Wall clock time and date at job start Tue Mar 31 2020 20:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45203 * 109.47034 * 2 1 4 4 C 1.34234 * 117.00028 * 179.97438 * 3 2 1 5 5 O 1.20822 * 120.00136 * 359.97438 * 4 3 2 6 6 C 1.50697 * 119.99749 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.47120 * 299.99666 * 6 4 3 8 8 C 1.52997 * 109.47466 * 59.99914 * 6 4 3 9 9 N 1.46497 * 109.47081 * 180.02562 * 6 4 3 10 10 C 1.46815 * 124.36699 * 119.72303 * 9 6 4 11 11 C 1.54747 * 105.42116 * 163.00828 * 10 9 6 12 12 C 1.54131 * 101.58350 * 25.28313 * 11 10 9 13 13 C 1.52534 * 110.07796 * 94.47091 * 12 11 10 14 14 C 1.53137 * 109.32267 * 178.08083 * 13 12 11 15 15 N 1.46856 * 109.46091 * 301.73239 * 14 13 12 16 16 C 1.46891 * 111.00264 * 186.33845 * 15 14 13 17 17 C 1.50706 * 109.47147 * 65.66655 * 16 15 14 18 18 H 1.08001 * 119.99433 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00370 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.46873 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46951 * 119.99440 * 21 19 17 24 24 H 1.48493 * 109.47441 * 240.00047 * 21 19 17 25 25 C 1.46854 * 111.29436 * 62.17296 * 15 14 13 26 26 C 1.52540 * 110.07535 * 216.50663 * 12 11 10 27 27 C 1.34574 * 124.36182 * 300.02210 * 9 6 4 28 28 O 1.21282 * 125.02669 * 0.66434 * 27 9 6 29 29 H 1.09002 * 109.46790 * 60.00316 * 1 2 3 30 30 H 1.09004 * 109.46632 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47430 * 300.00133 * 1 2 3 32 32 H 1.09004 * 109.47695 * 239.99739 * 2 1 3 33 33 H 1.09002 * 109.47315 * 119.99703 * 2 1 3 34 34 H 1.09002 * 109.47153 * 59.99773 * 8 6 4 35 35 H 1.09001 * 109.46832 * 299.99964 * 8 6 4 36 36 H 1.09004 * 109.47261 * 179.97438 * 8 6 4 37 37 H 1.09009 * 110.23863 * 282.12328 * 10 9 6 38 38 H 1.08998 * 110.24343 * 44.11115 * 10 9 6 39 39 H 1.09001 * 111.17790 * 267.14520 * 11 10 9 40 40 H 1.09000 * 110.86478 * 143.28167 * 11 10 9 41 41 H 1.09003 * 109.49474 * 298.03161 * 13 12 11 42 42 H 1.08994 * 109.49830 * 58.12077 * 13 12 11 43 43 H 1.09007 * 109.47415 * 181.74376 * 14 13 12 44 44 H 1.08997 * 109.48044 * 61.73271 * 14 13 12 45 45 H 1.09005 * 109.47521 * 185.66478 * 16 15 14 46 46 H 1.08997 * 109.47786 * 305.66799 * 16 15 14 47 47 H 0.96998 * 120.00485 * 180.02562 * 20 19 17 48 48 H 1.08995 * 109.47518 * 177.82783 * 25 15 14 49 49 H 1.09009 * 109.47803 * 57.82307 * 25 15 14 50 50 H 1.09004 * 109.49450 * 301.86662 * 26 12 11 51 51 H 1.09001 * 109.49727 * 61.92533 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9375 0.0000 7 1 3.5851 3.4691 -0.8905 8 6 3.4484 3.6852 1.2485 9 7 5.3836 2.8609 0.0001 10 6 6.2427 3.4172 -1.0525 11 6 7.6583 3.4912 -0.4319 12 6 7.5818 2.3917 0.6455 13 6 8.1271 1.0786 0.0933 14 6 8.0875 0.0118 1.1913 15 7 8.8774 0.4656 2.3431 16 6 8.9875 -0.5926 3.3559 17 6 9.7838 -1.7431 2.7958 18 1 10.1691 -1.6930 1.7881 19 6 10.0195 -2.8597 3.5694 20 7 9.5498 -2.9208 4.7963 21 14 11.0059 -4.2859 2.8749 22 1 11.4184 -3.9714 1.4833 23 1 12.2135 -4.5060 3.7107 24 1 10.1708 -5.5138 2.8786 25 6 8.3176 1.6930 2.9234 26 6 8.3649 2.8165 1.8837 27 6 6.1130 2.2665 0.9623 28 8 5.6564 1.7121 1.9396 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7840 3.1536 2.1390 35 1 2.3599 3.7422 1.2479 36 1 3.8654 4.6924 1.2483 37 1 6.2441 2.7619 -1.9236 38 1 5.9012 4.4143 -1.3303 39 1 7.8404 4.4671 0.0183 40 1 8.4207 3.2573 -1.1750 41 1 7.5153 0.7562 -0.7492 42 1 9.1557 1.2222 -0.2375 43 1 8.5054 -0.9194 0.8085 44 1 7.0555 -0.1532 1.5007 45 1 9.4900 -0.1992 4.2396 46 1 7.9909 -0.9395 3.6289 47 1 9.7159 -3.7062 5.3407 48 1 8.9021 1.9815 3.7969 49 1 7.2837 1.5160 3.2202 50 1 9.4010 3.0142 1.6088 51 1 7.9211 3.7196 2.3027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:05 Heat of formation + Delta-G solvation = -137.943392 kcal Electronic energy + Delta-G solvation = -31749.944739 eV Core-core repulsion = 27648.312284 eV Total energy + Delta-G solvation = -4101.632454 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.48955 -41.38847 -39.01672 -37.74018 -37.50674 -35.97915 -34.67268 -33.05236 -32.24649 -31.85701 -29.91478 -28.65815 -26.67984 -26.05920 -24.43006 -24.24477 -23.62215 -22.79096 -22.10441 -21.31687 -19.67530 -18.71621 -18.51876 -18.11623 -17.76190 -17.23810 -16.80371 -16.45730 -16.14364 -16.00105 -15.76145 -15.34872 -15.20256 -15.01113 -14.72455 -14.51418 -14.32354 -14.08453 -13.91919 -13.66450 -13.52791 -13.48846 -13.31655 -13.21538 -12.98534 -12.96415 -12.85480 -12.69765 -12.67115 -12.57969 -12.54667 -12.26023 -12.09597 -12.01820 -11.63500 -11.59252 -11.48092 -11.21571 -10.99297 -10.68458 -10.42328 -9.80372 -8.99255 -8.24186 -6.35962 1.06468 1.27107 1.35864 1.38308 1.52258 1.75786 2.04924 2.36945 3.06817 3.23223 3.39372 3.52220 3.57883 3.74718 3.84513 3.90390 3.91329 4.00313 4.02524 4.13795 4.24034 4.31671 4.42104 4.53534 4.55966 4.63490 4.64578 4.67407 4.75500 4.78425 4.83523 4.85213 4.86555 4.95352 5.02639 5.06476 5.08054 5.14272 5.14555 5.19031 5.23701 5.30724 5.36481 5.37739 5.56659 5.61821 6.00735 6.08008 6.30006 6.62077 6.62751 6.80594 7.25983 7.33780 8.88185 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011500 B = 0.003504 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2434.103142 B = 7989.502169 C = 9465.636848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.438 3.562 5 O -0.532 6.532 6 C 0.169 3.831 7 H 0.177 0.823 8 C -0.154 4.154 9 N -0.615 5.615 10 C 0.101 3.899 11 C -0.109 4.109 12 C -0.093 4.093 13 C -0.079 4.079 14 C 0.067 3.933 15 N -0.527 5.527 16 C 0.210 3.790 17 C -0.522 4.522 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.978 3.022 22 H -0.258 1.258 23 H -0.272 1.272 24 H -0.280 1.280 25 C 0.038 3.962 26 C -0.077 4.077 27 C 0.526 3.474 28 O -0.557 6.557 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.078 0.922 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.055 0.945 44 H -0.011 1.011 45 H 0.002 0.998 46 H -0.061 1.061 47 H 0.265 0.735 48 H 0.057 0.943 49 H 0.018 0.982 50 H 0.097 0.903 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.868 20.418 -18.447 31.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.280 3.720 5 O -0.420 6.420 6 C 0.065 3.935 7 H 0.194 0.806 8 C -0.212 4.212 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.147 4.147 12 C -0.097 4.097 13 C -0.117 4.117 14 C -0.061 4.061 15 N -0.251 5.251 16 C 0.084 3.916 17 C -0.560 4.560 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.580 5.580 21 Si 0.801 3.199 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.206 1.206 25 C -0.090 4.090 26 C -0.115 4.115 27 C 0.315 3.685 28 O -0.433 6.433 29 H 0.100 0.900 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.117 0.883 36 H 0.120 0.880 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.087 0.913 42 H 0.119 0.881 43 H 0.074 0.926 44 H 0.008 0.992 45 H 0.020 0.980 46 H -0.044 1.044 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.036 0.964 50 H 0.115 0.885 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.541 19.829 -17.962 30.451 hybrid contribution -0.589 -2.215 1.163 2.570 sum -15.130 17.614 -16.800 28.660 Atomic orbital electron populations 1.21793 0.89406 1.04340 1.04184 1.23212 0.97648 0.79589 1.01526 1.86458 1.23527 1.33080 1.83871 1.24991 0.81057 0.94199 0.71779 1.90748 1.61312 1.44489 1.45410 1.20728 0.79555 0.88104 1.05154 0.80585 1.22084 1.03531 1.01018 0.94535 1.48410 1.04453 1.57750 1.24414 1.22565 0.89182 1.01202 0.89023 1.22794 0.97169 0.97976 0.96729 1.21107 0.91306 0.98452 0.98837 1.21363 1.02540 0.91921 0.95854 1.21871 0.93177 0.98556 0.92508 1.62074 1.49657 1.04764 1.08630 1.19314 0.92267 0.89637 0.90399 1.21491 1.33133 1.00969 1.00390 0.91509 1.26083 0.97273 1.01811 0.95121 1.70138 1.47311 1.30580 1.09966 0.85213 0.78031 0.77650 0.78984 1.18207 1.19725 1.20608 1.22271 0.97097 0.91715 0.97917 1.21360 1.01445 0.96072 0.92655 1.21108 0.90124 0.75715 0.81598 1.90669 1.77923 1.43609 1.31145 0.90022 0.88680 0.91224 0.91507 0.93718 0.94887 0.88319 0.87992 0.90411 0.85584 0.87163 0.86511 0.91287 0.88127 0.92642 0.99227 0.97970 1.04357 0.92667 0.92492 0.96356 0.88466 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 10.29 71.98 0.74 -1.17 16 2 C 0.05 1.21 6.19 71.98 0.45 1.66 16 3 O -0.35 -8.39 10.12 -51.45 -0.52 -8.91 16 4 C 0.44 12.29 6.95 71.23 0.50 12.78 16 5 O -0.53 -20.67 14.61 27.24 0.40 -20.28 16 6 C 0.17 3.18 3.39 44.24 0.15 3.33 16 7 H 0.18 1.41 8.07 -2.39 -0.02 1.39 16 8 C -0.15 -2.71 9.13 71.98 0.66 -2.05 16 9 N -0.62 -13.49 2.63 -797.99 -2.10 -15.59 16 10 C 0.10 1.17 7.31 86.92 0.64 1.80 16 11 C -0.11 -1.45 6.22 31.57 0.20 -1.26 16 12 C -0.09 -2.55 0.55 -52.83 -0.03 -2.58 16 13 C -0.08 -2.58 4.76 30.49 0.15 -2.44 16 14 C 0.07 3.20 5.08 86.36 0.44 3.64 16 15 N -0.53 -26.59 4.63 -900.46 -4.17 -30.76 16 16 C 0.21 13.04 4.72 85.56 0.40 13.45 16 17 C -0.52 -32.68 8.42 25.60 0.22 -32.46 16 18 H 0.07 4.04 7.11 -2.91 -0.02 4.02 16 19 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 20 N -0.94 -61.66 13.29 21.45 0.28 -61.37 16 21 Si 0.98 47.44 29.54 68.60 2.03 49.46 16 22 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 23 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 24 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 25 C 0.04 1.67 5.24 86.36 0.45 2.12 16 26 C -0.08 -2.31 4.77 30.49 0.15 -2.16 16 27 C 0.53 17.13 5.01 87.71 0.44 17.57 16 28 O -0.56 -24.79 11.65 11.58 0.13 -24.66 16 29 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 34 H 0.03 0.90 6.82 -2.39 -0.02 0.88 16 35 H 0.10 1.33 8.11 -2.39 -0.02 1.31 16 36 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 37 H 0.08 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.13 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.11 0.98 7.89 -2.39 -0.02 0.96 16 40 H 0.12 1.10 7.87 -2.39 -0.02 1.08 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 43 H 0.06 2.83 6.68 -2.38 -0.02 2.82 16 44 H -0.01 -0.59 6.68 -2.39 -0.02 -0.61 16 45 H 0.00 0.14 7.98 -2.38 -0.02 0.13 16 46 H -0.06 -4.32 8.12 -2.39 -0.02 -4.34 16 47 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 48 H 0.06 2.47 8.01 -2.39 -0.02 2.45 16 49 H 0.02 0.92 5.79 -2.38 -0.01 0.91 16 50 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 51 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -94.61 396.41 2.95 -91.66 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.90 Total: 8.09 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 5.99 Total: 12.35 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.99 Total: -107.72 kcal Atomic # 8 Polarization: -53.85 SS G_CDS: 0.01 Total: -53.84 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.46 kcal Total: -94.61 2.95 -91.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.284 kcal (2) G-P(sol) polarization free energy of solvation -94.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds