Wall clock time and date at job start Tue Mar 31 2020 20:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.46912 * 2 1 4 4 C 1.34235 * 116.99738 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00152 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99687 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47248 * 60.00211 * 6 4 3 8 8 C 1.52999 * 109.47331 * 299.99738 * 6 4 3 9 9 N 1.46506 * 109.46948 * 179.97438 * 6 4 3 10 10 C 1.35160 * 118.77870 * 60.05557 * 9 6 4 11 11 O 1.21282 * 118.14065 * 0.47350 * 10 9 6 12 12 C 1.50310 * 123.17934 * 180.73083 * 10 9 6 13 13 C 1.52919 * 109.41953 * 338.93071 * 12 10 9 14 14 C 1.53104 * 109.19198 * 52.12422 * 13 12 10 15 15 H 1.09006 * 112.34008 * 60.03166 * 14 13 12 16 16 C 1.44812 * 117.36431 * 239.99585 * 9 6 4 17 17 H 1.09002 * 110.00596 * 44.46467 * 16 9 6 18 18 C 1.54363 * 110.63490 * 282.67284 * 16 9 6 19 19 C 1.54264 * 104.82337 * 216.44009 * 18 16 9 20 20 N 1.48054 * 106.83610 * 358.54844 * 19 18 16 21 21 C 1.46895 * 111.00060 * 146.61159 * 20 19 18 22 22 C 1.53007 * 109.47039 * 184.18932 * 21 20 19 23 23 C 1.50701 * 109.47000 * 185.06430 * 22 21 20 24 24 H 1.07999 * 120.00068 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99777 * 180.02562 * 23 22 21 26 26 N 1.31516 * 119.99927 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00020 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47195 * 89.99618 * 27 25 23 29 29 H 1.48500 * 109.47225 * 209.99728 * 27 25 23 30 30 H 1.48501 * 109.46726 * 329.99950 * 27 25 23 31 31 H 1.09001 * 109.47024 * 299.99925 * 1 2 3 32 32 H 1.08996 * 109.47542 * 60.00032 * 1 2 3 33 33 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47024 * 240.00075 * 2 1 3 35 35 H 1.08996 * 109.47542 * 119.99968 * 2 1 3 36 36 H 1.09003 * 109.47072 * 60.00167 * 8 6 4 37 37 H 1.09005 * 109.47422 * 179.97438 * 8 6 4 38 38 H 1.09003 * 109.47008 * 299.99991 * 8 6 4 39 39 H 1.08998 * 109.47930 * 218.94266 * 12 10 9 40 40 H 1.08996 * 109.47537 * 98.91238 * 12 10 9 41 41 H 1.08998 * 109.51737 * 292.21076 * 13 12 10 42 42 H 1.08996 * 109.56605 * 172.06879 * 13 12 10 43 43 H 1.09002 * 110.36558 * 335.26859 * 18 16 9 44 44 H 1.08990 * 110.36873 * 97.60226 * 18 16 9 45 45 H 1.08998 * 109.98565 * 117.89228 * 19 18 16 46 46 H 1.08995 * 109.98844 * 239.20466 * 19 18 16 47 47 H 1.08997 * 109.47194 * 304.18806 * 21 20 19 48 48 H 1.09000 * 109.47385 * 64.19361 * 21 20 19 49 49 H 1.09001 * 109.47149 * 305.06970 * 22 21 20 50 50 H 1.09006 * 109.46963 * 65.06542 * 22 21 20 51 51 H 0.97002 * 120.00113 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 1 3.5850 3.4698 0.8888 8 6 3.4487 3.6840 -1.2505 9 7 5.3837 2.8608 -0.0010 10 6 6.0026 2.2357 -1.0272 11 8 5.3155 1.7710 -1.9120 12 6 7.4954 2.0859 -1.1191 13 6 8.1673 3.1408 -0.2393 14 6 7.5728 3.0738 1.1700 15 1 7.7200 2.0994 1.6359 16 6 6.0820 3.4687 1.1124 17 1 5.5898 3.2069 2.0491 18 6 6.1309 5.0031 0.9515 19 6 7.5122 5.4139 1.5020 20 7 8.1712 4.1751 1.9744 21 6 9.6249 4.2430 1.7746 22 6 10.2578 2.9092 2.1763 23 6 11.7583 3.0189 2.0900 24 1 12.2149 3.9473 1.7801 25 6 12.5482 1.9341 2.4067 26 7 11.9922 0.8038 2.7845 27 14 14.4082 2.0704 2.3004 28 1 14.9464 2.5290 3.6063 29 1 14.9835 0.7426 1.9666 30 1 14.7733 3.0479 1.2437 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.3601 3.7411 -1.2501 37 1 3.8649 4.6915 -1.2507 38 1 3.7844 3.1516 -2.1404 39 1 7.8112 2.2204 -2.1536 40 1 7.7825 1.0914 -0.7776 41 1 7.9939 4.1308 -0.6610 42 1 9.2390 2.9478 -0.1920 43 1 6.0449 5.2772 -0.1000 44 1 5.3364 5.4711 1.5326 45 1 8.1062 5.8740 0.7124 46 1 7.3906 6.1106 2.3313 47 1 9.8383 4.4450 0.7250 48 1 10.0393 5.0416 2.3899 49 1 9.9696 2.6634 3.1984 50 1 9.9115 2.1252 1.5027 51 1 12.5479 0.0407 3.0077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274039099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:34 Heat of formation + Delta-G solvation = -109.758083 kcal Electronic energy + Delta-G solvation = -31485.886598 eV Core-core repulsion = 27385.476351 eV Total energy + Delta-G solvation = -4100.410248 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.43830 -40.19732 -38.63071 -36.67624 -35.67984 -33.76119 -33.27065 -32.21604 -31.67450 -30.21233 -28.22163 -27.98316 -25.33736 -24.46571 -24.02557 -23.25670 -22.23654 -21.11567 -21.00398 -19.54812 -18.03152 -17.87685 -16.93498 -16.86976 -16.51139 -16.47473 -15.80258 -15.58413 -14.90857 -14.63346 -14.41733 -14.35552 -14.10838 -13.92068 -13.64485 -13.54048 -13.03096 -12.87474 -12.65152 -12.52192 -12.34526 -12.22368 -12.07781 -12.02667 -11.79152 -11.75570 -11.64861 -11.58823 -11.29763 -11.01355 -10.93424 -10.69613 -10.67866 -10.63649 -10.51953 -10.35116 -9.98234 -9.44531 -9.39582 -9.16126 -8.82858 -8.37715 -7.92574 -6.02719 -4.05525 2.16135 2.26270 2.75138 2.96835 3.30314 3.37120 3.39323 4.25274 4.41833 4.44068 4.51532 4.60136 4.68153 4.69987 4.75699 4.80235 4.88131 4.98372 5.03767 5.14643 5.25470 5.28711 5.33587 5.38158 5.42080 5.48235 5.50641 5.53053 5.58042 5.68088 5.76718 5.85770 5.92280 5.96963 5.99798 6.04726 6.15372 6.23340 6.30568 6.36910 6.45648 6.48723 6.86384 7.22597 7.35614 7.39990 7.67865 7.71498 7.82346 8.01805 8.18936 8.38123 9.01392 9.58696 11.08344 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.002794 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.570498 B =10019.714846 C =10654.706743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.361 6.361 4 C 0.453 3.547 5 O -0.484 6.484 6 C 0.160 3.840 7 H 0.122 0.878 8 C -0.164 4.164 9 N -0.591 5.591 10 C 0.534 3.466 11 O -0.540 6.540 12 C -0.125 4.125 13 C -0.154 4.154 14 C 0.071 3.929 15 H 0.110 0.890 16 C 0.140 3.860 17 H 0.093 0.907 18 C -0.142 4.142 19 C 0.035 3.965 20 N -0.509 5.509 21 C 0.050 3.950 22 C 0.025 3.975 23 C -0.523 4.523 24 H 0.054 0.946 25 C 0.060 3.940 26 N -0.891 5.891 27 Si 0.891 3.109 28 H -0.280 1.280 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.044 0.956 46 H 0.077 0.923 47 H 0.029 0.971 48 H 0.065 0.935 49 H 0.025 0.975 50 H 0.019 0.981 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.618 6.157 -5.783 23.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.293 3.707 5 O -0.368 6.368 6 C 0.054 3.946 7 H 0.140 0.860 8 C -0.222 4.222 9 N -0.325 5.325 10 C 0.325 3.675 11 O -0.417 6.417 12 C -0.166 4.166 13 C -0.193 4.193 14 C -0.038 4.038 15 H 0.128 0.872 16 C 0.036 3.964 17 H 0.111 0.889 18 C -0.181 4.181 19 C -0.094 4.094 20 N -0.232 5.232 21 C -0.077 4.077 22 C -0.012 4.012 23 C -0.562 4.562 24 H 0.072 0.928 25 C -0.142 4.142 26 N -0.530 5.530 27 Si 0.719 3.281 28 H -0.207 1.207 29 H -0.212 1.212 30 H -0.199 1.199 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.120 0.880 43 H 0.090 0.910 44 H 0.093 0.907 45 H 0.062 0.938 46 H 0.096 0.904 47 H 0.048 0.952 48 H 0.084 0.916 49 H 0.043 0.957 50 H 0.037 0.963 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.759 5.322 -5.635 23.098 hybrid contribution 1.334 -0.065 -0.694 1.505 sum -20.425 5.257 -6.329 22.020 Atomic orbital electron populations 1.21795 0.92654 1.02915 1.03409 1.22994 0.95171 0.80327 1.02670 1.86455 1.24445 1.32363 1.84521 1.23966 0.80724 0.93060 0.72927 1.90691 1.60212 1.42607 1.43338 1.20470 0.81528 0.89981 1.02655 0.85987 1.22177 1.01996 1.00396 0.97589 1.47377 1.04054 1.57569 1.23475 1.20809 0.91156 0.75409 0.80086 1.90618 1.65437 1.46878 1.38735 1.21551 0.89698 1.02555 1.02761 1.22316 1.03271 0.98462 0.95232 1.22928 0.90272 0.98130 0.92429 0.87160 1.21635 0.93956 0.92329 0.88518 0.88949 1.22914 0.98255 0.95377 1.01573 1.22897 0.93460 0.94245 0.98806 1.65143 1.06478 1.01138 1.50467 1.22572 0.84075 1.02461 0.98543 1.19150 0.94493 0.90014 0.97563 1.21156 0.91553 0.97745 1.45727 0.92791 1.24982 0.98584 0.95402 0.95243 1.69962 1.35265 1.02202 1.45604 0.86620 0.85821 0.77332 0.78367 1.20659 1.21246 1.19942 0.91514 0.91509 0.90306 0.91258 0.91329 0.90618 0.91063 0.89571 0.88230 0.87592 0.91633 0.88043 0.91027 0.90714 0.93791 0.90427 0.95243 0.91641 0.95665 0.96266 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 10.29 37.16 0.38 -0.61 16 2 C 0.06 0.62 6.19 37.16 0.23 0.85 16 3 O -0.36 -4.25 10.12 -39.27 -0.40 -4.64 16 4 C 0.45 6.29 6.55 36.00 0.24 6.52 16 5 O -0.48 -8.52 14.29 -25.72 -0.37 -8.89 16 6 C 0.16 1.80 2.99 -69.08 -0.21 1.60 16 7 H 0.12 1.01 7.80 -51.93 -0.40 0.61 16 8 C -0.16 -1.62 9.03 37.16 0.34 -1.29 16 9 N -0.59 -7.71 2.24 -159.56 -0.36 -8.07 16 10 C 0.53 8.25 6.27 -11.00 -0.07 8.18 16 11 O -0.54 -9.66 13.07 -15.25 -0.20 -9.86 16 12 C -0.13 -1.82 6.07 -28.11 -0.17 -1.99 16 13 C -0.15 -2.28 3.87 -26.72 -0.10 -2.38 16 14 C 0.07 1.09 2.52 -65.84 -0.17 0.93 16 15 H 0.11 1.96 7.66 -51.93 -0.40 1.56 16 16 C 0.14 1.74 3.00 -67.42 -0.20 1.54 16 17 H 0.09 1.11 8.11 -51.93 -0.42 0.69 16 18 C -0.14 -1.47 5.92 -25.36 -0.15 -1.62 16 19 C 0.03 0.43 5.98 -2.53 -0.02 0.42 16 20 N -0.51 -8.24 5.34 -222.32 -1.19 -9.43 16 21 C 0.05 0.97 4.25 -3.82 -0.02 0.95 16 22 C 0.03 0.61 4.42 -27.88 -0.12 0.49 16 23 C -0.52 -14.19 9.11 -34.44 -0.31 -14.51 16 24 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 25 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 26 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 27 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 30 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.75 8.13 -51.93 -0.42 0.32 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.07 0.62 8.11 -51.93 -0.42 0.20 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.09 1.10 5.98 -51.93 -0.31 0.79 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 41 H 0.06 0.89 6.57 -51.93 -0.34 0.55 16 42 H 0.10 1.75 5.42 -51.93 -0.28 1.46 16 43 H 0.07 0.72 7.97 -51.93 -0.41 0.31 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.55 7.36 -51.93 -0.38 0.17 16 46 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.03 0.55 6.14 -51.93 -0.32 0.23 16 48 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 49 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.02 0.49 6.10 -51.93 -0.32 0.17 16 51 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -32.93 392.11 -9.96 -42.89 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -8.62 Total: 0.69 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.45 Total: 0.64 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.81 Total: -42.97 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.96 Total: -23.39 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.93 -9.96 -42.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.871 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds