Wall clock time and date at job start Tue Mar 31 2020 20:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45200 * 109.46770 * 2 1 4 4 C 1.34228 * 116.99885 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00063 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00079 * 179.97438 * 4 3 2 7 7 H 1.09001 * 110.87478 * 28.91898 * 6 4 3 8 8 C 1.54592 * 110.99078 * 152.76108 * 6 4 3 9 9 N 1.46886 * 105.46265 * 93.17294 * 8 6 4 10 10 C 1.46504 * 124.34557 * 196.88713 * 9 8 6 11 11 C 1.34580 * 111.29047 * 16.87273 * 9 8 6 12 12 O 1.21282 * 125.02437 * 179.30215 * 11 9 8 13 13 C 1.50781 * 109.93907 * 359.32106 * 11 9 8 14 14 C 1.52540 * 110.64681 * 102.81092 * 13 11 9 15 15 C 1.53145 * 109.32427 * 66.58956 * 14 13 11 16 16 N 1.46853 * 109.45355 * 58.24920 * 15 14 13 17 17 C 1.46900 * 110.99773 * 173.65477 * 16 15 14 18 18 C 1.52999 * 109.47198 * 314.35668 * 17 16 15 19 19 C 1.50703 * 109.47496 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99473 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00276 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00001 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00115 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46995 * 90.00134 * 23 21 19 25 25 H 1.48499 * 109.47378 * 210.00164 * 23 21 19 26 26 H 1.48506 * 109.47285 * 330.00406 * 23 21 19 27 27 C 1.46856 * 111.31363 * 297.83547 * 16 15 14 28 28 C 1.52544 * 110.64051 * 225.61315 * 13 11 9 29 29 H 1.08997 * 109.47420 * 300.00012 * 1 2 3 30 30 H 1.09006 * 109.47478 * 60.00542 * 1 2 3 31 31 H 1.09003 * 109.46938 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47062 * 239.99580 * 2 1 3 33 33 H 1.08998 * 109.46672 * 119.99477 * 2 1 3 34 34 H 1.08992 * 110.24121 * 212.15058 * 8 6 4 35 35 H 1.08997 * 110.23951 * 334.14722 * 8 6 4 36 36 H 1.09001 * 109.46708 * 179.97438 * 10 9 8 37 37 H 1.08995 * 109.46971 * 299.95786 * 10 9 8 38 38 H 1.09004 * 109.46650 * 59.95751 * 10 9 8 39 39 H 1.09002 * 109.50204 * 186.54923 * 14 13 11 40 40 H 1.09005 * 109.49810 * 306.63437 * 14 13 11 41 41 H 1.09000 * 109.47219 * 298.26050 * 15 14 13 42 42 H 1.08991 * 109.48039 * 178.25115 * 15 14 13 43 43 H 1.09000 * 109.47108 * 74.36002 * 17 16 15 44 44 H 1.09002 * 109.47208 * 194.35997 * 17 16 15 45 45 H 1.09000 * 109.47364 * 300.00178 * 18 17 16 46 46 H 1.09002 * 109.46772 * 60.00062 * 18 17 16 47 47 H 0.97001 * 119.99875 * 179.97438 * 22 21 19 48 48 H 1.08999 * 109.47370 * 302.18466 * 27 16 15 49 49 H 1.09000 * 109.47807 * 182.17473 * 27 16 15 50 50 H 1.08998 * 109.49302 * 53.36934 * 28 13 11 51 51 H 1.08995 * 109.49426 * 173.43263 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9206 2.9375 -0.0012 7 1 3.2454 3.6373 0.4914 8 6 5.3183 2.9590 0.6589 9 7 6.2747 2.7939 -0.4436 10 6 7.6765 2.4049 -0.2706 11 6 5.6975 3.0457 -1.6330 12 8 6.2620 2.9954 -2.7052 13 6 4.2453 3.4000 -1.4351 14 6 4.0373 4.9060 -1.5595 15 6 4.3188 5.3390 -3.0013 16 7 3.4300 4.6083 -3.9138 17 6 3.5649 5.1046 -5.2898 18 6 3.5543 6.6346 -5.2835 19 6 3.6921 7.1438 -6.6951 20 1 3.7790 6.4459 -7.5148 21 6 3.7082 8.5005 -6.9401 22 7 3.6039 9.3502 -5.9418 23 14 3.8798 9.1316 -8.6898 24 1 2.5321 9.2903 -9.2932 25 1 4.5739 10.4444 -8.6768 26 1 4.6696 8.1620 -9.4907 27 6 3.6723 3.1613 -3.8501 28 6 3.3687 2.6551 -2.4369 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 5.4834 3.9119 1.1616 35 1 5.4133 2.1363 1.3677 36 1 8.1625 2.3546 -1.2450 37 1 8.1842 3.1426 0.3507 38 1 7.7257 1.4283 0.2112 39 1 3.0082 5.1539 -1.2996 40 1 4.7183 5.4243 -0.8845 41 1 5.3566 5.1184 -3.2508 42 1 4.1408 6.4097 -3.1005 43 1 4.5043 4.7495 -5.7136 44 1 2.7332 4.7380 -5.8915 45 1 2.6149 6.9896 -4.8596 46 1 4.3859 7.0011 -4.6817 47 1 3.6156 10.3048 -6.1142 48 1 4.7149 2.9564 -4.0934 49 1 3.0256 2.6526 -4.5650 50 1 3.5784 1.5870 -2.3802 51 1 2.3188 2.8326 -2.2041 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274041014.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:20 Heat of formation + Delta-G solvation = -136.956253 kcal Electronic energy + Delta-G solvation = -31550.074693 eV Core-core repulsion = 27448.485044 eV Total energy + Delta-G solvation = -4101.589649 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.94060 -41.08803 -39.23803 -38.06444 -37.26052 -36.03746 -34.74378 -32.74926 -32.32883 -31.86223 -30.32751 -28.39208 -27.22825 -25.86039 -25.15449 -24.19920 -23.26067 -22.60720 -21.63076 -21.28494 -19.80779 -19.00487 -18.64110 -18.04984 -17.61085 -17.28711 -16.68396 -16.67462 -16.54049 -15.97484 -15.82330 -15.47293 -15.37889 -15.12895 -14.76123 -14.52520 -14.32811 -14.24406 -13.93045 -13.76191 -13.58971 -13.41552 -13.32367 -13.26786 -13.16609 -13.04761 -12.83185 -12.80451 -12.78292 -12.49272 -12.43247 -12.23220 -12.07300 -11.90296 -11.51234 -11.48107 -11.44715 -11.21371 -11.03592 -10.70696 -10.51909 -9.76219 -9.15200 -8.20211 -6.30680 1.00187 1.39250 1.40888 1.42978 1.51817 1.58483 1.97810 2.40194 2.95140 3.07367 3.12797 3.16559 3.38412 3.64374 3.79486 3.81135 4.04066 4.10420 4.14815 4.25197 4.27684 4.37201 4.39231 4.42951 4.48048 4.50886 4.51579 4.57778 4.60052 4.68040 4.73386 4.80417 4.81637 4.88763 4.90872 4.97237 5.00956 5.04046 5.07989 5.18277 5.22590 5.43833 5.45242 5.50023 5.67516 5.77446 5.97959 6.07572 6.26850 6.33804 6.65608 6.84095 7.07130 7.37496 8.91651 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014752 B = 0.002951 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.574189 B = 9486.074517 C =10603.429621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 O -0.351 6.351 4 C 0.478 3.522 5 O -0.530 6.530 6 C -0.090 4.090 7 H 0.174 0.826 8 C 0.119 3.881 9 N -0.621 5.621 10 C 0.092 3.908 11 C 0.514 3.486 12 O -0.563 6.563 13 C -0.071 4.071 14 C -0.083 4.083 15 C 0.048 3.952 16 N -0.529 5.529 17 C 0.077 3.923 18 C 0.035 3.965 19 C -0.548 4.548 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.927 5.927 23 Si 0.964 3.036 24 H -0.269 1.269 25 H -0.279 1.279 26 H -0.269 1.269 27 C 0.046 3.954 28 C -0.088 4.088 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.058 0.942 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.003 0.997 44 H 0.065 0.935 45 H 0.003 0.997 46 H -0.001 1.001 47 H 0.265 0.735 48 H 0.031 0.969 49 H 0.074 0.926 50 H 0.054 0.946 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 -17.456 22.202 28.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.019 4.019 3 O -0.267 6.267 4 C 0.322 3.678 5 O -0.420 6.420 6 C -0.109 4.109 7 H 0.192 0.808 8 C -0.003 4.003 9 N -0.354 5.354 10 C -0.049 4.049 11 C 0.302 3.698 12 O -0.442 6.442 13 C -0.075 4.075 14 C -0.121 4.121 15 C -0.080 4.080 16 N -0.254 5.254 17 C -0.051 4.051 18 C -0.002 4.002 19 C -0.587 4.587 20 H 0.072 0.928 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.789 3.211 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.194 1.194 27 C -0.082 4.082 28 C -0.126 4.126 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.145 0.855 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.021 0.979 44 H 0.083 0.917 45 H 0.021 0.979 46 H 0.018 0.982 47 H 0.074 0.926 48 H 0.049 0.951 49 H 0.092 0.908 50 H 0.072 0.928 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.170 -17.589 21.875 28.153 hybrid contribution 1.312 -0.024 -1.638 2.099 sum -0.858 -17.612 20.238 26.842 Atomic orbital electron populations 1.21828 0.90600 1.04225 1.03851 1.23270 0.96964 0.79188 1.02445 1.86538 1.23400 1.33578 1.83205 1.23414 0.81039 0.92097 0.71219 1.90686 1.61128 1.43832 1.46330 1.22255 0.99265 0.92526 0.96818 0.80822 1.22348 0.83567 1.05712 0.88681 1.48303 1.12148 1.67714 1.07235 1.21683 0.79100 1.01465 1.02667 1.20956 0.89608 0.75522 0.83708 1.90679 1.70290 1.54150 1.29065 1.20955 0.92614 0.99210 0.94684 1.21494 1.05302 0.90000 0.95260 1.22166 0.93424 0.98999 0.93382 1.62095 1.52862 1.03259 1.07167 1.21978 0.97821 0.96850 0.88402 1.19017 0.95495 0.90116 0.95545 1.21606 1.50591 0.92364 0.94108 0.92808 1.25895 0.94624 0.97139 1.01667 1.70080 1.51061 1.02545 1.32975 0.85466 0.78644 0.77632 0.79404 1.19416 1.20443 1.19354 1.22179 0.99759 0.88599 0.97620 1.21434 1.00788 0.97231 0.93116 0.90717 0.91691 0.88489 0.92120 0.90653 0.85517 0.88192 0.92312 0.89250 0.90602 0.87094 0.88668 0.97211 0.90954 0.97860 0.91654 0.97878 0.98239 0.92645 0.95098 0.90774 0.92762 0.87854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 71.98 0.74 -0.68 16 2 C 0.05 0.79 6.19 71.98 0.45 1.23 16 3 O -0.35 -6.12 9.97 -51.40 -0.51 -6.63 16 4 C 0.48 9.27 4.90 71.24 0.35 9.62 16 5 O -0.53 -13.27 15.86 21.96 0.35 -12.92 16 6 C -0.09 -1.38 3.08 -10.62 -0.03 -1.41 16 7 H 0.17 1.34 7.87 -2.39 -0.02 1.33 16 8 C 0.12 1.56 6.56 86.85 0.57 2.13 16 9 N -0.62 -13.48 3.34 -842.80 -2.82 -16.30 16 10 C 0.09 1.65 11.15 127.77 1.42 3.08 16 11 C 0.51 15.37 6.33 87.71 0.56 15.93 16 12 O -0.56 -22.48 13.60 -3.04 -0.04 -22.52 16 13 C -0.07 -1.71 0.46 -52.83 -0.02 -1.73 16 14 C -0.08 -2.07 4.77 30.49 0.15 -1.92 16 15 C 0.05 1.83 4.64 86.36 0.40 2.23 16 16 N -0.53 -20.92 4.79 -895.90 -4.29 -25.21 16 17 C 0.08 3.63 5.21 86.30 0.45 4.08 16 18 C 0.04 1.97 4.22 29.85 0.13 2.09 16 19 C -0.55 -32.67 9.11 25.60 0.23 -32.44 16 20 H 0.05 3.13 7.74 -2.91 -0.02 3.10 16 21 C 0.01 0.30 5.46 84.65 0.46 0.76 16 22 N -0.93 -56.91 13.29 21.45 0.28 -56.62 16 23 Si 0.96 45.52 29.54 68.60 2.03 47.55 16 24 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 25 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 27 C 0.05 1.64 5.20 86.36 0.45 2.08 16 28 C -0.09 -2.40 3.86 30.49 0.12 -2.28 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.99 8.13 -2.39 -0.02 0.97 16 33 H 0.08 0.98 8.13 -2.39 -0.02 0.96 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.10 1.13 7.55 -2.39 -0.02 1.11 16 36 H 0.06 1.35 7.54 -2.39 -0.02 1.33 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.01 0.42 6.68 -2.39 -0.02 0.40 16 42 H 0.07 3.08 5.78 -2.39 -0.01 3.07 16 43 H 0.00 0.16 8.08 -2.39 -0.02 0.14 16 44 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.00 -0.04 6.20 -2.39 -0.01 -0.05 16 47 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 48 H 0.03 1.28 5.78 -2.39 -0.01 1.26 16 49 H 0.07 2.47 8.12 -2.39 -0.02 2.45 16 50 H 0.05 1.54 7.09 -2.39 -0.02 1.52 16 51 H 0.10 2.51 7.96 -2.39 -0.02 2.49 16 Total: -1.00 -80.66 395.50 2.32 -78.35 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.91 Total: 11.55 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 6.41 Total: 2.76 kcal Atomic # 7 Polarization: -91.31 SS G_CDS: -6.82 Total: -98.13 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -0.21 Total: -42.07 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -80.66 2.32 -78.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274041014.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.609 kcal (2) G-P(sol) polarization free energy of solvation -80.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds