0.90281 1.22741 0.95801 0.99304 0.98380 1.21059 0.92666 0.97740 0.97536 1.21458 1.00810 0.92572 0.98086 1.21931 0.96363 0.96977 0.91394 1.62054 1.49037 1.05261 1.09534 1.19655 0.95514 0.88116 0.89785 1.21229 1.32652 1.00090 1.00078 0.91906 1.24997 0.96293 0.98557 0.94930 1.69984 1.46221 1.29370 1.08360 0.86475 0.79753 0.82250 0.79137 1.19693 1.21092 1.21226 1.22158 0.99383 0.91188 0.95889 1.21398 0.99693 0.97830 0.93735 1.20688 0.88856 0.76079 0.81613 1.90687 1.76789 1.41026 1.28322 0.91613 0.90207 0.91444 0.91317 0.90994 0.90357 0.90157 0.90732 0.91222 0.90387 0.89805 0.88870 0.92308 0.90258 0.90098 0.95006 0.95410 0.99206 0.93139 0.91863 0.93276 0.90449 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 10.29 37.16 0.38 -0.70 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.29 10.12 -39.27 -0.40 -4.69 16 4 C 0.44 6.15 6.95 36.00 0.25 6.40 16 5 O -0.48 -8.70 14.61 -24.25 -0.35 -9.05 16 6 C 0.17 1.83 3.39 -69.09 -0.23 1.59 16 7 H 0.12 0.81 8.07 -51.93 -0.42 0.39 16 8 C -0.16 -1.56 9.13 37.16 0.34 -1.22 16 9 N -0.62 -7.56 2.63 -166.12 -0.44 -8.00 16 10 C 0.11 0.91 7.31 -2.95 -0.02 0.89 16 11 C -0.12 -1.16 6.22 -25.22 -0.16 -1.32 16 12 C -0.09 -1.25 0.55 -155.50 -0.09 -1.34 16 13 C -0.09 -1.52 4.76 -26.90 -0.13 -1.65 16 14 C 0.06 1.37 5.08 -3.78 -0.02 1.35 16 15 N -0.53 -12.64 4.63 -235.97 -1.09 -13.73 16 16 C 0.19 5.54 4.72 -4.98 -0.02 5.52 16 17 C -0.50 -14.95 8.42 -34.44 -0.29 -15.24 16 18 H 0.06 1.84 7.11 -52.49 -0.37 1.47 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 20 N -0.90 -28.21 13.29 55.43 0.74 -27.48 16 21 Si 0.90 22.63 29.54 -169.99 -5.02 17.61 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.04 0.87 5.24 -3.78 -0.02 0.85 16 26 C -0.09 -1.37 4.77 -26.89 -0.13 -1.50 16 27 C 0.54 8.77 5.01 -11.04 -0.06 8.71 16 28 O -0.50 -10.21 11.65 -9.73 -0.11 -10.33 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.88 8.13 -51.93 -0.42 0.45 16 34 H 0.08 1.03 6.82 -51.93 -0.35 0.68 16 35 H 0.08 0.63 8.11 -51.93 -0.42 0.21 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.66 7.89 -51.93 -0.41 0.25 16 40 H 0.09 0.74 7.87 -51.93 -0.41 0.33 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 43 H 0.08 1.93 6.68 -51.93 -0.35 1.58 16 44 H 0.03 0.80 6.68 -51.93 -0.35 0.45 16 45 H 0.03 0.83 7.98 -51.93 -0.41 0.42 16 46 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 47 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 48 H 0.06 1.28 8.01 -51.93 -0.42 0.87 16 49 H 0.05 1.12 5.79 -51.92 -0.30 0.82 16 50 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -37.57 396.41 -9.60 -47.17 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.84 Total: -2.20 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: -0.06 Total: 4.72 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: -0.79 Total: -49.21 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.87 Total: -24.07 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.57 -9.60 -47.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.340 kcal (2) G-P(sol) polarization free energy of solvation -37.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds