Wall clock time and date at job start Tue Mar 31 2020 20:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.47242 * 2 1 4 4 C 1.34231 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99976 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99651 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.47581 * 59.99595 * 6 4 3 8 8 C 1.53005 * 109.47101 * 299.99733 * 6 4 3 9 9 N 1.46501 * 109.47176 * 180.02562 * 6 4 3 10 10 C 1.46910 * 124.37407 * 240.00007 * 9 6 4 11 11 C 1.54750 * 105.53393 * 163.22093 * 10 9 6 12 12 C 1.53377 * 101.44429 * 24.31097 * 11 10 9 13 13 C 1.53943 * 111.17395 * 97.85794 * 12 11 10 14 14 C 1.55137 * 101.54307 * 154.78510 * 13 12 11 15 15 N 1.47958 * 104.94180 * 324.21546 * 14 13 12 16 16 C 1.46900 * 110.99963 * 146.10009 * 15 14 13 17 17 C 1.53002 * 109.47026 * 69.21622 * 16 15 14 18 18 C 1.50696 * 109.47372 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00082 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00317 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46779 * 89.99976 * 22 20 18 24 24 H 1.48495 * 109.47197 * 209.99915 * 22 20 18 25 25 H 1.48494 * 109.46890 * 330.00324 * 22 20 18 26 26 C 1.47765 * 108.52269 * 23.86646 * 15 14 13 27 27 C 1.34827 * 124.37830 * 59.99935 * 9 6 4 28 28 O 1.21280 * 125.18259 * 1.14628 * 27 9 6 29 29 H 1.08997 * 109.47269 * 59.99359 * 1 2 3 30 30 H 1.08993 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46817 * 300.00068 * 1 2 3 32 32 H 1.09002 * 109.47220 * 240.00274 * 2 1 3 33 33 H 1.08997 * 109.47653 * 120.00262 * 2 1 3 34 34 H 1.09005 * 109.46783 * 60.00215 * 8 6 4 35 35 H 1.09004 * 109.47409 * 179.97438 * 8 6 4 36 36 H 1.08993 * 109.47005 * 299.99953 * 8 6 4 37 37 H 1.08996 * 110.23688 * 44.19829 * 10 9 6 38 38 H 1.09001 * 110.23321 * 282.23591 * 10 9 6 39 39 H 1.09000 * 111.02950 * 266.27197 * 11 10 9 40 40 H 1.08996 * 111.03614 * 142.35520 * 11 10 9 41 41 H 1.09000 * 110.98885 * 36.72728 * 13 12 11 42 42 H 1.08999 * 111.05911 * 272.87546 * 13 12 11 43 43 H 1.08997 * 110.34622 * 205.35004 * 14 13 12 44 44 H 1.09001 * 110.43371 * 83.12386 * 14 13 12 45 45 H 1.09000 * 109.47021 * 189.21262 * 16 15 14 46 46 H 1.08992 * 109.47498 * 309.21774 * 16 15 14 47 47 H 1.09006 * 109.47025 * 300.00140 * 17 16 15 48 48 H 1.09001 * 109.47361 * 59.99574 * 17 16 15 49 49 H 0.96999 * 120.00770 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.97972 * 117.49911 * 26 15 14 51 51 H 1.09000 * 109.97900 * 238.74790 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4691 0.8904 8 6 3.4487 3.6850 -1.2486 9 7 5.3838 2.8607 -0.0014 10 6 6.2448 3.4219 1.0484 11 6 7.6232 2.7443 0.8601 12 6 7.5713 2.3557 -0.6227 13 6 8.3017 3.3926 -1.4951 14 6 8.6982 2.5375 -2.7273 15 7 9.0177 1.2015 -2.1776 16 6 8.6370 0.1401 -3.1191 17 6 9.5594 0.1855 -4.3390 18 6 9.1694 -0.9037 -5.3046 19 1 8.3462 -1.5628 -5.0714 20 6 9.8634 -1.0588 -6.4858 21 7 10.8661 -0.2566 -6.7696 22 14 9.3803 -2.4095 -7.6825 23 1 8.3674 -1.8879 -8.6350 24 1 10.5805 -2.8585 -8.4329 25 1 8.8090 -3.5556 -6.9308 26 6 8.3129 1.0435 -0.8885 27 6 6.1141 2.2659 -0.9661 28 8 5.6616 1.7386 -1.9601 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3601 3.7421 -1.2481 35 1 3.8649 4.6924 -1.2481 36 1 3.7842 3.1534 -2.1390 37 1 5.8406 3.1871 2.0330 38 1 6.3352 4.5011 0.9248 39 1 7.7147 1.8614 1.4928 40 1 8.4341 3.4468 1.0522 41 1 9.1851 3.7781 -0.9862 42 1 7.6329 4.2043 -1.7815 43 1 9.5726 2.9639 -3.2190 44 1 7.8656 2.4700 -3.4275 45 1 8.7291 -0.8297 -2.6300 46 1 7.6056 0.2898 -3.4378 47 1 9.4674 1.1553 -4.8281 48 1 10.5910 0.0358 -4.0203 49 1 11.3542 -0.3655 -7.6008 50 1 7.6017 0.2199 -0.9513 51 1 9.0321 0.8542 -0.0916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:53 Heat of formation + Delta-G solvation = -110.853192 kcal Electronic energy + Delta-G solvation = -31102.153866 eV Core-core repulsion = 27001.696131 eV Total energy + Delta-G solvation = -4100.457735 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.50969 -40.40707 -37.90839 -36.72473 -36.42705 -34.51796 -33.07409 -32.01862 -31.23555 -29.44257 -28.80538 -27.79042 -25.59871 -24.68017 -23.63011 -23.09059 -22.01381 -21.60958 -20.68306 -19.72314 -18.98154 -17.79319 -17.20052 -16.88543 -16.30793 -16.11121 -16.01806 -15.27739 -14.82095 -14.66954 -14.36030 -14.28935 -13.96315 -13.80917 -13.75559 -13.38689 -13.11843 -12.96044 -12.82699 -12.61088 -12.52370 -12.31009 -12.26191 -12.12843 -12.03887 -11.90434 -11.84312 -11.35647 -11.19633 -10.95668 -10.87094 -10.78283 -10.76888 -10.60390 -10.58022 -10.39830 -9.68581 -9.50836 -9.19992 -9.01069 -8.99807 -8.22787 -7.60111 -5.88549 -3.89694 1.97984 2.08566 2.67018 2.84781 3.39975 3.45140 3.49989 4.08943 4.23628 4.36453 4.47672 4.50485 4.54083 4.57607 4.63228 4.65376 4.68672 4.97736 4.98242 4.98979 5.08606 5.20089 5.28781 5.32573 5.42287 5.45423 5.47253 5.51556 5.60754 5.62679 5.66725 5.74860 5.85867 5.87319 6.01994 6.14437 6.19262 6.28888 6.32547 6.40708 6.54882 6.75580 6.89137 7.15472 7.54636 7.61339 7.62913 7.90285 8.04091 8.18417 8.21599 8.58003 9.17667 9.73059 11.23056 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.003137 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.822750 B = 8923.069292 C =10745.053672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.359 6.359 4 C 0.446 3.554 5 O -0.482 6.482 6 C 0.173 3.827 7 H 0.124 0.876 8 C -0.163 4.163 9 N -0.620 5.620 10 C 0.108 3.892 11 C -0.117 4.117 12 C -0.116 4.116 13 C -0.104 4.104 14 C 0.048 3.952 15 N -0.523 5.523 16 C 0.058 3.942 17 C 0.031 3.969 18 C -0.517 4.517 19 H 0.053 0.947 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.067 3.933 27 C 0.543 3.457 28 O -0.496 6.496 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.030 0.970 47 H 0.015 0.985 48 H 0.023 0.977 49 H 0.259 0.741 50 H 0.056 0.944 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 12.031 21.741 30.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.276 6.276 4 C 0.286 3.714 5 O -0.366 6.366 6 C 0.068 3.932 7 H 0.142 0.858 8 C -0.221 4.221 9 N -0.357 5.357 10 C -0.015 4.015 11 C -0.155 4.155 12 C -0.120 4.120 13 C -0.142 4.142 14 C -0.080 4.080 15 N -0.247 5.247 16 C -0.069 4.069 17 C -0.006 4.006 18 C -0.556 4.556 19 H 0.071 0.929 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.208 1.208 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.062 4.062 27 C 0.330 3.670 28 O -0.368 6.368 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.105 0.895 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.070 0.930 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.033 0.967 48 H 0.041 0.959 49 H 0.069 0.931 50 H 0.075 0.925 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.724 11.366 21.114 29.235 hybrid contribution -1.180 -0.948 -0.742 1.686 sum -17.904 10.418 20.372 29.054 Atomic orbital electron populations 1.21799 0.92484 1.03065 1.03439 1.23042 0.95309 0.80029 1.02828 1.86453 1.24164 1.32668 1.84344 1.24053 0.80970 0.93099 0.73327 1.90727 1.60253 1.42533 1.43099 1.20299 0.80236 0.89957 1.02758 0.85795 1.22143 1.02386 1.00675 0.96932 1.48300 1.03612 1.58719 1.25099 1.22184 0.90474 0.98083 0.90738 1.22546 0.96408 1.01755 0.94789 1.21776 0.93339 1.00112 0.96766 1.22570 0.99258 0.96136 0.96232 1.23065 1.00480 0.89059 0.95398 1.63892 1.54795 1.02875 1.03144 1.22532 0.98425 0.91929 0.94017 1.19037 0.94743 0.96797 0.90058 1.21231 1.15654 1.15458 1.03280 0.92879 1.24980 0.95077 0.96257 0.98032 1.69975 1.20917 1.38136 1.24456 0.86614 0.77867 0.82417 0.81230 1.20756 1.21245 1.19910 1.22595 0.95394 0.93781 0.94409 1.20318 0.88423 0.76179 0.82050 1.90749 1.76841 1.42075 1.27091 0.91378 0.90168 0.91557 0.91001 0.91321 0.90054 0.90628 0.90268 0.90536 0.90649 0.89635 0.88563 0.89532 0.91227 0.89995 0.92997 0.92564 0.95207 0.96690 0.95896 0.93139 0.92521 0.90189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -3.96 10.12 -39.26 -0.40 -4.36 16 4 C 0.45 5.75 6.97 36.00 0.25 6.00 16 5 O -0.48 -8.16 14.68 -23.87 -0.35 -8.51 16 6 C 0.17 1.69 3.39 -69.08 -0.23 1.46 16 7 H 0.12 0.72 8.07 -51.93 -0.42 0.30 16 8 C -0.16 -1.52 9.13 37.16 0.34 -1.18 16 9 N -0.62 -6.98 2.64 -166.30 -0.44 -7.42 16 10 C 0.11 0.79 7.32 -2.90 -0.02 0.77 16 11 C -0.12 -1.01 6.15 -25.61 -0.16 -1.17 16 12 C -0.12 -1.55 0.66 -155.29 -0.10 -1.66 16 13 C -0.10 -1.36 6.03 -25.11 -0.15 -1.51 16 14 C 0.05 0.87 5.73 -2.11 -0.01 0.86 16 15 N -0.52 -10.51 5.18 -231.55 -1.20 -11.70 16 16 C 0.06 1.40 4.51 -3.82 -0.02 1.38 16 17 C 0.03 0.88 5.02 -27.88 -0.14 0.74 16 18 C -0.52 -15.75 9.11 -34.44 -0.31 -16.06 16 19 H 0.05 1.59 7.74 -52.49 -0.41 1.19 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.90 -28.13 13.29 55.43 0.74 -27.40 16 22 Si 0.89 22.86 29.54 -169.99 -5.02 17.84 16 23 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.07 1.12 5.94 -3.32 -0.02 1.10 16 27 C 0.54 8.39 5.25 -11.31 -0.06 8.33 16 28 O -0.50 -9.99 15.32 -8.16 -0.12 -10.11 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 33 H 0.07 0.64 8.13 -51.93 -0.42 0.22 16 34 H 0.08 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 1.03 6.77 -51.93 -0.35 0.68 16 37 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 40 H 0.10 0.62 7.63 -51.93 -0.40 0.23 16 41 H 0.09 0.95 7.76 -51.93 -0.40 0.55 16 42 H 0.07 0.83 8.00 -51.93 -0.42 0.41 16 43 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 44 H 0.05 1.08 7.62 -51.93 -0.40 0.68 16 45 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 46 H 0.03 0.77 7.85 -51.93 -0.41 0.36 16 47 H 0.01 0.44 7.49 -51.93 -0.39 0.05 16 48 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 50 H 0.06 1.08 7.24 -51.93 -0.38 0.71 16 51 H 0.08 1.17 7.79 -51.93 -0.40 0.76 16 LS Contribution 406.96 15.07 6.13 6.13 Total: -1.00 -38.20 406.96 -9.76 -47.97 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.98 Total: -3.37 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -0.12 Total: 0.93 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: -0.90 Total: -46.52 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.87 Total: -22.98 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.20 -9.76 -47.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.888 kcal (2) G-P(sol) polarization free energy of solvation -38.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds