Wall clock time and date at job start Tue Mar 31 2020 21:42:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47292 * 64.99932 * 4 3 2 6 6 C 1.47997 * 111.00419 * 170.00077 * 5 4 3 7 7 C 1.53904 * 106.85937 * 211.06742 * 6 5 4 8 8 H 1.09005 * 112.95236 * 129.96098 * 7 6 5 9 9 C 1.55120 * 108.60519 * 256.18463 * 7 6 5 10 10 C 1.54956 * 101.13345 * 78.35457 * 9 7 6 11 11 H 1.08996 * 110.40318 * 279.13385 * 10 9 7 12 12 C 1.52998 * 110.40354 * 156.72003 * 10 9 7 13 13 C 1.50696 * 109.47461 * 175.00205 * 12 10 9 14 14 O 1.21284 * 120.00095 * 359.97438 * 13 12 10 15 15 N 1.34781 * 120.00001 * 180.02562 * 13 12 10 16 16 C 1.47065 * 136.05855 * 359.62440 * 15 13 12 17 17 C 1.53236 * 88.08445 * 207.20546 * 16 15 13 18 18 C 1.50691 * 114.32844 * 220.47295 * 17 16 15 19 19 H 1.07999 * 120.00491 * 93.76158 * 18 17 16 20 20 C 1.37883 * 119.99658 * 273.76062 * 18 17 16 21 21 N 1.31514 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99833 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47306 * 89.99757 * 22 20 18 24 24 H 1.48498 * 109.47013 * 209.99806 * 22 20 18 25 25 H 1.48499 * 109.47049 * 329.99540 * 22 20 18 26 26 C 1.47066 * 136.05518 * 180.02562 * 15 13 12 27 27 O 1.43747 * 104.65227 * 37.92600 * 10 9 7 28 28 C 1.43117 * 109.71690 * 331.37930 * 27 10 9 29 29 H 1.08999 * 111.89299 * 130.47752 * 28 27 10 30 30 C 1.48564 * 111.00037 * 53.17731 * 5 4 3 31 31 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 32 32 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 34 34 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 35 35 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 36 36 H 1.09000 * 109.47569 * 185.00181 * 4 3 2 37 37 H 1.09008 * 109.47275 * 304.99847 * 4 3 2 38 38 H 1.09003 * 109.98227 * 330.41950 * 6 5 4 39 39 H 1.09004 * 109.98513 * 91.67218 * 6 5 4 40 40 H 1.08994 * 111.08923 * 196.32013 * 9 7 6 41 41 H 1.09000 * 111.09155 * 320.38838 * 9 7 6 42 42 H 1.09005 * 109.47200 * 295.00100 * 12 10 9 43 43 H 1.09002 * 109.47026 * 54.99917 * 12 10 9 44 44 H 1.09001 * 113.46943 * 321.94201 * 16 15 13 45 45 H 1.08997 * 113.46448 * 92.37986 * 16 15 13 46 46 H 1.09007 * 114.01537 * 87.71534 * 17 16 15 47 47 H 0.97004 * 119.99886 * 180.02562 * 21 20 18 48 48 H 1.09000 * 113.46403 * 267.62202 * 26 15 13 49 49 H 1.08999 * 113.47020 * 38.00555 * 26 15 13 50 50 H 1.09003 * 110.65340 * 279.34026 * 30 5 4 51 51 H 1.09003 * 110.64790 * 42.41846 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5623 -1.2542 6 6 5.4487 0.6442 -1.3972 7 6 5.7461 0.7371 -2.9044 8 1 6.4211 1.5556 -3.1548 9 6 6.2579 -0.6431 -3.3938 10 6 4.9292 -1.4326 -3.5051 11 1 4.6211 -1.7979 -2.5255 12 6 5.0812 -2.5968 -4.4861 13 6 3.8199 -3.4215 -4.4863 14 8 2.8910 -3.1091 -3.7718 15 7 3.7244 -4.5068 -5.2798 16 6 4.5915 -5.1852 -6.2548 17 6 3.3244 -5.6925 -6.9514 18 6 3.4071 -7.1196 -7.4281 19 1 3.0458 -7.9206 -6.8002 20 6 3.9439 -7.4029 -8.6662 21 7 4.3833 -6.4275 -9.4311 22 14 4.0458 -9.1719 -9.2575 23 1 2.8032 -9.5207 -9.9922 24 1 5.2144 -9.3254 -10.1608 25 1 4.2007 -10.0760 -8.0897 26 6 2.7046 -5.5296 -5.5568 27 8 3.9791 -0.4768 -4.0051 28 6 4.3537 0.8400 -3.5878 29 1 4.3574 1.5443 -4.4197 30 6 3.4275 1.2848 -2.4299 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 1.6885 1.8464 0.8900 36 1 3.9784 2.1766 0.0902 37 1 3.8508 0.5686 0.8428 38 1 5.8235 1.5322 -0.8882 39 1 5.9139 -0.2486 -0.9794 40 1 6.7464 -0.5585 -4.3644 41 1 6.9237 -1.0973 -2.6599 42 1 5.2603 -2.2067 -5.4881 43 1 5.9226 -3.2199 -4.1830 44 1 5.1765 -4.4988 -6.8670 45 1 5.1953 -5.9810 -5.8187 46 1 2.9255 -5.0081 -7.7002 47 1 4.7607 -6.6267 -10.3023 48 1 2.8004 -6.4181 -4.9327 49 1 1.6885 -5.1355 -5.5758 50 1 2.3988 0.9796 -2.6217 51 1 3.4883 2.3630 -2.2815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276897865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:24 Heat of formation + Delta-G solvation = -73.295281 kcal Electronic energy + Delta-G solvation = -30344.068985 eV Core-core repulsion = 26245.239883 eV Total energy + Delta-G solvation = -4098.829102 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.78352 -39.24432 -38.18488 -37.05664 -36.22211 -32.80570 -32.62759 -32.13254 -29.81326 -28.78437 -28.34501 -26.45730 -25.82063 -24.86881 -24.58346 -23.25202 -21.28622 -20.72815 -20.59056 -20.03464 -18.00872 -17.00548 -16.82857 -16.74928 -16.47373 -16.13405 -15.55017 -15.22028 -15.05129 -14.91306 -14.69647 -14.62144 -14.34503 -13.80626 -13.56924 -13.41655 -13.17794 -12.84122 -12.58874 -12.35693 -12.13183 -11.99653 -11.83531 -11.69572 -11.57324 -11.44701 -11.37214 -11.16768 -11.09136 -10.97589 -10.87340 -10.84708 -10.80387 -10.74581 -10.27339 -9.75433 -9.48069 -9.29138 -9.11153 -8.81197 -8.53234 -8.52490 -7.68762 -6.13853 -4.18961 3.26706 3.33948 3.36563 3.41109 3.60250 3.68729 3.76647 3.87723 4.20676 4.33367 4.37086 4.70979 4.73965 4.88721 4.91090 4.97366 5.05429 5.12343 5.15534 5.17455 5.18884 5.25506 5.29268 5.32650 5.39742 5.46025 5.55973 5.61005 5.62855 5.63922 5.69951 5.78205 5.81188 5.89047 5.97129 6.15741 6.29165 6.38852 6.40796 6.56180 6.66626 6.69944 6.78180 6.79656 6.93657 7.10622 7.29479 7.62332 7.84766 8.25012 8.72644 8.85167 8.99373 9.47486 10.95961 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002344 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.252286 B =11940.961068 C =12992.678374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.369 6.369 3 C 0.062 3.938 4 C 0.048 3.952 5 N -0.496 5.496 6 C 0.039 3.961 7 C -0.132 4.132 8 H 0.099 0.901 9 C -0.146 4.146 10 C 0.108 3.892 11 H 0.087 0.913 12 C -0.134 4.134 13 C 0.532 3.468 14 O -0.547 6.547 15 N -0.649 5.649 16 C 0.099 3.901 17 C 0.033 3.967 18 C -0.515 4.515 19 H 0.063 0.937 20 C 0.067 3.933 21 N -0.887 5.887 22 Si 0.895 3.105 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.101 3.899 27 O -0.346 6.346 28 C 0.081 3.919 29 H 0.098 0.902 30 C 0.019 3.981 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.035 0.965 34 H 0.049 0.951 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.263 0.737 48 H 0.070 0.930 49 H 0.055 0.945 50 H 0.093 0.907 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 18.710 16.172 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.287 6.287 3 C -0.016 4.016 4 C -0.080 4.080 5 N -0.220 5.220 6 C -0.089 4.089 7 C -0.151 4.151 8 H 0.117 0.883 9 C -0.184 4.184 10 C 0.050 3.950 11 H 0.105 0.895 12 C -0.174 4.174 13 C 0.321 3.679 14 O -0.425 6.425 15 N -0.384 5.384 16 C -0.023 4.023 17 C 0.014 3.986 18 C -0.554 4.554 19 H 0.081 0.919 20 C -0.136 4.136 21 N -0.524 5.524 22 Si 0.723 3.277 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.022 4.022 27 O -0.264 6.264 28 C 0.022 3.978 29 H 0.116 0.884 30 C -0.109 4.109 31 H 0.058 0.942 32 H 0.105 0.895 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.117 0.883 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.088 0.912 49 H 0.073 0.927 50 H 0.111 0.889 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.668 18.332 16.435 24.765 hybrid contribution 0.506 0.282 -0.231 0.624 sum 3.175 18.614 16.204 24.883 Atomic orbital electron populations 1.22733 0.81451 1.03000 0.99309 1.88071 1.19090 1.26426 1.95157 1.22575 0.93297 0.85854 0.99841 1.22332 0.93887 0.97669 0.94106 1.64983 1.05433 1.50505 1.01070 1.23013 0.89501 1.01228 0.95187 1.23470 0.97478 0.98786 0.95375 0.88287 1.23400 0.98246 0.94457 1.02295 1.22687 0.86365 0.88520 0.97394 0.89510 1.21733 0.97312 0.96403 1.01922 1.19940 0.89051 0.80251 0.78637 1.90691 1.40261 1.70228 1.41348 1.49996 1.21798 1.25013 1.41563 1.23487 0.97609 0.93649 0.87596 1.20288 0.90549 0.97551 0.90184 1.20928 1.41245 0.91300 1.01879 0.91881 1.25033 0.94813 0.97369 0.96370 1.69958 1.40292 1.31511 1.10616 0.86546 0.77683 0.84733 0.78776 1.20515 1.21190 1.19717 1.23268 0.92354 0.88392 0.98148 1.88569 1.49439 1.13823 1.74581 1.23451 0.91947 0.87284 0.95168 0.88420 1.23701 1.01163 0.95337 0.90690 0.94231 0.89457 0.94663 0.93244 0.93316 0.93478 0.89677 0.93902 0.89791 0.90265 0.89814 0.88714 0.88342 0.92408 0.91013 0.91511 0.92701 0.91179 0.92676 0.88860 0.93624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.37 -4.89 10.65 -35.23 -0.38 -5.26 16 3 C 0.06 0.60 5.76 37.16 0.21 0.82 16 4 C 0.05 0.46 5.43 -3.83 -0.02 0.44 16 5 N -0.50 -5.80 5.18 -230.48 -1.19 -6.99 16 6 C 0.04 0.37 5.78 -2.75 -0.02 0.35 16 7 C -0.13 -1.24 4.24 -87.72 -0.37 -1.61 16 8 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 9 C -0.15 -1.51 5.90 -24.58 -0.15 -1.66 16 10 C 0.11 1.60 2.37 -25.70 -0.06 1.54 16 11 H 0.09 1.49 7.81 -51.93 -0.41 1.08 16 12 C -0.13 -2.13 5.28 -27.89 -0.15 -2.28 16 13 C 0.53 11.14 8.01 -10.99 -0.09 11.05 16 14 O -0.55 -13.27 16.39 -0.94 -0.02 -13.29 16 15 N -0.65 -13.96 3.69 -185.41 -0.68 -14.64 16 16 C 0.10 2.15 7.98 -8.64 -0.07 2.08 16 17 C 0.03 0.81 3.77 -91.41 -0.34 0.47 16 18 C -0.52 -13.38 8.83 -34.44 -0.30 -13.69 16 19 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 20 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 21 N -0.89 -24.45 13.26 55.43 0.74 -23.71 16 22 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 C 0.10 2.23 8.18 -8.52 -0.07 2.16 16 27 O -0.35 -5.70 10.26 -41.73 -0.43 -6.13 16 28 C 0.08 0.96 4.62 -24.48 -0.11 0.84 16 29 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 30 C 0.02 0.22 4.76 -1.95 -0.01 0.21 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.47 6.51 -51.93 -0.34 0.13 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.05 0.35 7.81 -51.93 -0.41 -0.06 16 37 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.04 0.33 7.61 -51.93 -0.40 -0.06 16 39 H 0.08 0.82 7.39 -51.93 -0.38 0.43 16 40 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 41 H 0.08 0.74 7.68 -51.93 -0.40 0.34 16 42 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 43 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 45 H 0.07 1.51 8.10 -51.93 -0.42 1.09 16 46 H 0.07 1.77 8.11 -51.93 -0.42 1.35 16 47 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 49 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 50 H 0.09 1.27 7.49 -51.93 -0.39 0.88 16 51 H 0.05 0.41 8.03 -51.93 -0.42 -0.01 16 LS Contribution 406.06 15.07 6.12 6.12 Total: -1.00 -32.67 406.06 -10.40 -43.08 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -9.01 Total: 1.73 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: -0.53 Total: 3.83 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: -1.14 Total: -45.34 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.82 Total: -24.68 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.67 -10.40 -43.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276897865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.219 kcal (2) G-P(sol) polarization free energy of solvation -32.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds