Wall clock time and date at job start Tue Mar 31 2020 20:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45208 * 109.47242 * 2 1 4 4 C 1.34231 * 116.99725 * 180.02562 * 3 2 1 5 5 O 1.20819 * 119.99976 * 0.02562 * 4 3 2 6 6 C 1.50694 * 119.99651 * 180.02562 * 4 3 2 7 7 H 1.09004 * 109.47581 * 59.99595 * 6 4 3 8 8 C 1.53005 * 109.47101 * 299.99733 * 6 4 3 9 9 N 1.46501 * 109.47176 * 180.02562 * 6 4 3 10 10 C 1.46910 * 124.37407 * 240.00007 * 9 6 4 11 11 C 1.54750 * 105.53393 * 163.22093 * 10 9 6 12 12 C 1.53377 * 101.44429 * 24.31097 * 11 10 9 13 13 C 1.53943 * 111.17395 * 97.85794 * 12 11 10 14 14 C 1.55137 * 101.54307 * 154.78510 * 13 12 11 15 15 N 1.47958 * 104.94180 * 324.21546 * 14 13 12 16 16 C 1.46900 * 110.99963 * 146.10009 * 15 14 13 17 17 C 1.53002 * 109.47026 * 69.21622 * 16 15 14 18 18 C 1.50696 * 109.47372 * 179.97438 * 17 16 15 19 19 H 1.07996 * 120.00011 * 359.97438 * 18 17 16 20 20 C 1.37874 * 120.00082 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00317 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00041 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46779 * 89.99976 * 22 20 18 24 24 H 1.48495 * 109.47197 * 209.99915 * 22 20 18 25 25 H 1.48494 * 109.46890 * 330.00324 * 22 20 18 26 26 C 1.47765 * 108.52269 * 23.86646 * 15 14 13 27 27 C 1.34827 * 124.37830 * 59.99935 * 9 6 4 28 28 O 1.21280 * 125.18259 * 1.14628 * 27 9 6 29 29 H 1.08997 * 109.47269 * 59.99359 * 1 2 3 30 30 H 1.08993 * 109.47202 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46817 * 300.00068 * 1 2 3 32 32 H 1.09002 * 109.47220 * 240.00274 * 2 1 3 33 33 H 1.08997 * 109.47653 * 120.00262 * 2 1 3 34 34 H 1.09005 * 109.46783 * 60.00215 * 8 6 4 35 35 H 1.09004 * 109.47409 * 179.97438 * 8 6 4 36 36 H 1.08993 * 109.47005 * 299.99953 * 8 6 4 37 37 H 1.08996 * 110.23688 * 44.19829 * 10 9 6 38 38 H 1.09001 * 110.23321 * 282.23591 * 10 9 6 39 39 H 1.09000 * 111.02950 * 266.27197 * 11 10 9 40 40 H 1.08996 * 111.03614 * 142.35520 * 11 10 9 41 41 H 1.09000 * 110.98885 * 36.72728 * 13 12 11 42 42 H 1.08999 * 111.05911 * 272.87546 * 13 12 11 43 43 H 1.08997 * 110.34622 * 205.35004 * 14 13 12 44 44 H 1.09001 * 110.43371 * 83.12386 * 14 13 12 45 45 H 1.09000 * 109.47021 * 189.21262 * 16 15 14 46 46 H 1.08992 * 109.47498 * 309.21774 * 16 15 14 47 47 H 1.09006 * 109.47025 * 300.00140 * 17 16 15 48 48 H 1.09001 * 109.47361 * 59.99574 * 17 16 15 49 49 H 0.96999 * 120.00770 * 180.02562 * 21 20 18 50 50 H 1.09002 * 109.97972 * 117.49911 * 26 15 14 51 51 H 1.09000 * 109.97900 * 238.74790 * 26 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9208 2.9373 0.0000 7 1 3.5852 3.4691 0.8904 8 6 3.4487 3.6850 -1.2486 9 7 5.3838 2.8607 -0.0014 10 6 6.2448 3.4219 1.0484 11 6 7.6232 2.7443 0.8601 12 6 7.5713 2.3557 -0.6227 13 6 8.3017 3.3926 -1.4951 14 6 8.6982 2.5375 -2.7273 15 7 9.0177 1.2015 -2.1776 16 6 8.6370 0.1401 -3.1191 17 6 9.5594 0.1855 -4.3390 18 6 9.1694 -0.9037 -5.3046 19 1 8.3462 -1.5628 -5.0714 20 6 9.8634 -1.0588 -6.4858 21 7 10.8661 -0.2566 -6.7696 22 14 9.3803 -2.4095 -7.6825 23 1 8.3674 -1.8879 -8.6350 24 1 10.5805 -2.8585 -8.4329 25 1 8.8090 -3.5556 -6.9308 26 6 8.3129 1.0435 -0.8885 27 6 6.1141 2.2659 -0.9661 28 8 5.6616 1.7386 -1.9601 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.3601 3.7421 -1.2481 35 1 3.8649 4.6924 -1.2481 36 1 3.7842 3.1534 -2.1390 37 1 5.8406 3.1871 2.0330 38 1 6.3352 4.5011 0.9248 39 1 7.7147 1.8614 1.4928 40 1 8.4341 3.4468 1.0522 41 1 9.1851 3.7781 -0.9862 42 1 7.6329 4.2043 -1.7815 43 1 9.5726 2.9639 -3.2190 44 1 7.8656 2.4700 -3.4275 45 1 8.7291 -0.8297 -2.6300 46 1 7.6056 0.2898 -3.4378 47 1 9.4674 1.1553 -4.8281 48 1 10.5910 0.0358 -4.0203 49 1 11.3542 -0.3655 -7.6008 50 1 7.6017 0.2199 -0.9513 51 1 9.0321 0.8542 -0.0916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038743.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:52 Heat of formation + Delta-G solvation = -137.623334 kcal Electronic energy + Delta-G solvation = -31103.314707 eV Core-core repulsion = 27001.696131 eV Total energy + Delta-G solvation = -4101.618576 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.52072 -41.43338 -39.21442 -37.79999 -37.50999 -35.94967 -34.89595 -33.13760 -32.43444 -30.59214 -30.46288 -28.88969 -26.75401 -26.23859 -24.81481 -23.92546 -23.41156 -22.83779 -21.76744 -21.47426 -20.00938 -18.76059 -18.61864 -18.15283 -17.80472 -17.20655 -16.88332 -16.69959 -16.31752 -16.07929 -15.78045 -15.56017 -15.19100 -14.89475 -14.70959 -14.59699 -14.35164 -14.16467 -13.86939 -13.73493 -13.69284 -13.46403 -13.36496 -13.13227 -13.03563 -12.96698 -12.88803 -12.84956 -12.67807 -12.57615 -12.46853 -12.40210 -12.03516 -11.80652 -11.64337 -11.62882 -11.57447 -11.39775 -11.23382 -10.62438 -10.60511 -9.87375 -9.31065 -8.25220 -6.37163 1.02137 1.18640 1.33422 1.36381 1.47830 1.67096 1.97833 2.35824 3.05661 3.06714 3.23174 3.40601 3.50283 3.54707 3.79898 3.87958 3.89661 3.92690 3.99915 4.06277 4.24135 4.26848 4.33689 4.42390 4.46543 4.50881 4.60605 4.62032 4.67588 4.72115 4.76939 4.83359 4.85457 4.86427 4.94289 4.98796 5.06287 5.08029 5.11869 5.15200 5.21226 5.35049 5.36829 5.48579 5.58557 5.70878 5.97407 6.00619 6.10359 6.26229 6.58566 6.77331 7.13305 7.31147 8.87123 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010991 B = 0.003137 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.822750 B = 8923.069292 C =10745.053672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.353 6.353 4 C 0.441 3.559 5 O -0.533 6.533 6 C 0.169 3.831 7 H 0.180 0.820 8 C -0.157 4.157 9 N -0.614 5.614 10 C 0.103 3.897 11 C -0.108 4.108 12 C -0.116 4.116 13 C -0.084 4.084 14 C 0.041 3.959 15 N -0.529 5.529 16 C 0.082 3.918 17 C 0.046 3.954 18 C -0.552 4.552 19 H 0.048 0.952 20 C 0.005 3.995 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.267 1.267 26 C 0.065 3.935 27 C 0.528 3.472 28 O -0.561 6.561 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.080 0.920 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.031 0.969 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.074 0.926 44 H 0.013 0.987 45 H 0.050 0.950 46 H 0.001 0.999 47 H -0.009 1.009 48 H -0.001 1.001 49 H 0.266 0.734 50 H 0.021 0.979 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.199 14.096 24.513 33.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.020 4.020 3 O -0.269 6.269 4 C 0.283 3.717 5 O -0.421 6.421 6 C 0.065 3.935 7 H 0.197 0.803 8 C -0.214 4.214 9 N -0.349 5.349 10 C -0.018 4.018 11 C -0.146 4.146 12 C -0.121 4.121 13 C -0.122 4.122 14 C -0.087 4.087 15 N -0.253 5.253 16 C -0.046 4.046 17 C 0.008 3.992 18 C -0.590 4.590 19 H 0.067 0.933 20 C -0.194 4.194 21 N -0.567 5.567 22 Si 0.791 3.209 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.191 1.191 26 C -0.063 4.063 27 C 0.317 3.683 28 O -0.438 6.438 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.050 0.950 37 H 0.124 0.876 38 H 0.130 0.870 39 H 0.106 0.894 40 H 0.150 0.850 41 H 0.141 0.859 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.019 0.981 47 H 0.009 0.991 48 H 0.017 0.983 49 H 0.075 0.925 50 H 0.040 0.960 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.665 13.485 23.955 32.676 hybrid contribution -0.921 -1.587 -1.595 2.432 sum -18.587 11.897 22.359 31.416 Atomic orbital electron populations 1.21802 0.89567 1.04376 1.04119 1.23234 0.97556 0.79453 1.01712 1.86465 1.23414 1.33283 1.83763 1.24878 0.81102 0.94025 0.71691 1.90713 1.61335 1.44407 1.45620 1.20737 0.79376 0.88310 1.05120 0.80350 1.22103 1.03669 1.01005 0.94669 1.48449 1.04544 1.57174 1.24729 1.22615 0.88718 0.99701 0.90724 1.22650 0.98747 1.02919 0.90250 1.21785 0.91754 0.97912 1.00602 1.22555 1.00870 0.95397 0.93379 1.23088 0.98732 0.89369 0.97506 1.63835 1.55383 1.02505 1.03564 1.22054 0.95644 0.93392 0.93549 1.18809 0.94042 0.95064 0.91276 1.21572 1.16266 1.16430 1.04765 0.93345 1.25951 0.94678 0.98912 0.99811 1.70092 1.21642 1.39637 1.25307 0.85422 0.78127 0.78904 0.78431 1.19728 1.19641 1.19150 1.22686 0.95521 0.95056 0.93015 1.20778 0.89786 0.75813 0.81927 1.90719 1.78074 1.45020 1.30021 0.91369 0.88572 0.90090 0.93476 0.91238 0.88195 0.88217 0.94965 0.87591 0.87004 0.89439 0.84979 0.85920 0.89503 0.90746 0.96864 0.93153 0.98061 0.99113 0.98255 0.92472 0.96021 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 10.29 71.98 0.74 -0.94 16 2 C 0.05 1.08 6.19 71.98 0.45 1.53 16 3 O -0.35 -7.69 10.12 -51.43 -0.52 -8.21 16 4 C 0.44 11.39 6.97 71.23 0.50 11.88 16 5 O -0.53 -18.99 14.68 26.89 0.39 -18.60 16 6 C 0.17 2.93 3.39 44.24 0.15 3.08 16 7 H 0.18 1.15 8.07 -2.38 -0.02 1.13 16 8 C -0.16 -2.71 9.13 71.98 0.66 -2.05 16 9 N -0.61 -12.45 2.64 -798.42 -2.10 -14.55 16 10 C 0.10 0.97 7.32 86.90 0.64 1.61 16 11 C -0.11 -1.40 6.15 31.32 0.19 -1.21 16 12 C -0.12 -2.98 0.66 -52.69 -0.03 -3.01 16 13 C -0.08 -2.05 6.03 31.64 0.19 -1.86 16 14 C 0.04 1.57 5.73 86.83 0.50 2.07 16 15 N -0.53 -22.44 5.18 -886.48 -4.59 -27.03 16 16 C 0.08 4.29 4.51 86.30 0.39 4.68 16 17 C 0.05 2.76 5.02 29.85 0.15 2.91 16 18 C -0.55 -35.39 9.11 25.60 0.23 -35.16 16 19 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 20 C 0.00 0.30 5.46 84.65 0.46 0.76 16 21 N -0.93 -59.83 13.29 21.45 0.28 -59.55 16 22 Si 0.97 47.89 29.54 68.60 2.03 49.92 16 23 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 26 C 0.07 2.24 5.94 86.15 0.51 2.75 16 27 C 0.53 16.53 5.25 87.43 0.46 16.99 16 28 O -0.56 -24.55 15.32 10.09 0.15 -24.39 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 33 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 34 H 0.10 1.31 8.11 -2.38 -0.02 1.29 16 35 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.03 0.88 6.77 -2.39 -0.02 0.86 16 37 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.09 1.15 7.90 -2.39 -0.02 1.13 16 40 H 0.13 0.84 7.63 -2.39 -0.02 0.82 16 41 H 0.12 2.16 7.76 -2.39 -0.02 2.14 16 42 H 0.09 1.87 8.00 -2.39 -0.02 1.85 16 43 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.01 0.59 7.62 -2.39 -0.02 0.58 16 45 H 0.05 2.63 8.04 -2.39 -0.02 2.61 16 46 H 0.00 0.06 7.85 -2.39 -0.02 0.04 16 47 H -0.01 -0.61 7.49 -2.38 -0.02 -0.63 16 48 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 49 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 50 H 0.02 0.88 7.24 -2.39 -0.02 0.86 16 51 H 0.11 3.04 7.79 -2.39 -0.02 3.02 16 Total: -1.00 -93.99 406.96 2.72 -91.27 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.89 Total: 7.11 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.18 Total: 4.03 kcal Atomic # 7 Polarization: -94.72 SS G_CDS: -6.41 Total: -101.13 kcal Atomic # 8 Polarization: -51.22 SS G_CDS: 0.03 Total: -51.19 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 2.03 Total: 49.92 kcal Total: -93.99 2.72 -91.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038743.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.354 kcal (2) G-P(sol) polarization free energy of solvation -93.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds