Wall clock time and date at job start Tue Mar 31 2020 20:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46924 * 2 1 4 4 C 1.34230 * 116.99344 * 180.02562 * 3 2 1 5 5 O 1.20820 * 120.00508 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99426 * 180.02562 * 4 3 2 7 7 H 1.09002 * 109.46984 * 299.99908 * 6 4 3 8 8 C 1.52998 * 109.47396 * 60.00138 * 6 4 3 9 9 N 1.46499 * 109.47059 * 180.02562 * 6 4 3 10 10 C 1.46852 * 124.37322 * 119.99941 * 9 6 4 11 11 C 1.54643 * 105.57882 * 196.89021 * 10 9 6 12 12 C 1.53868 * 101.58525 * 335.19929 * 11 10 9 13 13 C 1.53246 * 110.59065 * 144.20284 * 12 11 10 14 14 C 1.54803 * 104.81018 * 122.08960 * 13 12 11 15 15 C 1.54996 * 102.93741 * 21.92722 * 14 13 12 16 16 N 1.47077 * 110.69070 * 263.77775 * 12 11 10 17 17 C 1.46901 * 111.00046 * 93.79409 * 16 12 11 18 18 C 1.53005 * 109.46936 * 189.99929 * 17 16 12 19 19 C 1.50703 * 109.46497 * 180.02562 * 18 17 16 20 20 H 1.07994 * 120.00304 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99384 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99684 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00479 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47231 * 89.99994 * 23 21 19 25 25 H 1.48498 * 109.47457 * 210.00251 * 23 21 19 26 26 H 1.48503 * 109.46730 * 330.00133 * 23 21 19 27 27 C 1.34875 * 124.48280 * 299.97218 * 9 6 4 28 28 O 1.21278 * 125.04627 * 359.17566 * 27 9 6 29 29 H 1.09008 * 109.47196 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46943 * 299.99317 * 1 2 3 31 31 H 1.08995 * 109.47343 * 59.99799 * 1 2 3 32 32 H 1.09005 * 109.46398 * 240.00149 * 2 1 3 33 33 H 1.08999 * 109.47234 * 120.00714 * 2 1 3 34 34 H 1.08994 * 109.47033 * 300.00044 * 8 6 4 35 35 H 1.09002 * 109.47242 * 59.99928 * 8 6 4 36 36 H 1.08998 * 109.47185 * 179.97438 * 8 6 4 37 37 H 1.09002 * 110.24118 * 77.83869 * 10 9 6 38 38 H 1.08998 * 110.23629 * 315.94028 * 10 9 6 39 39 H 1.09003 * 111.00580 * 93.27584 * 11 10 9 40 40 H 1.09000 * 111.00807 * 217.08122 * 11 10 9 41 41 H 1.08998 * 110.37472 * 240.92499 * 13 12 11 42 42 H 1.09002 * 110.37103 * 3.25919 * 13 12 11 43 43 H 1.09004 * 110.71758 * 263.56240 * 14 13 12 44 44 H 1.08998 * 110.87170 * 140.36432 * 14 13 12 45 45 H 1.09000 * 110.63998 * 204.56910 * 15 14 13 46 46 H 1.09002 * 110.64095 * 81.51111 * 15 14 13 47 47 H 1.08998 * 109.46932 * 309.99923 * 17 16 12 48 48 H 1.08994 * 109.46834 * 69.99973 * 17 16 12 49 49 H 1.09000 * 109.46797 * 299.99858 * 18 17 16 50 50 H 1.08995 * 109.46583 * 60.00393 * 18 17 16 51 51 H 0.97001 * 119.99856 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9373 0.0000 7 1 3.5843 3.4700 -0.8895 8 6 3.4498 3.6836 1.2499 9 7 5.3837 2.8607 -0.0014 10 6 6.2424 3.4233 -1.0514 11 6 7.6199 2.7444 -0.8695 12 6 7.5808 2.3602 0.6200 13 6 8.2923 1.0227 0.8504 14 6 9.4092 1.3399 1.8742 15 6 8.8992 2.6362 2.5538 16 7 8.2563 3.3794 1.4374 17 6 7.2958 4.3672 1.9468 18 6 8.0536 5.5381 2.5759 19 6 7.0681 6.5512 3.0990 20 1 6.0075 6.3771 2.9937 21 6 7.5207 7.7002 3.7120 22 7 6.6607 8.5841 4.1690 23 14 9.3552 8.0010 3.8947 24 1 9.8574 8.7347 2.7054 25 1 9.6054 8.8078 5.1160 26 1 10.0613 6.6995 4.0080 27 6 6.1181 2.2653 0.9606 28 8 5.6664 1.7323 1.9520 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3614 3.7406 1.2505 35 1 3.7862 3.1509 2.1394 36 1 3.8668 4.6906 1.2505 37 1 6.3342 4.5021 -0.9257 38 1 5.8351 3.1921 -2.0356 39 1 7.7053 1.8588 -1.4993 40 1 8.4304 3.4445 -1.0719 41 1 7.5982 0.2894 1.2611 42 1 8.7242 0.6572 -0.0812 43 1 10.3578 1.5175 1.3674 44 1 9.5079 0.5354 2.6031 45 1 9.7313 3.2067 2.9663 46 1 8.1703 2.4021 3.3297 47 1 6.6800 4.7325 1.1250 48 1 6.6591 3.9007 2.6984 49 1 8.6694 5.1727 3.3977 50 1 8.6903 6.0045 1.8241 51 1 6.9791 9.3924 4.6006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038858.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:45 Heat of formation + Delta-G solvation = -129.419128 kcal Electronic energy + Delta-G solvation = -32022.159568 eV Core-core repulsion = 27920.896753 eV Total energy + Delta-G solvation = -4101.262815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.68902 -41.48821 -38.96153 -37.79258 -37.37158 -35.79155 -34.66012 -33.86507 -32.58819 -30.83510 -30.63558 -28.82901 -26.43105 -26.39038 -24.92048 -24.04843 -23.00136 -22.78897 -21.66431 -21.51017 -19.98719 -19.06825 -18.71284 -18.21905 -17.82823 -17.39995 -16.90509 -16.62426 -16.30436 -16.07300 -15.72235 -15.60922 -15.17116 -14.98185 -14.81158 -14.65192 -14.54898 -14.01682 -13.86385 -13.73569 -13.59887 -13.53498 -13.50181 -13.27247 -13.12225 -12.98574 -12.89839 -12.75958 -12.56361 -12.34791 -12.26257 -12.06251 -11.87451 -11.75852 -11.66373 -11.61234 -11.53736 -11.46690 -11.34347 -11.02805 -10.76468 -9.91855 -9.47581 -8.30330 -6.35036 0.99361 1.17624 1.36391 1.38583 1.51066 1.57861 1.99375 2.36286 2.88943 3.05118 3.26928 3.39066 3.53266 3.64747 3.78367 3.84514 3.89393 3.93165 4.01711 4.06739 4.18616 4.24890 4.25984 4.35462 4.41955 4.49178 4.54310 4.57626 4.66536 4.71665 4.76794 4.85716 4.87168 4.88567 4.92804 5.01059 5.04741 5.08509 5.11827 5.14005 5.21480 5.26141 5.34489 5.39953 5.44650 5.57639 5.86371 5.92705 5.96745 6.25829 6.57094 6.70845 7.06802 7.29452 8.86300 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012473 B = 0.003772 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2244.233299 B = 7421.545578 C = 8846.808642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 O -0.355 6.355 4 C 0.454 3.546 5 O -0.522 6.522 6 C 0.166 3.834 7 H 0.171 0.829 8 C -0.156 4.156 9 N -0.614 5.614 10 C 0.094 3.906 11 C -0.105 4.105 12 C 0.052 3.948 13 C -0.106 4.106 14 C -0.107 4.107 15 C 0.025 3.975 16 N -0.478 5.478 17 C 0.073 3.927 18 C 0.008 3.992 19 C -0.531 4.531 20 H 0.027 0.973 21 C 0.009 3.991 22 N -0.949 5.949 23 Si 0.952 3.048 24 H -0.259 1.259 25 H -0.285 1.285 26 H -0.250 1.250 27 C 0.513 3.487 28 O -0.563 6.563 29 H 0.100 0.900 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.035 0.965 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.116 0.884 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.049 0.951 42 H 0.112 0.888 43 H 0.101 0.899 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.018 0.982 47 H 0.071 0.929 48 H -0.002 1.002 49 H 0.011 0.989 50 H 0.032 0.968 51 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.306 -16.585 -16.602 23.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 O -0.271 6.271 4 C 0.295 3.705 5 O -0.410 6.410 6 C 0.062 3.938 7 H 0.188 0.812 8 C -0.214 4.214 9 N -0.349 5.349 10 C -0.027 4.027 11 C -0.143 4.143 12 C -0.041 4.041 13 C -0.145 4.145 14 C -0.145 4.145 15 C -0.103 4.103 16 N -0.203 5.203 17 C -0.055 4.055 18 C -0.030 4.030 19 C -0.570 4.570 20 H 0.045 0.955 21 C -0.188 4.188 22 N -0.589 5.589 23 Si 0.775 3.225 24 H -0.184 1.184 25 H -0.211 1.211 26 H -0.174 1.174 27 C 0.300 3.700 28 O -0.440 6.440 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.134 0.866 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.099 0.901 45 H 0.106 0.894 46 H 0.037 0.963 47 H 0.090 0.910 48 H 0.016 0.984 49 H 0.030 0.970 50 H 0.050 0.950 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.084 -16.726 -16.317 23.569 hybrid contribution -0.597 -0.043 1.559 1.670 sum -3.681 -16.769 -14.758 22.639 Atomic orbital electron populations 1.21823 0.89857 1.04479 1.03915 1.23287 0.97378 0.79123 1.02124 1.86488 1.23155 1.33811 1.83696 1.24328 0.81196 0.93139 0.71805 1.90647 1.61137 1.43732 1.45525 1.20608 0.79732 0.89363 1.04123 0.81176 1.22043 1.03651 1.00273 0.95451 1.48439 1.04488 1.56829 1.25117 1.22568 0.90121 0.98782 0.91186 1.22726 0.97271 1.03119 0.91167 1.22337 0.88830 0.94892 0.98066 1.22315 0.97055 0.93265 1.01827 1.22512 0.98902 0.95366 0.97737 1.23425 0.98350 0.95628 0.92896 1.65064 1.26126 1.10565 1.18500 1.22063 0.93328 0.92865 0.97215 1.19336 0.95443 0.92741 0.95500 1.21301 0.93309 1.04252 1.38095 0.95468 1.25951 1.03244 0.95323 0.94282 1.70064 1.36763 1.11144 1.40929 0.85636 0.79487 0.79189 0.78222 1.18390 1.21130 1.17414 1.21678 0.90937 0.75561 0.81783 1.90629 1.78268 1.45626 1.29447 0.88100 0.91649 0.90460 0.90802 0.92791 0.87793 0.94624 0.90939 0.90198 0.86604 0.87189 0.86522 0.93188 0.86971 0.88033 0.90068 0.89386 0.96305 0.91034 0.98365 0.97050 0.94963 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 10.29 71.98 0.74 -1.08 16 2 C 0.05 1.08 6.19 71.98 0.45 1.53 16 3 O -0.36 -8.70 10.12 -51.42 -0.52 -9.22 16 4 C 0.45 13.12 6.97 71.24 0.50 13.62 16 5 O -0.52 -18.43 14.67 26.94 0.40 -18.04 16 6 C 0.17 4.31 3.39 44.25 0.15 4.46 16 7 H 0.17 2.78 8.07 -2.39 -0.02 2.76 16 8 C -0.16 -4.66 9.13 71.98 0.66 -4.01 16 9 N -0.61 -17.65 2.32 -798.05 -1.85 -19.50 16 10 C 0.09 1.93 6.56 86.87 0.57 2.50 16 11 C -0.11 -2.12 6.33 31.45 0.20 -1.92 16 12 C 0.05 1.54 0.79 3.06 0.00 1.54 16 13 C -0.11 -2.73 6.18 31.29 0.19 -2.54 16 14 C -0.11 -2.61 7.08 31.89 0.23 -2.39 16 15 C 0.02 0.83 5.92 86.63 0.51 1.34 16 16 N -0.48 -16.53 4.87 -839.76 -4.09 -20.62 16 17 C 0.07 3.15 3.72 86.30 0.32 3.48 16 18 C 0.01 0.37 4.14 29.85 0.12 0.49 16 19 C -0.53 -31.44 9.66 25.60 0.25 -31.19 16 20 H 0.03 1.78 7.99 -2.91 -0.02 1.75 16 21 C 0.01 0.54 5.47 84.65 0.46 1.00 16 22 N -0.95 -60.02 13.96 21.45 0.30 -59.72 16 23 Si 0.95 44.85 27.47 68.60 1.88 46.74 16 24 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 26 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 27 C 0.51 18.40 3.39 87.57 0.30 18.70 16 28 O -0.56 -25.34 14.62 10.29 0.15 -25.19 16 29 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.07 1.37 8.13 -2.38 -0.02 1.35 16 33 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.10 2.50 8.11 -2.39 -0.02 2.48 16 35 H 0.03 1.35 6.79 -2.39 -0.02 1.33 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.08 1.71 7.38 -2.39 -0.02 1.69 16 38 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.64 7.57 -2.39 -0.02 1.62 16 40 H 0.12 2.14 8.07 -2.39 -0.02 2.12 16 41 H 0.05 1.54 7.44 -2.39 -0.02 1.52 16 42 H 0.11 2.07 7.40 -2.39 -0.02 2.05 16 43 H 0.10 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.09 2.86 7.85 -2.39 -0.02 2.84 16 46 H 0.02 0.74 7.79 -2.39 -0.02 0.72 16 47 H 0.07 2.99 5.83 -2.39 -0.01 2.98 16 48 H 0.00 -0.10 6.84 -2.39 -0.02 -0.12 16 49 H 0.01 0.56 6.47 -2.39 -0.02 0.54 16 50 H 0.03 1.51 7.57 -2.39 -0.02 1.49 16 51 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 Total: -1.00 -83.26 396.73 2.76 -80.50 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.85 Total: 19.52 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: 5.65 Total: 5.53 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -5.64 Total: -99.84 kcal Atomic # 8 Polarization: -52.48 SS G_CDS: 0.03 Total: -52.45 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 1.88 Total: 46.74 kcal Total: -83.26 2.76 -80.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038858.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.918 kcal (2) G-P(sol) polarization free energy of solvation -83.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds