Wall clock time and date at job start Tue Mar 31 2020 21:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42911 * 113.99920 * 2 1 4 4 C 1.52994 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47069 * 63.41820 * 4 3 2 6 6 C 1.46736 * 110.99785 * 177.08241 * 5 4 3 7 7 H 1.08994 * 109.41824 * 55.41095 * 6 5 4 8 8 C 1.53051 * 109.64126 * 175.42552 * 6 5 4 9 9 C 1.54222 * 109.52418 * 59.88360 * 8 6 5 10 10 C 1.53210 * 108.11046 * 359.25663 * 9 8 6 11 11 H 1.08995 * 109.66001 * 181.98729 * 10 9 8 12 12 C 1.53215 * 109.14039 * 61.85087 * 10 9 8 13 13 H 1.09006 * 109.56687 * 178.19769 * 12 10 9 14 14 O 1.42902 * 109.56543 * 57.84934 * 12 10 9 15 15 C 1.53058 * 109.64458 * 295.40044 * 6 5 4 16 16 C 1.46740 * 110.99872 * 52.17881 * 5 4 3 17 17 H 1.08994 * 109.41944 * 4.39346 * 16 5 4 18 18 C 1.50705 * 109.41579 * 244.58462 * 16 5 4 19 19 O 1.21281 * 119.99783 * 340.00441 * 18 16 5 20 20 N 1.34773 * 120.00044 * 159.99657 * 18 16 5 21 21 C 1.47066 * 136.05599 * 359.63594 * 20 18 16 22 22 C 1.53237 * 88.08293 * 207.19757 * 21 20 18 23 23 C 1.50699 * 114.32574 * 220.46653 * 22 21 20 24 24 H 1.08001 * 119.99865 * 93.76498 * 23 22 21 25 25 C 1.37875 * 120.00180 * 273.76000 * 23 22 21 26 26 N 1.31513 * 119.99873 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99830 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47295 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47301 * 119.99967 * 27 25 23 30 30 H 1.48504 * 109.46662 * 239.99806 * 27 25 23 31 31 C 1.47065 * 136.05793 * 179.97438 * 20 18 16 32 32 H 1.08997 * 109.46828 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46905 * 299.99542 * 1 2 3 34 34 H 1.09005 * 109.47271 * 60.00026 * 1 2 3 35 35 H 1.09000 * 109.46759 * 59.99770 * 3 2 1 36 36 H 1.09000 * 109.46922 * 300.00302 * 3 2 1 37 37 H 1.09000 * 109.47525 * 303.41602 * 4 3 2 38 38 H 1.09001 * 109.46713 * 183.41608 * 4 3 2 39 39 H 1.08999 * 109.52343 * 179.64399 * 8 6 5 40 40 H 1.08991 * 109.52580 * 299.84285 * 8 6 5 41 41 H 1.08998 * 109.50088 * 239.93672 * 9 8 6 42 42 H 1.09001 * 110.41838 * 119.10087 * 9 8 6 43 43 H 0.96696 * 113.99825 * 180.58005 * 14 12 10 44 44 H 1.09000 * 109.52295 * 60.15819 * 15 6 5 45 45 H 1.09001 * 109.52351 * 180.35238 * 15 6 5 46 46 H 1.09002 * 113.46793 * 321.93090 * 21 20 18 47 47 H 1.08998 * 113.46998 * 92.36865 * 21 20 18 48 48 H 1.09000 * 114.19402 * 87.72474 * 22 21 20 49 49 H 0.97004 * 120.00061 * 180.02562 * 26 25 23 50 50 H 1.08996 * 113.46907 * 267.62403 * 31 20 18 51 51 H 1.08998 * 113.46953 * 38.01350 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9751 0.5280 -1.2376 6 6 5.4392 0.4568 -1.3037 7 1 5.8184 -0.0424 -0.4121 8 6 5.8604 -0.3313 -2.5463 9 6 5.3228 0.3717 -3.8093 10 6 4.5359 1.6096 -3.3668 11 1 4.1139 2.1072 -4.2399 12 6 5.4788 2.5684 -2.6326 13 1 4.9331 3.4663 -2.3426 14 8 6.5651 2.9222 -3.4911 15 6 6.0203 1.8707 -1.3812 16 6 3.4098 1.1952 -2.4160 17 1 2.8526 2.0773 -2.1006 18 6 2.4819 0.2474 -3.1314 19 8 2.5721 -0.9473 -2.9428 20 7 1.5518 0.7273 -3.9805 21 6 1.1358 2.0558 -4.4546 22 6 -0.2628 1.4764 -4.6920 23 6 -0.9236 1.9494 -5.9611 24 1 -0.8337 1.3669 -6.8661 25 6 -1.6429 3.1256 -5.9669 26 7 -1.7528 3.8345 -4.8646 27 14 -2.4625 3.7115 -7.5399 28 1 -2.1904 2.7414 -8.6309 29 1 -3.9280 3.8170 -7.3249 30 1 -1.9200 5.0421 -7.9147 31 6 0.5024 0.1533 -4.8362 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6885 1.8464 0.8900 36 1 1.6886 1.8465 -0.8900 37 1 3.8526 0.5920 0.8586 38 1 3.9785 2.1787 0.0619 39 1 6.9482 -0.3777 -2.5969 40 1 5.4539 -1.3412 -2.4922 41 1 4.6628 -0.3065 -4.3502 42 1 6.1466 0.6747 -4.4556 43 1 7.2070 3.5215 -3.0864 44 1 5.7279 2.4337 -0.4948 45 1 7.1074 1.8152 -1.4365 46 1 1.1610 2.8211 -3.6789 47 1 1.6380 2.3667 -5.3707 48 1 -0.9184 1.5212 -3.8223 49 1 -2.2592 4.6619 -4.8685 50 1 0.8343 -0.0472 -5.8548 51 1 -0.0092 -0.6966 -4.3847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276896911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:30 Heat of formation + Delta-G solvation = -75.388161 kcal Electronic energy + Delta-G solvation = -32657.010298 eV Core-core repulsion = 28558.090442 eV Total energy + Delta-G solvation = -4098.919856 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.36211 -38.97831 -37.72511 -36.85362 -36.12023 -33.71923 -32.69379 -31.87771 -29.92356 -29.18641 -28.80556 -26.14485 -25.59616 -24.92233 -24.26537 -22.86303 -22.32112 -21.45327 -20.36715 -18.49857 -17.65193 -17.05815 -17.01312 -16.78228 -16.54043 -15.91711 -15.66120 -15.18990 -15.06582 -14.86411 -14.61823 -14.28648 -14.13686 -13.76942 -13.31468 -13.23560 -13.10945 -12.88032 -12.42107 -12.27065 -12.19747 -12.11688 -11.77073 -11.63857 -11.57051 -11.50359 -11.48898 -11.17220 -10.99211 -10.94106 -10.80042 -10.73047 -10.32640 -10.17878 -10.06511 -9.90054 -9.49781 -9.38005 -9.17046 -8.91538 -8.59144 -8.00225 -7.70365 -6.19235 -4.23877 3.21992 3.29066 3.31245 3.34747 3.40588 3.96273 4.02534 4.19796 4.33969 4.51376 4.55628 4.68155 4.86448 4.96427 5.07043 5.10800 5.14212 5.19224 5.25221 5.28683 5.35124 5.42164 5.50480 5.52480 5.56840 5.60201 5.68474 5.70834 5.76154 5.88840 5.96047 6.00352 6.08000 6.15890 6.17982 6.24207 6.35562 6.35974 6.45053 6.50541 6.60525 6.68930 6.84931 7.11394 7.16297 7.42862 7.48436 7.56280 7.79217 8.19569 8.70305 8.80525 9.05429 9.43063 10.90625 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.004045 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.800849 B = 6919.739565 C = 7966.462238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.365 6.365 3 C 0.056 3.944 4 C 0.057 3.943 5 N -0.498 5.498 6 C 0.095 3.905 7 H 0.087 0.913 8 C -0.106 4.106 9 C -0.105 4.105 10 C -0.087 4.087 11 H 0.088 0.912 12 C 0.113 3.887 13 H 0.054 0.946 14 O -0.559 6.559 15 C -0.188 4.188 16 C 0.081 3.919 17 H 0.079 0.921 18 C 0.548 3.452 19 O -0.527 6.527 20 N -0.651 5.651 21 C 0.100 3.900 22 C 0.035 3.965 23 C -0.514 4.514 24 H 0.064 0.936 25 C 0.068 3.932 26 N -0.888 5.888 27 Si 0.894 3.106 28 H -0.271 1.271 29 H -0.283 1.283 30 H -0.283 1.283 31 C 0.103 3.897 32 H 0.083 0.917 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.051 0.949 36 H 0.051 0.949 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.375 0.625 44 H 0.068 0.932 45 H 0.081 0.919 46 H 0.052 0.948 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.262 0.738 50 H 0.069 0.931 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.010 -0.188 9.838 17.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.283 6.283 3 C -0.022 4.022 4 C -0.071 4.071 5 N -0.221 5.221 6 C -0.013 4.013 7 H 0.105 0.895 8 C -0.143 4.143 9 C -0.143 4.143 10 C -0.107 4.107 11 H 0.106 0.894 12 C 0.054 3.946 13 H 0.072 0.928 14 O -0.364 6.364 15 C -0.228 4.228 16 C -0.031 4.031 17 H 0.097 0.903 18 C 0.335 3.665 19 O -0.403 6.403 20 N -0.387 5.387 21 C -0.023 4.023 22 C 0.016 3.984 23 C -0.552 4.552 24 H 0.082 0.918 25 C -0.135 4.135 26 N -0.525 5.525 27 Si 0.721 3.279 28 H -0.195 1.195 29 H -0.209 1.209 30 H -0.209 1.209 31 C -0.019 4.019 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.221 0.779 44 H 0.087 0.913 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.072 0.928 50 H 0.087 0.913 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 13.753 -1.812 9.778 16.972 hybrid contribution -0.140 2.155 -0.344 2.187 sum 13.613 0.344 9.434 16.566 Atomic orbital electron populations 1.22711 0.81434 1.02585 0.99722 1.88042 1.19042 1.26019 1.95183 1.22693 0.93143 0.86212 1.00113 1.22252 0.93865 0.97505 0.93465 1.61475 1.07948 1.52681 1.00029 1.21527 0.86522 0.93764 0.99523 0.89528 1.21709 0.99500 1.00058 0.93079 1.21645 0.99656 0.95347 0.97607 1.21314 0.94250 0.96800 0.98345 0.89367 1.21768 0.87739 0.95849 0.89244 0.92779 1.86544 1.37454 1.69293 1.43105 1.23125 1.02146 0.99091 0.98424 1.21466 0.94792 0.95515 0.91294 0.90286 1.19602 0.79070 0.88696 0.79113 1.90611 1.69841 1.15902 1.63932 1.49998 1.33822 1.12678 1.42222 1.23460 0.97690 0.84296 0.96878 1.20276 0.90698 0.88896 0.98524 1.20972 1.32218 1.06907 0.95136 0.91816 1.25011 0.95567 0.96585 0.96314 1.69957 1.40883 1.14926 1.26718 0.86506 0.79209 0.78712 0.83440 1.19528 1.20894 1.20941 1.23246 0.86389 0.99546 0.92707 0.89877 0.94793 0.93719 0.93103 0.93139 0.89512 0.93391 0.91859 0.90468 0.91553 0.90949 0.77855 0.91316 0.90085 0.92952 0.91081 0.91679 0.92786 0.91256 0.92716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -6.15 10.63 -35.23 -0.37 -6.53 16 3 C 0.06 0.78 5.72 37.15 0.21 0.99 16 4 C 0.06 0.70 5.15 -3.83 -0.02 0.68 16 5 N -0.50 -7.29 3.90 -220.24 -0.86 -8.15 16 6 C 0.10 1.15 2.93 -67.75 -0.20 0.95 16 7 H 0.09 0.94 8.13 -51.93 -0.42 0.52 16 8 C -0.11 -1.39 5.91 -26.07 -0.15 -1.54 16 9 C -0.10 -1.54 5.44 -25.98 -0.14 -1.68 16 10 C -0.09 -1.28 2.52 -90.35 -0.23 -1.50 16 11 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 12 C 0.11 1.30 3.46 -26.53 -0.09 1.21 16 13 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 14 O -0.56 -6.12 12.39 -35.23 -0.44 -6.55 16 15 C -0.19 -1.83 5.26 -26.62 -0.14 -1.97 16 16 C 0.08 1.30 1.34 -68.90 -0.09 1.21 16 17 H 0.08 1.26 5.78 -51.93 -0.30 0.96 16 18 C 0.55 10.94 6.15 -10.98 -0.07 10.87 16 19 O -0.53 -12.14 17.10 5.56 0.10 -12.05 16 20 N -0.65 -13.39 3.69 -185.38 -0.68 -14.07 16 21 C 0.10 2.09 7.98 -8.64 -0.07 2.02 16 22 C 0.04 0.82 3.77 -91.38 -0.34 0.48 16 23 C -0.51 -13.02 8.82 -34.44 -0.30 -13.32 16 24 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 25 C 0.07 1.76 5.46 -17.82 -0.10 1.67 16 26 N -0.89 -23.84 13.26 55.43 0.74 -23.11 16 27 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 28 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 29 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 30 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 31 C 0.10 2.20 8.19 -8.50 -0.07 2.13 16 32 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.79 5.96 -51.93 -0.31 0.48 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.49 6.30 -51.93 -0.33 0.16 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.07 1.14 7.14 -51.93 -0.37 0.77 16 42 H 0.07 1.02 7.57 -51.93 -0.39 0.62 16 43 H 0.37 2.39 9.08 45.56 0.41 2.81 16 44 H 0.07 0.59 6.48 -51.93 -0.34 0.25 16 45 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 46 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 48 H 0.07 1.65 8.11 -51.93 -0.42 1.23 16 49 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 50 H 0.07 1.43 8.10 -51.93 -0.42 1.01 16 51 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 395.26 15.07 5.96 5.96 Total: -1.00 -30.92 395.26 -9.19 -40.11 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.91 Total: 5.66 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -0.69 Total: 3.77 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: -0.81 Total: -45.32 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.72 Total: -25.13 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.92 -9.19 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276896911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.280 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds