Wall clock time and date at job start Tue Mar 31 2020 20:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46770 * 2 1 4 4 C 1.34228 * 116.99885 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00079 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.87478 * 28.91898 * 6 4 3 8 8 C 1.54592 * 110.99078 * 152.76108 * 6 4 3 9 9 N 1.46886 * 105.46265 * 93.17294 * 8 6 4 10 10 C 1.46504 * 124.34557 * 196.88713 * 9 8 6 11 11 C 1.34580 * 111.29047 * 16.87273 * 9 8 6 12 12 O 1.21282 * 125.02437 * 179.30215 * 11 9 8 13 13 C 1.50781 * 109.93907 * 359.32106 * 11 9 8 14 14 C 1.52540 * 110.64681 * 102.81092 * 13 11 9 15 15 C 1.53145 * 109.32427 * 66.58956 * 14 13 11 16 16 N 1.46853 * 109.45355 * 58.24920 * 15 14 13 17 17 C 1.46900 * 110.99773 * 173.65477 * 16 15 14 18 18 C 1.52999 * 109.47198 * 314.35668 * 17 16 15 19 19 C 1.50703 * 109.47496 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99473 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00001 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46995 * 90.00134 * 23 21 19 25 25 H 1.48499 * 109.47378 * 210.00164 * 23 21 19 26 26 H 1.48506 * 109.47285 * 330.00406 * 23 21 19 27 27 C 1.46856 * 111.31363 * 297.83547 * 16 15 14 28 28 C 1.52544 * 110.64051 * 225.61315 * 13 11 9 29 29 H 1.08997 * 109.47420 * 300.00012 * 1 2 3 30 30 H 1.09006 * 109.47478 * 60.00542 * 1 2 3 31 31 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47062 * 239.99580 * 2 1 3 33 33 H 1.08998 * 109.46672 * 119.99477 * 2 1 3 34 34 H 1.08992 * 110.24121 * 212.15058 * 8 6 4 35 35 H 1.08997 * 110.23951 * 334.14722 * 8 6 4 36 36 H 1.09001 * 109.46708 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.46971 * 299.95786 * 10 9 8 38 38 H 1.09004 * 109.46650 * 59.95751 * 10 9 8 39 39 H 1.09002 * 109.50204 * 186.54923 * 14 13 11 40 40 H 1.09005 * 109.49810 * 306.63437 * 14 13 11 41 41 H 1.09000 * 109.47219 * 298.26050 * 15 14 13 42 42 H 1.08991 * 109.48039 * 178.25115 * 15 14 13 43 43 H 1.09000 * 109.47108 * 74.36002 * 17 16 15 44 44 H 1.09002 * 109.47208 * 194.35997 * 17 16 15 45 45 H 1.09000 * 109.47364 * 300.00178 * 18 17 16 46 46 H 1.09002 * 109.46772 * 60.00062 * 18 17 16 47 47 H 0.97001 * 119.99875 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.47370 * 302.18466 * 27 16 15 49 49 H 1.09000 * 109.47807 * 182.17473 * 27 16 15 50 50 H 1.08998 * 109.49302 * 53.36934 * 28 13 11 51 51 H 1.08995 * 109.49426 * 173.43263 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.2454 3.6373 0.4914 8 6 5.3183 2.9590 0.6589 9 7 6.2747 2.7939 -0.4436 10 6 7.6765 2.4049 -0.2706 11 6 5.6975 3.0457 -1.6330 12 8 6.2620 2.9954 -2.7052 13 6 4.2453 3.4000 -1.4351 14 6 4.0373 4.9060 -1.5595 15 6 4.3188 5.3390 -3.0013 16 7 3.4300 4.6083 -3.9138 17 6 3.5649 5.1046 -5.2898 18 6 3.5543 6.6346 -5.2835 19 6 3.6921 7.1438 -6.6951 20 1 3.7790 6.4459 -7.5148 21 6 3.7082 8.5005 -6.9401 22 7 3.6039 9.3502 -5.9418 23 14 3.8798 9.1316 -8.6898 24 1 2.5321 9.2903 -9.2932 25 1 4.5739 10.4444 -8.6768 26 1 4.6696 8.1620 -9.4907 27 6 3.6723 3.1613 -3.8501 28 6 3.3687 2.6551 -2.4369 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.4834 3.9119 1.1616 35 1 5.4133 2.1363 1.3677 36 1 8.1625 2.3546 -1.2450 37 1 8.1842 3.1426 0.3507 38 1 7.7257 1.4283 0.2112 39 1 3.0082 5.1539 -1.2996 40 1 4.7183 5.4243 -0.8845 41 1 5.3566 5.1184 -3.2508 42 1 4.1408 6.4097 -3.1005 43 1 4.5043 4.7495 -5.7136 44 1 2.7332 4.7380 -5.8915 45 1 2.6149 6.9896 -4.8596 46 1 4.3859 7.0011 -4.6817 47 1 3.6156 10.3048 -6.1142 48 1 4.7149 2.9564 -4.0934 49 1 3.0256 2.6526 -4.5650 50 1 3.5784 1.5870 -2.3802 51 1 2.3188 2.8326 -2.2041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274041014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:21 Heat of formation + Delta-G solvation = -113.428325 kcal Electronic energy + Delta-G solvation = -31549.054445 eV Core-core repulsion = 27448.485044 eV Total energy + Delta-G solvation = -4100.569401 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.97547 -40.17980 -37.85012 -37.14059 -36.27171 -34.58077 -32.86968 -32.02950 -30.96542 -30.65508 -28.72559 -27.52034 -25.91556 -24.55404 -23.62726 -23.20706 -22.33273 -21.20895 -20.66944 -19.71426 -18.71268 -18.15354 -17.21901 -16.77181 -16.49310 -16.32023 -15.68064 -15.40770 -14.79114 -14.60950 -14.49340 -14.31739 -14.01242 -13.95982 -13.78475 -13.58762 -13.33940 -12.89219 -12.71656 -12.65911 -12.53045 -12.48781 -12.25476 -12.16235 -12.03330 -11.92503 -11.83885 -11.70827 -11.13668 -11.00176 -10.89573 -10.82271 -10.75292 -10.50380 -10.30299 -10.20152 -9.89902 -9.47475 -9.23031 -9.01280 -8.86802 -8.28952 -7.50924 -5.95906 -3.97190 1.84140 2.26548 2.55529 2.82923 3.35554 3.41366 3.45503 3.92039 3.95788 4.22038 4.44412 4.46572 4.60517 4.64205 4.65484 4.78744 4.88278 4.93152 4.94661 5.08792 5.15090 5.22113 5.31416 5.38453 5.40319 5.45094 5.45948 5.56341 5.63163 5.67059 5.69313 5.77015 5.89471 5.91209 6.13092 6.14891 6.29998 6.32994 6.40832 6.48591 6.63917 6.65850 6.94489 7.03049 7.45166 7.59539 7.70982 7.88447 7.92662 8.10526 8.12903 8.49587 9.09286 9.66097 11.15594 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.002951 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.574189 B = 9486.074517 C =10603.429621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.350 6.350 4 C 0.478 3.522 5 O -0.502 6.502 6 C -0.099 4.099 7 H 0.134 0.866 8 C 0.123 3.877 9 N -0.622 5.622 10 C 0.097 3.903 11 C 0.530 3.470 12 O -0.508 6.508 13 C -0.072 4.072 14 C -0.093 4.093 15 C 0.047 3.953 16 N -0.535 5.535 17 C 0.064 3.936 18 C 0.022 3.978 19 C -0.519 4.519 20 H 0.054 0.946 21 C 0.058 3.942 22 N -0.895 5.895 23 Si 0.892 3.108 24 H -0.280 1.280 25 H -0.287 1.287 26 H -0.274 1.274 27 C 0.046 3.954 28 C -0.098 4.098 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.038 0.962 42 H 0.099 0.901 43 H 0.020 0.980 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.020 0.980 47 H 0.260 0.740 48 H 0.057 0.943 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.207 -17.262 20.133 26.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.012 4.012 3 O -0.267 6.267 4 C 0.321 3.679 5 O -0.390 6.390 6 C -0.118 4.118 7 H 0.152 0.848 8 C -0.001 4.001 9 N -0.358 5.358 10 C -0.045 4.045 11 C 0.317 3.683 12 O -0.382 6.382 13 C -0.076 4.076 14 C -0.131 4.131 15 C -0.081 4.081 16 N -0.260 5.260 17 C -0.063 4.063 18 C -0.015 4.015 19 C -0.558 4.558 20 H 0.072 0.928 21 C -0.143 4.143 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.199 1.199 27 C -0.083 4.083 28 C -0.136 4.136 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.117 0.883 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.075 0.925 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.088 -17.377 19.746 26.325 hybrid contribution 0.958 -0.024 -1.037 1.412 sum -0.130 -17.401 18.708 25.550 Atomic orbital electron populations 1.21816 0.92351 1.03014 1.03860 1.23058 0.95595 0.79984 1.02559 1.86536 1.23962 1.32523 1.83660 1.23122 0.80910 0.91854 0.72048 1.90691 1.60476 1.42759 1.45038 1.22159 0.97725 0.92629 0.99318 0.84778 1.21974 0.85271 1.03127 0.89691 1.48085 1.11030 1.69411 1.07234 1.21537 0.79900 0.99687 1.03362 1.20510 0.88602 0.75626 0.83549 1.90707 1.69057 1.51549 1.26909 1.21063 0.94032 0.99868 0.92650 1.21531 1.03360 0.89435 0.98772 1.22228 0.95197 1.00543 0.90162 1.62062 1.52837 1.01975 1.09130 1.22277 0.98620 0.99382 0.86030 1.19237 0.97684 0.87677 0.96936 1.21208 1.49871 0.91615 0.93079 0.92783 1.24978 0.95382 0.97024 0.96940 1.69962 1.50776 1.02070 1.30622 0.86600 0.78153 0.78187 0.85094 1.20658 1.21276 1.19938 1.22164 1.01146 0.90048 0.94915 1.21534 0.99649 0.97453 0.94966 0.91402 0.91077 0.90253 0.91150 0.91303 0.89287 0.89539 0.89850 0.92048 0.92117 0.89262 0.91234 0.94378 0.88316 0.96144 0.92037 0.95701 0.96189 0.93069 0.92511 0.91279 0.92414 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.29 37.16 0.38 -0.52 16 2 C 0.06 0.50 6.19 37.16 0.23 0.73 16 3 O -0.35 -3.50 9.97 -39.25 -0.39 -3.89 16 4 C 0.48 5.23 4.90 36.01 0.18 5.41 16 5 O -0.50 -6.70 15.86 -18.75 -0.30 -6.99 16 6 C -0.10 -0.94 3.08 -90.35 -0.28 -1.21 16 7 H 0.13 0.90 7.87 -51.93 -0.41 0.49 16 8 C 0.12 1.04 6.56 -3.00 -0.02 1.02 16 9 N -0.62 -7.29 3.34 -180.29 -0.60 -7.89 16 10 C 0.10 0.93 11.15 59.85 0.67 1.59 16 11 C 0.53 7.96 6.33 -11.03 -0.07 7.89 16 12 O -0.51 -9.60 13.60 5.56 0.08 -9.53 16 13 C -0.07 -0.93 0.46 -155.50 -0.07 -1.00 16 14 C -0.09 -1.24 4.77 -26.89 -0.13 -1.37 16 15 C 0.05 0.85 4.64 -3.78 -0.02 0.83 16 16 N -0.54 -10.26 4.79 -234.52 -1.12 -11.39 16 17 C 0.06 1.43 5.21 -3.82 -0.02 1.41 16 18 C 0.02 0.58 4.22 -27.88 -0.12 0.46 16 19 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 20 H 0.05 1.53 7.74 -52.48 -0.41 1.13 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 23 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.05 0.78 5.20 -3.77 -0.02 0.76 16 28 C -0.10 -1.38 3.86 -26.89 -0.10 -1.48 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.60 8.13 -51.93 -0.42 0.18 16 33 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.67 7.55 -51.93 -0.39 0.27 16 36 H 0.08 0.93 7.54 -51.93 -0.39 0.53 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.04 0.77 6.68 -51.93 -0.35 0.43 16 42 H 0.10 2.00 5.78 -51.93 -0.30 1.70 16 43 H 0.02 0.48 8.08 -51.93 -0.42 0.06 16 44 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.02 0.55 6.20 -51.93 -0.32 0.23 16 47 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 48 H 0.06 1.10 5.78 -51.93 -0.30 0.80 16 49 H 0.07 1.13 8.12 -51.93 -0.42 0.71 16 50 H 0.06 0.83 7.09 -51.93 -0.37 0.46 16 51 H 0.09 1.16 7.96 -51.93 -0.41 0.75 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -35.14 395.50 -9.16 -44.30 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -8.70 Total: -2.06 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 0.20 Total: 0.75 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -0.99 Total: -45.58 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: -0.61 Total: -20.41 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.14 -9.16 -44.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274041014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.129 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds