Wall clock time and date at job start Tue Mar 31 2020 21:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42911 * 113.99920 * 2 1 4 4 C 1.52994 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.46900 * 109.47069 * 63.41820 * 4 3 2 6 6 C 1.46736 * 110.99785 * 177.08241 * 5 4 3 7 7 H 1.08994 * 109.41824 * 55.41095 * 6 5 4 8 8 C 1.53051 * 109.64126 * 175.42552 * 6 5 4 9 9 C 1.54222 * 109.52418 * 59.88360 * 8 6 5 10 10 C 1.53210 * 108.11046 * 359.25663 * 9 8 6 11 11 H 1.08995 * 109.66001 * 181.98729 * 10 9 8 12 12 C 1.53215 * 109.14039 * 61.85087 * 10 9 8 13 13 H 1.09006 * 109.56687 * 178.19769 * 12 10 9 14 14 O 1.42902 * 109.56543 * 57.84934 * 12 10 9 15 15 C 1.53058 * 109.64458 * 295.40044 * 6 5 4 16 16 C 1.46740 * 110.99872 * 52.17881 * 5 4 3 17 17 H 1.08994 * 109.41944 * 4.39346 * 16 5 4 18 18 C 1.50705 * 109.41579 * 244.58462 * 16 5 4 19 19 O 1.21281 * 119.99783 * 340.00441 * 18 16 5 20 20 N 1.34773 * 120.00044 * 159.99657 * 18 16 5 21 21 C 1.47066 * 136.05599 * 359.63594 * 20 18 16 22 22 C 1.53237 * 88.08293 * 207.19757 * 21 20 18 23 23 C 1.50699 * 114.32574 * 220.46653 * 22 21 20 24 24 H 1.08001 * 119.99865 * 93.76498 * 23 22 21 25 25 C 1.37875 * 120.00180 * 273.76000 * 23 22 21 26 26 N 1.31513 * 119.99873 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99830 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47295 * 359.97438 * 27 25 23 29 29 H 1.48495 * 109.47301 * 119.99967 * 27 25 23 30 30 H 1.48504 * 109.46662 * 239.99806 * 27 25 23 31 31 C 1.47065 * 136.05793 * 179.97438 * 20 18 16 32 32 H 1.08997 * 109.46828 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46905 * 299.99542 * 1 2 3 34 34 H 1.09005 * 109.47271 * 60.00026 * 1 2 3 35 35 H 1.09000 * 109.46759 * 59.99770 * 3 2 1 36 36 H 1.09000 * 109.46922 * 300.00302 * 3 2 1 37 37 H 1.09000 * 109.47525 * 303.41602 * 4 3 2 38 38 H 1.09001 * 109.46713 * 183.41608 * 4 3 2 39 39 H 1.08999 * 109.52343 * 179.64399 * 8 6 5 40 40 H 1.08991 * 109.52580 * 299.84285 * 8 6 5 41 41 H 1.08998 * 109.50088 * 239.93672 * 9 8 6 42 42 H 1.09001 * 110.41838 * 119.10087 * 9 8 6 43 43 H 0.96696 * 113.99825 * 180.58005 * 14 12 10 44 44 H 1.09000 * 109.52295 * 60.15819 * 15 6 5 45 45 H 1.09001 * 109.52351 * 180.35238 * 15 6 5 46 46 H 1.09002 * 113.46793 * 321.93090 * 21 20 18 47 47 H 1.08998 * 113.46998 * 92.36865 * 21 20 18 48 48 H 1.09000 * 114.19402 * 87.72474 * 22 21 20 49 49 H 0.97004 * 120.00061 * 180.02562 * 26 25 23 50 50 H 1.08996 * 113.46907 * 267.62403 * 31 20 18 51 51 H 1.08998 * 113.46953 * 38.01350 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9751 0.5280 -1.2376 6 6 5.4392 0.4568 -1.3037 7 1 5.8184 -0.0424 -0.4121 8 6 5.8604 -0.3313 -2.5463 9 6 5.3228 0.3717 -3.8093 10 6 4.5359 1.6096 -3.3668 11 1 4.1139 2.1072 -4.2399 12 6 5.4788 2.5684 -2.6326 13 1 4.9331 3.4663 -2.3426 14 8 6.5651 2.9222 -3.4911 15 6 6.0203 1.8707 -1.3812 16 6 3.4098 1.1952 -2.4160 17 1 2.8526 2.0773 -2.1006 18 6 2.4819 0.2474 -3.1314 19 8 2.5721 -0.9473 -2.9428 20 7 1.5518 0.7273 -3.9805 21 6 1.1358 2.0558 -4.4546 22 6 -0.2628 1.4764 -4.6920 23 6 -0.9236 1.9494 -5.9611 24 1 -0.8337 1.3669 -6.8661 25 6 -1.6429 3.1256 -5.9669 26 7 -1.7528 3.8345 -4.8646 27 14 -2.4625 3.7115 -7.5399 28 1 -2.1904 2.7414 -8.6309 29 1 -3.9280 3.8170 -7.3249 30 1 -1.9200 5.0421 -7.9147 31 6 0.5024 0.1533 -4.8362 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3634 0.5138 -0.8900 35 1 1.6885 1.8464 0.8900 36 1 1.6886 1.8465 -0.8900 37 1 3.8526 0.5920 0.8586 38 1 3.9785 2.1787 0.0619 39 1 6.9482 -0.3777 -2.5969 40 1 5.4539 -1.3412 -2.4922 41 1 4.6628 -0.3065 -4.3502 42 1 6.1466 0.6747 -4.4556 43 1 7.2070 3.5215 -3.0864 44 1 5.7279 2.4337 -0.4948 45 1 7.1074 1.8152 -1.4365 46 1 1.1610 2.8211 -3.6789 47 1 1.6380 2.3667 -5.3707 48 1 -0.9184 1.5212 -3.8223 49 1 -2.2592 4.6619 -4.8685 50 1 0.8343 -0.0472 -5.8548 51 1 -0.0092 -0.6966 -4.3847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276896911.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:43:28 Heat of formation + Delta-G solvation = -98.620553 kcal Electronic energy + Delta-G solvation = -32658.017730 eV Core-core repulsion = 28558.090442 eV Total energy + Delta-G solvation = -4099.927288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.48914 -40.61999 -38.87242 -38.42090 -37.17796 -34.77756 -34.64491 -33.07115 -30.93704 -30.65152 -30.05860 -27.52946 -27.07219 -26.71597 -25.68534 -23.87637 -23.30962 -22.63656 -21.98643 -20.01734 -18.86584 -18.53804 -18.25097 -18.09254 -17.88274 -17.11713 -16.93032 -16.58891 -16.37354 -16.20265 -15.98792 -15.88961 -15.38253 -14.87992 -14.74531 -14.39828 -14.23383 -14.10537 -13.91814 -13.77426 -13.38773 -13.27943 -13.25216 -13.10717 -12.81847 -12.74519 -12.71430 -12.63500 -12.56422 -12.46112 -12.18218 -12.08607 -11.77313 -11.36305 -11.28412 -11.06633 -11.05195 -10.79541 -10.62166 -10.58096 -10.46656 -9.46366 -9.09698 -8.17565 -6.28263 1.44736 1.48373 1.58931 1.78581 1.95078 2.45089 2.80318 2.95630 3.12751 3.16127 3.50934 3.55693 3.68901 3.75199 3.90115 3.96404 4.11282 4.12763 4.23197 4.25813 4.32200 4.35933 4.37287 4.41116 4.43248 4.45867 4.48801 4.55647 4.58066 4.60700 4.67414 4.69963 4.78736 4.81252 4.85833 4.93622 5.00336 5.03483 5.08728 5.11098 5.18279 5.23124 5.34786 5.58148 5.80311 5.98805 6.16027 6.23256 6.31677 6.79878 6.92515 7.03269 7.39151 7.43969 8.92612 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.004045 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.800849 B = 6919.739565 C = 7966.462238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.059 3.941 5 N -0.523 5.523 6 C 0.092 3.908 7 H 0.106 0.894 8 C -0.103 4.103 9 C -0.101 4.101 10 C -0.091 4.091 11 H 0.065 0.935 12 C 0.120 3.880 13 H 0.063 0.937 14 O -0.573 6.573 15 C -0.175 4.175 16 C 0.095 3.905 17 H 0.080 0.920 18 C 0.544 3.456 19 O -0.563 6.563 20 N -0.653 5.653 21 C 0.118 3.882 22 C 0.029 3.971 23 C -0.527 4.527 24 H 0.064 0.936 25 C 0.024 3.976 26 N -0.917 5.917 27 Si 0.957 3.043 28 H -0.266 1.266 29 H -0.282 1.282 30 H -0.279 1.279 31 C 0.107 3.893 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.017 0.983 35 H 0.079 0.921 36 H 0.027 0.973 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.048 0.952 41 H 0.027 0.973 42 H 0.078 0.922 43 H 0.397 0.603 44 H 0.091 0.909 45 H 0.104 0.896 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.265 0.735 50 H 0.076 0.924 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.147 1.330 11.029 19.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.028 4.028 4 C -0.068 4.068 5 N -0.247 5.247 6 C -0.016 4.016 7 H 0.124 0.876 8 C -0.140 4.140 9 C -0.139 4.139 10 C -0.110 4.110 11 H 0.084 0.916 12 C 0.061 3.939 13 H 0.081 0.919 14 O -0.382 6.382 15 C -0.214 4.214 16 C -0.017 4.017 17 H 0.098 0.902 18 C 0.334 3.666 19 O -0.441 6.441 20 N -0.389 5.389 21 C -0.005 4.005 22 C 0.010 3.990 23 C -0.566 4.566 24 H 0.082 0.918 25 C -0.176 4.176 26 N -0.555 5.555 27 Si 0.782 3.218 28 H -0.190 1.190 29 H -0.208 1.208 30 H -0.205 1.205 31 C -0.016 4.016 32 H 0.103 0.897 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.096 0.904 36 H 0.046 0.954 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.108 0.892 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.097 0.903 43 H 0.247 0.753 44 H 0.109 0.891 45 H 0.122 0.878 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.055 0.945 49 H 0.074 0.926 50 H 0.094 0.906 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 15.918 -0.280 10.982 19.341 hybrid contribution -0.816 1.596 -0.714 1.930 sum 15.102 1.317 10.268 18.310 Atomic orbital electron populations 1.22715 0.81043 1.02788 0.99686 1.88001 1.19716 1.28003 1.95288 1.22913 0.94477 0.85088 1.00276 1.22367 0.92506 0.99307 0.92624 1.61372 1.09795 1.53449 1.00075 1.21656 0.85013 0.95491 0.99422 0.87595 1.21699 1.00868 0.98478 0.92993 1.21568 0.99080 0.94900 0.98311 1.21294 0.94628 0.97413 0.97703 0.91615 1.21612 0.87590 0.95373 0.89325 0.91939 1.86494 1.37788 1.70146 1.43736 1.23040 1.03298 0.96992 0.98078 1.21220 0.94391 0.94058 0.92002 0.90248 1.20512 0.78779 0.89064 0.78280 1.90580 1.70802 1.17711 1.64958 1.50053 1.34111 1.12239 1.42479 1.23160 0.96039 0.84324 0.96959 1.20129 0.91318 0.90589 0.96996 1.21226 1.32584 1.07119 0.95629 0.91817 1.25715 0.96101 0.96679 0.99118 1.70056 1.41666 1.15347 1.28466 0.85526 0.78039 0.78255 0.79968 1.19009 1.20802 1.20465 1.23125 0.86639 0.98513 0.93337 0.89687 0.92005 0.96440 0.90351 0.95441 0.88137 0.90217 0.89203 0.93342 0.95410 0.90318 0.75270 0.89066 0.87764 0.92840 0.90804 0.94464 0.92633 0.90562 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 11.01 113.37 1.25 2.29 16 2 O -0.39 -13.19 10.63 -148.98 -1.58 -14.78 16 3 C 0.05 1.32 5.72 71.98 0.41 1.73 16 4 C 0.06 1.29 5.15 86.30 0.44 1.73 16 5 N -0.52 -14.53 3.90 -850.70 -3.31 -17.85 16 6 C 0.09 1.95 2.93 44.98 0.13 2.08 16 7 H 0.11 1.89 8.13 -2.39 -0.02 1.87 16 8 C -0.10 -2.56 5.91 31.03 0.18 -2.38 16 9 C -0.10 -2.96 5.44 31.08 0.17 -2.80 16 10 C -0.09 -2.59 2.52 -10.62 -0.03 -2.62 16 11 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 12 C 0.12 2.40 3.46 30.72 0.11 2.50 16 13 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 14 O -0.57 -10.69 12.39 -148.98 -1.85 -12.53 16 15 C -0.18 -2.61 5.26 30.67 0.16 -2.44 16 16 C 0.10 3.04 1.34 44.23 0.06 3.10 16 17 H 0.08 2.51 5.78 -2.39 -0.01 2.50 16 18 C 0.54 22.53 6.15 87.66 0.54 23.07 16 19 O -0.56 -27.06 17.10 -3.03 -0.05 -27.11 16 20 N -0.65 -28.04 3.69 -858.81 -3.17 -31.21 16 21 C 0.12 5.12 7.98 83.09 0.66 5.79 16 22 C 0.03 1.41 3.77 -11.29 -0.04 1.36 16 23 C -0.53 -27.24 8.82 25.60 0.23 -27.01 16 24 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 25 C 0.02 1.25 5.46 84.65 0.46 1.72 16 26 N -0.92 -49.96 13.26 21.45 0.28 -49.68 16 27 Si 0.96 41.05 29.54 68.60 2.03 43.07 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 29 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 30 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 31 C 0.11 4.75 8.19 83.19 0.68 5.43 16 32 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.03 0.86 5.96 -2.39 -0.01 0.85 16 37 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.08 1.26 6.30 -2.39 -0.02 1.25 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.00 7.14 -2.39 -0.02 0.98 16 42 H 0.08 2.16 7.57 -2.39 -0.02 2.15 16 43 H 0.40 3.43 9.08 -74.06 -0.67 2.75 16 44 H 0.09 1.02 6.48 -2.39 -0.02 1.01 16 45 H 0.10 1.15 7.91 -2.39 -0.02 1.13 16 46 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 47 H 0.07 3.16 8.10 -2.39 -0.02 3.14 16 48 H 0.04 2.00 8.11 -2.39 -0.02 1.98 16 49 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 50 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 51 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -69.33 395.26 -1.99 -71.32 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.25 Total: 25.21 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 5.42 Total: 13.55 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -6.20 Total: -98.73 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -3.48 Total: -54.42 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.07 kcal Total: -69.33 -1.99 -71.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276896911.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.302 kcal (2) G-P(sol) polarization free energy of solvation -69.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds