Wall clock time and date at job start Tue Mar 31 2020 21:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.52998 * 109.47084 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47292 * 64.99932 * 4 3 2 6 6 C 1.47997 * 111.00419 * 170.00077 * 5 4 3 7 7 C 1.53904 * 106.85937 * 211.06742 * 6 5 4 8 8 H 1.09005 * 112.95236 * 129.96098 * 7 6 5 9 9 C 1.55120 * 108.60519 * 256.18463 * 7 6 5 10 10 C 1.54956 * 101.13345 * 78.35457 * 9 7 6 11 11 H 1.08996 * 110.40318 * 279.13385 * 10 9 7 12 12 C 1.52998 * 110.40354 * 156.72003 * 10 9 7 13 13 C 1.50696 * 109.47461 * 175.00205 * 12 10 9 14 14 O 1.21284 * 120.00095 * 359.97438 * 13 12 10 15 15 N 1.34781 * 120.00001 * 180.02562 * 13 12 10 16 16 C 1.47065 * 136.05855 * 359.62440 * 15 13 12 17 17 C 1.53236 * 88.08445 * 207.20546 * 16 15 13 18 18 C 1.50691 * 114.32844 * 220.47295 * 17 16 15 19 19 H 1.07999 * 120.00491 * 93.76158 * 18 17 16 20 20 C 1.37883 * 119.99658 * 273.76062 * 18 17 16 21 21 N 1.31514 * 120.00078 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99833 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47306 * 89.99757 * 22 20 18 24 24 H 1.48498 * 109.47013 * 209.99806 * 22 20 18 25 25 H 1.48499 * 109.47049 * 329.99540 * 22 20 18 26 26 C 1.47066 * 136.05518 * 180.02562 * 15 13 12 27 27 O 1.43747 * 104.65227 * 37.92600 * 10 9 7 28 28 C 1.43117 * 109.71690 * 331.37930 * 27 10 9 29 29 H 1.08999 * 111.89299 * 130.47752 * 28 27 10 30 30 C 1.48564 * 111.00037 * 53.17731 * 5 4 3 31 31 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 32 32 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 34 34 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 35 35 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 36 36 H 1.09000 * 109.47569 * 185.00181 * 4 3 2 37 37 H 1.09008 * 109.47275 * 304.99847 * 4 3 2 38 38 H 1.09003 * 109.98227 * 330.41950 * 6 5 4 39 39 H 1.09004 * 109.98513 * 91.67218 * 6 5 4 40 40 H 1.08994 * 111.08923 * 196.32013 * 9 7 6 41 41 H 1.09000 * 111.09155 * 320.38838 * 9 7 6 42 42 H 1.09005 * 109.47200 * 295.00100 * 12 10 9 43 43 H 1.09002 * 109.47026 * 54.99917 * 12 10 9 44 44 H 1.09001 * 113.46943 * 321.94201 * 16 15 13 45 45 H 1.08997 * 113.46448 * 92.37986 * 16 15 13 46 46 H 1.09007 * 114.01537 * 87.71534 * 17 16 15 47 47 H 0.97004 * 119.99886 * 180.02562 * 21 20 18 48 48 H 1.09000 * 113.46403 * 267.62202 * 26 15 13 49 49 H 1.08999 * 113.47020 * 38.00555 * 26 15 13 50 50 H 1.09003 * 110.65340 * 279.34026 * 30 5 4 51 51 H 1.09003 * 110.64790 * 42.41846 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5623 -1.2542 6 6 5.4487 0.6442 -1.3972 7 6 5.7461 0.7371 -2.9044 8 1 6.4211 1.5556 -3.1548 9 6 6.2579 -0.6431 -3.3938 10 6 4.9292 -1.4326 -3.5051 11 1 4.6211 -1.7979 -2.5255 12 6 5.0812 -2.5968 -4.4861 13 6 3.8199 -3.4215 -4.4863 14 8 2.8910 -3.1091 -3.7718 15 7 3.7244 -4.5068 -5.2798 16 6 4.5915 -5.1852 -6.2548 17 6 3.3244 -5.6925 -6.9514 18 6 3.4071 -7.1196 -7.4281 19 1 3.0458 -7.9206 -6.8002 20 6 3.9439 -7.4029 -8.6662 21 7 4.3833 -6.4275 -9.4311 22 14 4.0458 -9.1719 -9.2575 23 1 2.8032 -9.5207 -9.9922 24 1 5.2144 -9.3254 -10.1608 25 1 4.2007 -10.0760 -8.0897 26 6 2.7046 -5.5296 -5.5568 27 8 3.9791 -0.4768 -4.0051 28 6 4.3537 0.8400 -3.5878 29 1 4.3574 1.5443 -4.4197 30 6 3.4275 1.2848 -2.4299 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 1.6885 1.8464 0.8900 36 1 3.9784 2.1766 0.0902 37 1 3.8508 0.5686 0.8428 38 1 5.8235 1.5322 -0.8882 39 1 5.9139 -0.2486 -0.9794 40 1 6.7464 -0.5585 -4.3644 41 1 6.9237 -1.0973 -2.6599 42 1 5.2603 -2.2067 -5.4881 43 1 5.9226 -3.2199 -4.1830 44 1 5.1765 -4.4988 -6.8670 45 1 5.1953 -5.9810 -5.8187 46 1 2.9255 -5.0081 -7.7002 47 1 4.7607 -6.6267 -10.3023 48 1 2.8004 -6.4181 -4.9327 49 1 1.6885 -5.1355 -5.5758 50 1 2.3988 0.9796 -2.6217 51 1 3.4883 2.3630 -2.2815 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276897865.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:23 Heat of formation + Delta-G solvation = -96.403934 kcal Electronic energy + Delta-G solvation = -30345.071052 eV Core-core repulsion = 26245.239883 eV Total energy + Delta-G solvation = -4099.831168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.73136 -40.92922 -39.14068 -38.65181 -37.27019 -34.63113 -33.74968 -33.21213 -31.22023 -29.97676 -29.32890 -27.51605 -27.04658 -26.67948 -25.99297 -24.11323 -22.57777 -21.71647 -21.51920 -21.32716 -19.67928 -18.71773 -18.05435 -17.78122 -17.54798 -17.30988 -16.83563 -16.52377 -16.41705 -16.16381 -15.86734 -15.81058 -15.63284 -15.04224 -14.59743 -14.50399 -14.24299 -14.20702 -13.83944 -13.50285 -13.37867 -13.29823 -13.20553 -12.98747 -12.82548 -12.72895 -12.59442 -12.56019 -12.44079 -12.26827 -12.15317 -11.91089 -11.83316 -11.73081 -11.60262 -11.36624 -11.03834 -10.64305 -10.59106 -10.48360 -10.36090 -9.49039 -9.25789 -8.15161 -6.26484 1.48417 1.50208 1.59984 1.75377 2.07409 2.47709 2.83389 2.84992 3.08975 3.14949 3.37951 3.57437 3.58489 3.88156 3.99116 4.04712 4.17706 4.22246 4.26076 4.27780 4.33091 4.36430 4.39529 4.44362 4.46392 4.50140 4.53906 4.58972 4.61470 4.64721 4.70236 4.72672 4.76760 4.81457 4.88502 4.90011 4.92952 4.97572 5.01709 5.04073 5.11573 5.15362 5.29850 5.60560 5.82717 5.94230 6.07076 6.25272 6.30046 6.34321 6.81883 7.00527 7.28436 7.43520 8.95002 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018246 B = 0.002344 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.252286 B =11940.961068 C =12992.678374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.408 6.408 3 C 0.057 3.943 4 C 0.049 3.951 5 N -0.529 5.529 6 C 0.039 3.961 7 C -0.118 4.118 8 H 0.133 0.867 9 C -0.135 4.135 10 C 0.107 3.893 11 H 0.055 0.945 12 C -0.125 4.125 13 C 0.524 3.476 14 O -0.586 6.586 15 N -0.651 5.651 16 C 0.117 3.883 17 C 0.023 3.977 18 C -0.528 4.528 19 H 0.066 0.934 20 C 0.021 3.979 21 N -0.919 5.919 22 Si 0.960 3.040 23 H -0.279 1.279 24 H -0.283 1.283 25 H -0.264 1.264 26 C 0.103 3.897 27 O -0.386 6.386 28 C 0.066 3.934 29 H 0.113 0.887 30 C 0.026 3.974 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.093 0.907 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.035 0.965 47 H 0.265 0.735 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.057 0.943 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.567 19.714 16.948 26.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.327 6.327 3 C -0.020 4.020 4 C -0.079 4.079 5 N -0.255 5.255 6 C -0.089 4.089 7 C -0.137 4.137 8 H 0.151 0.849 9 C -0.173 4.173 10 C 0.050 3.950 11 H 0.073 0.927 12 C -0.165 4.165 13 C 0.316 3.684 14 O -0.467 6.467 15 N -0.385 5.385 16 C -0.006 4.006 17 C 0.003 3.997 18 C -0.566 4.566 19 H 0.084 0.916 20 C -0.179 4.179 21 N -0.557 5.557 22 Si 0.785 3.215 23 H -0.205 1.205 24 H -0.209 1.209 25 H -0.188 1.188 26 C -0.020 4.020 27 O -0.306 6.306 28 C 0.008 3.992 29 H 0.131 0.869 30 C -0.102 4.102 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.111 0.889 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.101 0.899 46 H 0.053 0.947 47 H 0.074 0.926 48 H 0.100 0.900 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.936 19.343 17.223 26.366 hybrid contribution -0.313 0.005 -0.448 0.546 sum 4.624 19.348 16.775 26.021 Atomic orbital electron populations 1.22809 0.80490 1.02959 1.00478 1.88011 1.20491 1.28786 1.95419 1.22768 0.93648 0.84699 1.00843 1.22383 0.93617 0.98855 0.93020 1.64892 1.07001 1.51809 1.01750 1.23048 0.88158 1.02100 0.95561 1.23513 0.96222 0.99195 0.94774 0.84921 1.23370 0.95913 0.94234 1.03754 1.22609 0.88709 0.88578 0.95153 0.92697 1.21819 0.95209 0.96471 1.02968 1.20921 0.90267 0.79815 0.77427 1.90671 1.42162 1.70996 1.42909 1.50071 1.21403 1.25243 1.41817 1.23249 0.96429 0.93782 0.87110 1.20166 0.92618 0.96541 0.90348 1.21200 1.41110 0.91996 1.02308 0.91626 1.25778 0.94485 1.01208 0.96478 1.70065 1.41173 1.33451 1.10994 0.85525 0.77524 0.80063 0.78352 1.20458 1.20855 1.18835 1.23179 0.92281 0.89244 0.97268 1.88526 1.50994 1.15979 1.75102 1.23776 0.93772 0.85641 0.96049 0.86917 1.23549 0.99165 0.96679 0.90798 0.94248 0.90224 0.92209 0.93353 0.90984 0.90651 0.90277 0.91422 0.90408 0.88887 0.87913 0.87906 0.85513 0.91976 0.89898 0.94676 0.92606 0.90024 0.93423 0.92424 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.41 -11.15 10.65 -148.98 -1.59 -12.74 16 3 C 0.06 1.09 5.76 71.98 0.41 1.50 16 4 C 0.05 0.87 5.43 86.30 0.47 1.34 16 5 N -0.53 -11.97 5.18 -883.11 -4.57 -16.54 16 6 C 0.04 0.64 5.78 86.40 0.50 1.14 16 7 C -0.12 -1.86 4.24 -8.92 -0.04 -1.89 16 8 H 0.13 1.25 8.14 -2.38 -0.02 1.23 16 9 C -0.14 -2.42 5.90 31.99 0.19 -2.23 16 10 C 0.11 3.13 2.37 31.26 0.07 3.20 16 11 H 0.06 1.94 7.81 -2.39 -0.02 1.92 16 12 C -0.13 -3.89 5.28 29.85 0.16 -3.73 16 13 C 0.52 22.26 8.01 87.66 0.70 22.96 16 14 O -0.59 -29.55 16.39 3.17 0.05 -29.50 16 15 N -0.65 -28.23 3.69 -858.89 -3.17 -31.40 16 16 C 0.12 5.01 7.98 83.09 0.66 5.68 16 17 C 0.02 1.11 3.77 -11.30 -0.04 1.07 16 18 C -0.53 -27.48 8.83 25.60 0.23 -27.25 16 19 H 0.07 3.31 7.81 -2.91 -0.02 3.29 16 20 C 0.02 1.09 5.46 84.66 0.46 1.55 16 21 N -0.92 -50.89 13.26 21.45 0.28 -50.60 16 22 Si 0.96 41.28 29.54 68.60 2.03 43.30 16 23 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 24 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 26 C 0.10 4.64 8.18 83.17 0.68 5.33 16 27 O -0.39 -12.89 10.26 -142.77 -1.47 -14.36 16 28 C 0.07 1.48 4.62 32.06 0.15 1.63 16 29 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 30 C 0.03 0.58 4.76 86.60 0.41 0.99 16 31 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 0.91 6.51 -2.39 -0.02 0.89 16 35 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.08 0.89 7.81 -2.39 -0.02 0.87 16 37 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.07 0.78 7.61 -2.39 -0.02 0.76 16 39 H 0.08 1.37 7.39 -2.38 -0.02 1.35 16 40 H 0.09 1.45 8.07 -2.39 -0.02 1.43 16 41 H 0.10 1.47 7.68 -2.39 -0.02 1.45 16 42 H 0.10 3.05 8.14 -2.38 -0.02 3.03 16 43 H 0.13 3.17 8.14 -2.39 -0.02 3.15 16 44 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 45 H 0.08 3.39 8.10 -2.39 -0.02 3.37 16 46 H 0.04 1.94 8.11 -2.38 -0.02 1.92 16 47 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 48 H 0.08 3.48 8.10 -2.39 -0.02 3.46 16 49 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 50 H 0.06 1.66 7.49 -2.39 -0.02 1.65 16 51 H 0.07 1.16 8.03 -2.39 -0.02 1.14 16 Total: -1.00 -73.38 406.06 -1.28 -74.65 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.89 Total: 24.05 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 6.26 Total: 13.13 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -7.46 Total: -98.54 kcal Atomic # 8 Polarization: -53.60 SS G_CDS: -3.00 Total: -56.60 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -73.38 -1.28 -74.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276897865.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.749 kcal (2) G-P(sol) polarization free energy of solvation -73.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds