Wall clock time and date at job start Tue Mar 31 2020 20:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45204 * 109.46912 * 2 1 4 4 C 1.34235 * 116.99738 * 180.02562 * 3 2 1 5 5 O 1.20829 * 120.00152 * 359.97438 * 4 3 2 6 6 C 1.50694 * 119.99687 * 179.97438 * 4 3 2 7 7 H 1.09004 * 109.47248 * 60.00211 * 6 4 3 8 8 C 1.52999 * 109.47331 * 299.99738 * 6 4 3 9 9 N 1.46506 * 109.46948 * 179.97438 * 6 4 3 10 10 C 1.35160 * 118.77870 * 60.05557 * 9 6 4 11 11 O 1.21282 * 118.14065 * 0.47350 * 10 9 6 12 12 C 1.50310 * 123.17934 * 180.73083 * 10 9 6 13 13 C 1.52919 * 109.41953 * 338.93071 * 12 10 9 14 14 C 1.53104 * 109.19198 * 52.12422 * 13 12 10 15 15 H 1.09006 * 112.34008 * 60.03166 * 14 13 12 16 16 C 1.44812 * 117.36431 * 239.99585 * 9 6 4 17 17 H 1.09002 * 110.00596 * 44.46467 * 16 9 6 18 18 C 1.54363 * 110.63490 * 282.67284 * 16 9 6 19 19 C 1.54264 * 104.82337 * 216.44009 * 18 16 9 20 20 N 1.48054 * 106.83610 * 358.54844 * 19 18 16 21 21 C 1.46895 * 111.00060 * 146.61159 * 20 19 18 22 22 C 1.53007 * 109.47039 * 184.18932 * 21 20 19 23 23 C 1.50701 * 109.47000 * 185.06430 * 22 21 20 24 24 H 1.07999 * 120.00068 * 0.02562 * 23 22 21 25 25 C 1.37880 * 119.99777 * 180.02562 * 23 22 21 26 26 N 1.31516 * 119.99927 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 120.00020 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47195 * 89.99618 * 27 25 23 29 29 H 1.48500 * 109.47225 * 209.99728 * 27 25 23 30 30 H 1.48501 * 109.46726 * 329.99950 * 27 25 23 31 31 H 1.09001 * 109.47024 * 299.99925 * 1 2 3 32 32 H 1.08996 * 109.47542 * 60.00032 * 1 2 3 33 33 H 1.09000 * 109.46985 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47024 * 240.00075 * 2 1 3 35 35 H 1.08996 * 109.47542 * 119.99968 * 2 1 3 36 36 H 1.09003 * 109.47072 * 60.00167 * 8 6 4 37 37 H 1.09005 * 109.47422 * 179.97438 * 8 6 4 38 38 H 1.09003 * 109.47008 * 299.99991 * 8 6 4 39 39 H 1.08998 * 109.47930 * 218.94266 * 12 10 9 40 40 H 1.08996 * 109.47537 * 98.91238 * 12 10 9 41 41 H 1.08998 * 109.51737 * 292.21076 * 13 12 10 42 42 H 1.08996 * 109.56605 * 172.06879 * 13 12 10 43 43 H 1.09002 * 110.36558 * 335.26859 * 18 16 9 44 44 H 1.08990 * 110.36873 * 97.60226 * 18 16 9 45 45 H 1.08998 * 109.98565 * 117.89228 * 19 18 16 46 46 H 1.08995 * 109.98844 * 239.20466 * 19 18 16 47 47 H 1.08997 * 109.47194 * 304.18806 * 21 20 19 48 48 H 1.09000 * 109.47385 * 64.19361 * 21 20 19 49 49 H 1.09001 * 109.47149 * 305.06970 * 22 21 20 50 50 H 1.09006 * 109.46963 * 65.06542 * 22 21 20 51 51 H 0.97002 * 120.00113 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9206 2.9374 -0.0012 7 1 3.5850 3.4698 0.8888 8 6 3.4487 3.6840 -1.2505 9 7 5.3837 2.8608 -0.0010 10 6 6.0026 2.2357 -1.0272 11 8 5.3155 1.7710 -1.9120 12 6 7.4954 2.0859 -1.1191 13 6 8.1673 3.1408 -0.2393 14 6 7.5728 3.0738 1.1700 15 1 7.7200 2.0994 1.6359 16 6 6.0820 3.4687 1.1124 17 1 5.5898 3.2069 2.0491 18 6 6.1309 5.0031 0.9515 19 6 7.5122 5.4139 1.5020 20 7 8.1712 4.1751 1.9744 21 6 9.6249 4.2430 1.7746 22 6 10.2578 2.9092 2.1763 23 6 11.7583 3.0189 2.0900 24 1 12.2149 3.9473 1.7801 25 6 12.5482 1.9341 2.4067 26 7 11.9922 0.8038 2.7845 27 14 14.4082 2.0704 2.3004 28 1 14.9464 2.5290 3.6063 29 1 14.9835 0.7426 1.9666 30 1 14.7733 3.0479 1.2437 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 2.3601 3.7411 -1.2501 37 1 3.8649 4.6915 -1.2507 38 1 3.7844 3.1516 -2.1404 39 1 7.8112 2.2204 -2.1536 40 1 7.7825 1.0914 -0.7776 41 1 7.9939 4.1308 -0.6610 42 1 9.2390 2.9478 -0.1920 43 1 6.0449 5.2772 -0.1000 44 1 5.3364 5.4711 1.5326 45 1 8.1062 5.8740 0.7124 46 1 7.3906 6.1106 2.3313 47 1 9.8383 4.4450 0.7250 48 1 10.0393 5.0416 2.3899 49 1 9.9696 2.6634 3.1984 50 1 9.9115 2.1252 1.5027 51 1 12.5479 0.0407 3.0077 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039099.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:54:33 Heat of formation + Delta-G solvation = -130.201830 kcal Electronic energy + Delta-G solvation = -31486.773106 eV Core-core repulsion = 27385.476351 eV Total energy + Delta-G solvation = -4101.296755 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.54367 -41.28522 -39.83532 -37.73375 -36.87974 -35.43687 -34.60875 -33.49452 -32.64723 -31.37352 -29.73530 -29.14066 -26.26434 -26.21478 -25.15503 -24.20024 -23.49597 -22.41368 -22.04346 -20.86870 -19.26164 -18.91092 -18.46075 -17.99497 -17.89034 -17.48750 -17.09154 -16.68888 -16.51416 -16.10153 -15.69531 -15.45423 -15.17477 -15.12505 -14.71392 -14.54130 -14.41004 -13.85239 -13.63737 -13.60000 -13.55865 -13.43501 -13.26804 -13.15741 -12.98849 -12.89241 -12.79437 -12.61120 -12.53919 -12.46192 -12.41594 -12.36608 -11.93605 -11.79736 -11.62080 -11.56387 -11.42431 -11.24225 -11.18766 -10.62286 -10.53119 -9.89141 -9.22288 -8.18075 -6.28433 1.12393 1.24496 1.40916 1.41514 1.52221 1.63378 1.94768 2.41243 3.08087 3.16107 3.35840 3.48617 3.58927 3.66328 3.81752 3.93761 3.94911 4.02008 4.06447 4.09364 4.21156 4.25652 4.30142 4.37682 4.40335 4.56507 4.60325 4.64574 4.72880 4.74710 4.78974 4.84511 4.89759 4.90548 4.95898 5.10489 5.11149 5.11960 5.17076 5.24734 5.26715 5.40715 5.44236 5.52184 5.64598 5.84089 5.98809 6.17890 6.27195 6.32937 6.67791 6.89696 7.02907 7.40711 8.93515 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.002794 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.570498 B =10019.714846 C =10654.706743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.354 6.354 4 C 0.450 3.550 5 O -0.533 6.533 6 C 0.155 3.845 7 H 0.164 0.836 8 C -0.155 4.155 9 N -0.585 5.585 10 C 0.532 3.468 11 O -0.568 6.568 12 C -0.124 4.124 13 C -0.140 4.140 14 C 0.065 3.935 15 H 0.071 0.929 16 C 0.145 3.855 17 H 0.102 0.898 18 C -0.126 4.126 19 C 0.033 3.967 20 N -0.521 5.521 21 C 0.069 3.931 22 C 0.035 3.965 23 C -0.539 4.539 24 H 0.061 0.939 25 C 0.002 3.998 26 N -0.932 5.932 27 Si 0.960 3.040 28 H -0.273 1.273 29 H -0.286 1.286 30 H -0.262 1.262 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.111 0.889 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.083 0.917 44 H 0.110 0.890 45 H 0.048 0.952 46 H 0.093 0.907 47 H 0.037 0.963 48 H 0.065 0.935 49 H -0.012 1.012 50 H -0.001 1.001 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.210 9.100 -5.959 25.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.020 4.020 3 O -0.270 6.270 4 C 0.292 3.708 5 O -0.421 6.421 6 C 0.050 3.950 7 H 0.181 0.819 8 C -0.212 4.212 9 N -0.318 5.318 10 C 0.323 3.677 11 O -0.447 6.447 12 C -0.165 4.165 13 C -0.179 4.179 14 C -0.044 4.044 15 H 0.089 0.911 16 C 0.041 3.959 17 H 0.120 0.880 18 C -0.165 4.165 19 C -0.095 4.095 20 N -0.244 5.244 21 C -0.059 4.059 22 C -0.002 4.002 23 C -0.577 4.577 24 H 0.079 0.921 25 C -0.196 4.196 26 N -0.572 5.572 27 Si 0.785 3.215 28 H -0.199 1.199 29 H -0.212 1.212 30 H -0.186 1.186 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.129 0.871 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.055 0.945 48 H 0.083 0.917 49 H 0.007 0.993 50 H 0.017 0.983 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.385 8.311 -5.796 25.486 hybrid contribution 1.765 -1.047 -0.603 2.139 sum -21.620 7.264 -6.399 23.688 Atomic orbital electron populations 1.21799 0.89643 1.04352 1.04052 1.23229 0.97476 0.79496 1.01764 1.86463 1.23372 1.33294 1.83880 1.24627 0.81030 0.93708 0.71448 1.90680 1.61306 1.44326 1.45764 1.20901 0.79952 0.88894 1.05278 0.81921 1.22124 1.03328 1.00659 0.95117 1.47356 1.05169 1.56709 1.22599 1.20805 0.91042 0.75454 0.80445 1.90610 1.65912 1.48129 1.40017 1.21517 0.89989 1.01570 1.03382 1.22134 1.01239 0.99372 0.95127 1.22801 0.92981 0.96467 0.92135 0.91060 1.21616 0.91500 0.94095 0.88676 0.88024 1.22882 0.97856 0.92879 1.02895 1.23031 0.94322 0.92479 0.99690 1.65017 1.04679 1.03293 1.51435 1.22171 0.86155 0.98928 0.98638 1.18950 0.93914 0.92519 0.94865 1.21632 0.93084 0.97954 1.45058 0.92051 1.25912 1.03763 0.95040 0.94908 1.70109 1.37130 1.03058 1.46881 0.85516 0.79653 0.77471 0.78823 1.19907 1.21168 1.18577 0.90612 0.91021 0.88504 0.92708 0.91868 0.88581 0.88741 0.92767 0.87037 0.89435 0.89624 0.91014 0.89830 0.87108 0.93342 0.88848 0.94505 0.91694 0.99347 0.98321 0.92978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.05 1.06 6.19 71.98 0.45 1.51 16 3 O -0.35 -7.93 10.12 -51.46 -0.52 -8.45 16 4 C 0.45 12.20 6.55 71.23 0.47 12.66 16 5 O -0.53 -19.35 14.29 28.62 0.41 -18.94 16 6 C 0.15 3.11 2.99 44.24 0.13 3.24 16 7 H 0.16 1.95 7.80 -2.38 -0.02 1.93 16 8 C -0.15 -2.60 9.03 71.98 0.65 -1.95 16 9 N -0.59 -14.46 2.24 -776.89 -1.74 -16.20 16 10 C 0.53 16.51 6.27 87.47 0.55 17.06 16 11 O -0.57 -20.70 13.07 16.86 0.22 -20.48 16 12 C -0.12 -3.77 6.07 29.70 0.18 -3.59 16 13 C -0.14 -4.21 3.87 30.60 0.12 -4.09 16 14 C 0.07 2.03 2.52 45.01 0.11 2.15 16 15 H 0.07 2.76 7.66 -2.38 -0.02 2.74 16 16 C 0.15 3.32 3.00 46.22 0.14 3.46 16 17 H 0.10 2.19 8.11 -2.39 -0.02 2.17 16 18 C -0.13 -2.06 5.92 31.49 0.19 -1.88 16 19 C 0.03 0.71 5.98 86.51 0.52 1.23 16 20 N -0.52 -16.56 5.34 -857.29 -4.58 -21.14 16 21 C 0.07 2.67 4.25 86.31 0.37 3.03 16 22 C 0.03 1.78 4.42 29.85 0.13 1.91 16 23 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 24 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 25 C 0.00 0.09 5.46 84.66 0.46 0.56 16 26 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 27 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 29 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 30 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.05 1.22 8.13 -2.39 -0.02 1.20 16 35 H 0.06 1.30 8.13 -2.39 -0.02 1.28 16 36 H 0.10 1.23 8.11 -2.39 -0.02 1.21 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.05 1.31 5.98 -2.39 -0.01 1.30 16 39 H 0.11 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.09 2.21 6.57 -2.39 -0.02 2.19 16 42 H 0.07 2.59 5.42 -2.39 -0.01 2.58 16 43 H 0.08 1.25 7.97 -2.39 -0.02 1.23 16 44 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.05 1.05 7.36 -2.39 -0.02 1.03 16 46 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.04 1.37 6.14 -2.39 -0.01 1.35 16 48 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 49 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 50 H 0.00 -0.08 6.10 -2.38 -0.01 -0.10 16 51 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -76.04 392.11 2.44 -73.60 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.91 Total: 17.29 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: 5.43 Total: 4.76 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -6.04 Total: -93.85 kcal Atomic # 8 Polarization: -47.99 SS G_CDS: 0.11 Total: -47.88 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -76.04 2.44 -73.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039099.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.600 kcal (2) G-P(sol) polarization free energy of solvation -76.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds