Wall clock time and date at job start Tue Mar 31 2020 20:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46924 * 2 1 4 4 C 1.34230 * 116.99344 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00508 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99426 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46984 * 299.99908 * 6 4 3 8 8 C 1.52998 * 109.47396 * 60.00138 * 6 4 3 9 9 N 1.46499 * 109.47059 * 180.02562 * 6 4 3 10 10 C 1.46852 * 124.37322 * 119.99941 * 9 6 4 11 11 C 1.54643 * 105.57882 * 196.89021 * 10 9 6 12 12 C 1.53868 * 101.58525 * 335.19929 * 11 10 9 13 13 C 1.53246 * 110.59065 * 144.20284 * 12 11 10 14 14 C 1.54803 * 104.81018 * 122.08960 * 13 12 11 15 15 C 1.54996 * 102.93741 * 21.92722 * 14 13 12 16 16 N 1.47077 * 110.69070 * 263.77775 * 12 11 10 17 17 C 1.46901 * 111.00046 * 93.79409 * 16 12 11 18 18 C 1.53005 * 109.46936 * 189.99929 * 17 16 12 19 19 C 1.50703 * 109.46497 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00304 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99384 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99684 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00479 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47231 * 89.99994 * 23 21 19 25 25 H 1.48498 * 109.47457 * 210.00251 * 23 21 19 26 26 H 1.48503 * 109.46730 * 330.00133 * 23 21 19 27 27 C 1.34875 * 124.48280 * 299.97218 * 9 6 4 28 28 O 1.21278 * 125.04627 * 359.17566 * 27 9 6 29 29 H 1.09008 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46943 * 299.99317 * 1 2 3 31 31 H 1.08995 * 109.47343 * 59.99799 * 1 2 3 32 32 H 1.09005 * 109.46398 * 240.00149 * 2 1 3 33 33 H 1.08999 * 109.47234 * 120.00714 * 2 1 3 34 34 H 1.08994 * 109.47033 * 300.00044 * 8 6 4 35 35 H 1.09002 * 109.47242 * 59.99928 * 8 6 4 36 36 H 1.08998 * 109.47185 * 179.97438 * 8 6 4 37 37 H 1.09002 * 110.24118 * 77.83869 * 10 9 6 38 38 H 1.08998 * 110.23629 * 315.94028 * 10 9 6 39 39 H 1.09003 * 111.00580 * 93.27584 * 11 10 9 40 40 H 1.09000 * 111.00807 * 217.08122 * 11 10 9 41 41 H 1.08998 * 110.37472 * 240.92499 * 13 12 11 42 42 H 1.09002 * 110.37103 * 3.25919 * 13 12 11 43 43 H 1.09004 * 110.71758 * 263.56240 * 14 13 12 44 44 H 1.08998 * 110.87170 * 140.36432 * 14 13 12 45 45 H 1.09000 * 110.63998 * 204.56910 * 15 14 13 46 46 H 1.09002 * 110.64095 * 81.51111 * 15 14 13 47 47 H 1.08998 * 109.46932 * 309.99923 * 17 16 12 48 48 H 1.08994 * 109.46834 * 69.99973 * 17 16 12 49 49 H 1.09000 * 109.46797 * 299.99858 * 18 17 16 50 50 H 1.08995 * 109.46583 * 60.00393 * 18 17 16 51 51 H 0.97001 * 119.99856 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5843 3.4700 -0.8895 8 6 3.4498 3.6836 1.2499 9 7 5.3837 2.8607 -0.0014 10 6 6.2424 3.4233 -1.0514 11 6 7.6199 2.7444 -0.8695 12 6 7.5808 2.3602 0.6200 13 6 8.2923 1.0227 0.8504 14 6 9.4092 1.3399 1.8742 15 6 8.8992 2.6362 2.5538 16 7 8.2563 3.3794 1.4374 17 6 7.2958 4.3672 1.9468 18 6 8.0536 5.5381 2.5759 19 6 7.0681 6.5512 3.0990 20 1 6.0075 6.3771 2.9937 21 6 7.5207 7.7002 3.7120 22 7 6.6607 8.5841 4.1690 23 14 9.3552 8.0010 3.8947 24 1 9.8574 8.7347 2.7054 25 1 9.6054 8.8078 5.1160 26 1 10.0613 6.6995 4.0080 27 6 6.1181 2.2653 0.9606 28 8 5.6664 1.7323 1.9520 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3614 3.7406 1.2505 35 1 3.7862 3.1509 2.1394 36 1 3.8668 4.6906 1.2505 37 1 6.3342 4.5021 -0.9257 38 1 5.8351 3.1921 -2.0356 39 1 7.7053 1.8588 -1.4993 40 1 8.4304 3.4445 -1.0719 41 1 7.5982 0.2894 1.2611 42 1 8.7242 0.6572 -0.0812 43 1 10.3578 1.5175 1.3674 44 1 9.5079 0.5354 2.6031 45 1 9.7313 3.2067 2.9663 46 1 8.1703 2.4021 3.3297 47 1 6.6800 4.7325 1.1250 48 1 6.6591 3.9007 2.6984 49 1 8.6694 5.1727 3.3977 50 1 8.6903 6.0045 1.8241 51 1 6.9791 9.3924 4.6006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:46 Heat of formation + Delta-G solvation = -105.718185 kcal Electronic energy + Delta-G solvation = -32021.131818 eV Core-core repulsion = 27920.896753 eV Total energy + Delta-G solvation = -4100.235065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.48621 -40.36154 -37.72033 -36.58969 -36.16121 -34.01847 -33.40277 -32.01377 -31.81184 -29.52453 -29.03983 -27.71746 -25.29898 -24.64552 -23.73564 -23.03376 -21.84255 -21.49092 -20.40447 -19.99707 -18.72142 -17.65430 -17.18541 -16.87784 -16.70043 -16.14716 -15.74640 -15.32318 -14.88765 -14.61450 -14.39084 -14.12313 -14.02387 -13.72512 -13.54372 -13.34891 -13.05233 -12.85904 -12.66920 -12.58291 -12.42202 -12.37485 -12.17279 -11.94062 -11.90876 -11.86349 -11.69651 -11.51964 -11.25346 -11.04436 -10.87004 -10.76217 -10.70484 -10.57945 -10.39783 -10.12190 -9.79343 -9.70767 -9.64118 -9.20849 -8.76407 -8.52559 -8.01136 -6.03887 -4.01962 2.11795 2.24002 2.81583 3.07028 3.32682 3.39953 3.45186 4.19254 4.40069 4.46718 4.47056 4.54098 4.67230 4.73381 4.75182 4.86277 4.92947 4.94771 5.01899 5.15076 5.28030 5.30448 5.31439 5.38728 5.46782 5.50953 5.65526 5.69386 5.73323 5.78727 5.85225 5.87744 5.96717 5.99768 6.04710 6.12152 6.23667 6.25279 6.31784 6.33966 6.38134 6.50870 6.74725 7.08387 7.10772 7.14615 7.46106 7.53359 7.66879 7.82544 8.33208 8.53235 8.99640 9.58580 11.09392 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.003772 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.233299 B = 7421.545578 C = 8846.808642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.062 3.938 3 O -0.357 6.357 4 C 0.452 3.548 5 O -0.489 6.489 6 C 0.172 3.828 7 H 0.125 0.875 8 C -0.165 4.165 9 N -0.613 5.613 10 C 0.102 3.898 11 C -0.114 4.114 12 C 0.063 3.937 13 C -0.109 4.109 14 C -0.120 4.120 15 C 0.034 3.966 16 N -0.486 5.486 17 C 0.051 3.949 18 C -0.001 4.001 19 C -0.519 4.519 20 H 0.069 0.931 21 C 0.068 3.932 22 N -0.903 5.903 23 Si 0.881 3.119 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.265 1.265 27 C 0.527 3.473 28 O -0.513 6.513 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.036 0.964 49 H 0.015 0.985 50 H 0.020 0.980 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -15.978 -13.596 21.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.292 3.708 5 O -0.375 6.375 6 C 0.067 3.933 7 H 0.143 0.857 8 C -0.223 4.223 9 N -0.350 5.350 10 C -0.020 4.020 11 C -0.152 4.152 12 C -0.031 4.031 13 C -0.147 4.147 14 C -0.158 4.158 15 C -0.094 4.094 16 N -0.211 5.211 17 C -0.076 4.076 18 C -0.039 4.039 19 C -0.558 4.558 20 H 0.088 0.912 21 C -0.133 4.133 22 N -0.542 5.542 23 Si 0.708 3.292 24 H -0.202 1.202 25 H -0.215 1.215 26 H -0.189 1.189 27 C 0.313 3.687 28 O -0.386 6.386 29 H 0.097 0.903 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.123 0.877 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.055 0.945 49 H 0.033 0.967 50 H 0.039 0.961 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.830 -16.124 -13.261 21.428 hybrid contribution 0.132 -0.206 0.585 0.634 sum -4.698 -16.330 -12.676 21.199 Atomic orbital electron populations 1.21804 0.92543 1.02902 1.03608 1.23004 0.95320 0.80309 1.02519 1.86487 1.24288 1.32344 1.84277 1.24144 0.80780 0.93150 0.72757 1.90666 1.60306 1.42682 1.43816 1.20348 0.80230 0.89590 1.03153 0.85712 1.22160 1.02210 1.01587 0.96307 1.48248 1.03652 1.57969 1.25087 1.22262 0.90312 0.99069 0.90363 1.22639 0.96928 1.01664 0.93998 1.22055 0.90217 0.94608 0.96205 1.22278 0.97552 0.94744 1.00172 1.22521 0.98204 0.97292 0.97794 1.23336 0.99169 0.93546 0.93318 1.65056 1.27333 1.10093 1.18589 1.22497 0.93622 0.93122 0.98367 1.19483 0.96299 0.92706 0.95427 1.21035 0.94268 1.02810 1.37640 0.91250 1.24977 0.97650 0.95787 0.94871 1.69915 1.34104 1.10361 1.39853 0.86761 0.86228 0.78602 0.77613 1.20243 1.21528 1.18932 1.21180 0.89547 0.75893 0.82037 1.90667 1.77214 1.43309 1.27361 0.90313 0.91318 0.91474 0.91451 0.91253 0.90198 0.90503 0.89680 0.89913 0.90597 0.90006 0.87714 0.90736 0.90530 0.90753 0.91164 0.89552 0.93027 0.91288 0.94528 0.96665 0.96144 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.29 37.16 0.38 -0.68 16 2 C 0.06 0.63 6.19 37.16 0.23 0.86 16 3 O -0.36 -4.45 10.12 -39.26 -0.40 -4.84 16 4 C 0.45 6.53 6.97 36.01 0.25 6.78 16 5 O -0.49 -8.50 14.67 -23.93 -0.35 -8.85 16 6 C 0.17 2.26 3.39 -69.08 -0.23 2.03 16 7 H 0.13 1.18 8.07 -51.93 -0.42 0.76 16 8 C -0.16 -2.33 9.13 37.16 0.34 -1.99 16 9 N -0.61 -8.97 2.32 -166.19 -0.39 -9.35 16 10 C 0.10 1.18 6.56 -2.99 -0.02 1.16 16 11 C -0.11 -1.35 6.33 -25.42 -0.16 -1.51 16 12 C 0.06 0.96 0.79 -132.18 -0.11 0.86 16 13 C -0.11 -1.50 6.18 -25.65 -0.16 -1.66 16 14 C -0.12 -1.58 7.08 -24.73 -0.17 -1.76 16 15 C 0.03 0.57 5.92 -1.76 -0.01 0.56 16 16 N -0.49 -8.53 4.87 -216.78 -1.06 -9.59 16 17 C 0.05 1.06 3.72 -3.82 -0.01 1.05 16 18 C 0.00 -0.03 4.14 -27.88 -0.12 -0.15 16 19 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 20 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 21 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -27.82 13.96 55.43 0.77 -27.04 16 23 Si 0.88 21.89 27.47 -169.99 -4.67 17.22 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 27 C 0.53 9.23 3.39 -11.05 -0.04 9.19 16 28 O -0.51 -10.77 14.62 -8.37 -0.12 -10.89 16 29 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 34 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 35 H 0.08 1.34 6.79 -51.93 -0.35 0.98 16 36 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 0.98 7.38 -51.93 -0.38 0.60 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.08 0.81 7.57 -51.93 -0.39 0.42 16 40 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.07 1.15 7.44 -51.93 -0.39 0.77 16 42 H 0.08 0.86 7.40 -51.93 -0.38 0.48 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 1.43 7.85 -51.93 -0.41 1.03 16 46 H 0.05 0.96 7.79 -51.93 -0.40 0.56 16 47 H 0.07 1.40 5.83 -51.93 -0.30 1.10 16 48 H 0.04 0.85 6.84 -51.93 -0.36 0.50 16 49 H 0.02 0.37 6.47 -51.93 -0.34 0.04 16 50 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 51 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 396.73 15.07 5.98 5.98 Total: -1.00 -35.56 396.73 -9.23 -44.79 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -8.75 Total: 1.08 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.26 Total: 1.50 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: -0.67 Total: -45.98 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.87 Total: -24.59 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -4.67 Total: 17.22 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.56 -9.23 -44.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.923 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds