Wall clock time and date at job start Tue Mar 31 2020 22:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42904 * 113.99625 * 2 1 4 4 O 1.42896 * 109.47061 * 75.00147 * 3 2 1 5 5 C 1.42904 * 114.00321 * 74.99631 * 4 3 2 6 6 C 1.52993 * 109.47157 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47095 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.47104 * 180.02562 * 7 6 5 9 9 C 1.46907 * 110.99968 * 179.97438 * 8 7 6 10 10 C 1.54412 * 129.01236 * 180.02562 * 9 8 7 11 11 C 1.54419 * 78.89086 * 180.64564 * 10 9 8 12 12 C 1.50703 * 129.01419 * 180.64405 * 11 10 9 13 13 O 1.21281 * 119.99538 * 359.97438 * 12 11 10 14 14 N 1.34769 * 119.99988 * 180.02562 * 12 11 10 15 15 C 1.47584 * 134.49063 * 180.02562 * 14 12 11 16 16 C 1.53947 * 86.11565 * 204.63541 * 15 14 12 17 17 C 1.50699 * 113.73968 * 222.04272 * 16 15 14 18 18 H 1.07998 * 120.00165 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99722 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99969 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99800 * 180.02562 * 19 17 16 22 22 H 1.48507 * 109.46673 * 90.00806 * 21 19 17 23 23 H 1.48502 * 109.47065 * 210.00473 * 21 19 17 24 24 H 1.48489 * 109.47475 * 330.00611 * 21 19 17 25 25 C 1.47577 * 134.49641 * 359.97438 * 14 12 11 26 26 C 1.54891 * 84.49409 * 43.15382 * 11 10 9 27 27 C 1.54885 * 84.49103 * 318.13307 * 11 10 9 28 28 H 1.08994 * 109.47494 * 300.00209 * 1 2 3 29 29 H 1.09003 * 109.47372 * 60.00174 * 1 2 3 30 30 H 1.09000 * 109.46911 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47362 * 314.99644 * 3 2 1 32 32 H 1.09002 * 109.46947 * 194.99920 * 3 2 1 33 33 H 1.09004 * 109.46986 * 59.99843 * 5 4 3 34 34 H 1.09002 * 109.46994 * 300.00091 * 5 4 3 35 35 H 1.09000 * 109.47412 * 60.00522 * 6 5 4 36 36 H 1.09002 * 109.47765 * 300.00099 * 6 5 4 37 37 H 1.08997 * 109.47495 * 60.00048 * 7 6 5 38 38 H 1.09002 * 109.46809 * 299.99959 * 7 6 5 39 39 H 1.00905 * 111.00263 * 56.04491 * 8 7 6 40 40 H 1.08992 * 114.93459 * 68.16028 * 10 9 8 41 41 H 1.08998 * 114.98218 * 293.12567 * 10 9 8 42 42 H 1.09001 * 113.76908 * 90.33461 * 15 14 12 43 43 H 1.08997 * 113.76763 * 318.93723 * 15 14 12 44 44 H 1.08997 * 113.73914 * 90.73986 * 16 15 14 45 45 H 0.97000 * 119.99858 * 179.97438 * 20 19 17 46 46 H 1.08995 * 113.76947 * 41.05826 * 25 14 12 47 47 H 1.09001 * 113.87193 * 269.67722 * 25 14 12 48 48 H 1.09001 * 114.98080 * 69.39259 * 26 11 10 49 49 H 1.09003 * 114.97457 * 204.56822 * 26 11 10 50 50 H 1.09008 * 114.97367 * 155.43371 * 27 11 10 51 51 H 1.08998 * 114.98354 * 290.60293 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 8 1.8853 1.8825 1.3013 5 6 2.7910 1.3426 2.2659 6 6 2.5697 2.0305 3.6144 7 6 3.5399 1.4529 4.6469 8 7 3.3269 2.1130 5.9418 9 6 4.2429 1.5821 6.9603 10 6 4.3751 1.9744 8.4479 11 6 5.4719 0.8942 8.3265 12 6 6.4024 0.3636 9.3865 13 8 6.3424 0.7965 10.5178 14 7 7.3018 -0.5911 9.0771 15 6 8.3367 -1.3216 9.8344 16 6 9.0362 -1.5258 8.4783 17 6 9.5968 -2.9115 8.2874 18 1 9.4861 -3.6509 9.0668 19 6 10.2502 -3.2356 7.1174 20 7 10.3846 -2.3353 6.1682 21 14 10.9445 -4.9536 6.8804 22 1 9.9149 -5.8214 6.2541 23 1 12.1386 -4.8878 6.0000 24 1 11.3318 -5.5171 8.1985 25 6 7.6469 -1.3268 7.8452 26 6 5.8141 1.6040 6.9930 27 6 4.4202 0.1341 7.4807 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.4941 1.9330 -0.7267 32 1 3.0647 1.2337 -0.2660 33 1 3.8162 1.5116 1.9361 34 1 2.6148 0.2720 2.3704 35 1 1.5446 1.8619 3.9444 36 1 2.7462 3.1010 3.5096 37 1 4.5648 1.6219 4.3168 38 1 3.3637 0.3824 4.7519 39 1 2.3665 2.0255 6.2388 40 1 3.5259 1.6987 9.0731 41 1 4.7432 2.9847 8.6266 42 1 7.9789 -2.2460 10.2878 43 1 8.8975 -0.6953 10.5282 44 1 9.7491 -0.7396 8.2296 45 1 10.8446 -2.5633 5.3451 46 1 7.6567 -0.7048 6.9502 47 1 7.0875 -2.2530 7.7131 48 1 6.2533 2.5960 7.0990 49 1 6.3127 0.9779 6.2530 50 1 4.8319 -0.5838 6.7712 51 1 3.5633 -0.2409 8.0402 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277680472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:12 Heat of formation + Delta-G solvation = -4.622340 kcal Electronic energy + Delta-G solvation = -29006.564630 eV Core-core repulsion = 24910.713410 eV Total energy + Delta-G solvation = -4095.851220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.93395 -39.24768 -38.96430 -37.00533 -36.77376 -35.50440 -32.69678 -31.38254 -29.32216 -27.85240 -26.26856 -25.74180 -25.61455 -25.54268 -25.09512 -24.26359 -23.15399 -21.67311 -20.13589 -18.66370 -17.83865 -17.66418 -17.25327 -16.90434 -16.61500 -16.40206 -15.87393 -15.60449 -15.24905 -14.79448 -14.60956 -14.47518 -14.27919 -14.23849 -14.12935 -13.60044 -13.50863 -13.23579 -12.58341 -12.39139 -12.19791 -11.98633 -11.81629 -11.65356 -11.53462 -11.32498 -11.23439 -11.20472 -11.13587 -11.10414 -10.99609 -10.80064 -10.55912 -10.47607 -10.32569 -10.23081 -10.12997 -9.65546 -9.32032 -9.01205 -8.67160 -8.60529 -7.88548 -6.21014 -4.26527 2.95966 3.08832 3.21418 3.29345 3.31910 3.39348 3.44332 3.80608 4.17370 4.30559 4.32091 4.43158 4.60645 4.62924 4.72184 4.73903 4.81027 4.89306 4.94612 5.03669 5.05993 5.06968 5.10816 5.17452 5.28796 5.33691 5.44883 5.57234 5.63564 5.70912 5.80536 5.83833 5.91670 5.95497 5.98840 6.05082 6.12954 6.19074 6.26793 6.36684 6.37048 6.55134 6.65005 6.78171 6.79721 6.85587 7.07816 7.52456 7.76636 8.13866 8.46508 8.75181 8.77107 9.40379 10.88579 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.008398 B = 0.002417 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3333.359357 B =11579.781649 C =14383.074953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.405 6.405 3 C 0.213 3.787 4 O -0.402 6.402 5 C 0.064 3.936 6 C -0.116 4.116 7 C 0.062 3.938 8 N -0.623 5.623 9 C 0.045 3.955 10 C -0.079 4.079 11 C -0.143 4.143 12 C 0.585 3.415 13 O -0.560 6.560 14 N -0.632 5.632 15 C 0.103 3.897 16 C 0.034 3.966 17 C -0.519 4.519 18 H 0.063 0.937 19 C 0.068 3.932 20 N -0.886 5.886 21 Si 0.895 3.105 22 H -0.279 1.279 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.106 3.894 26 C -0.089 4.089 27 C -0.131 4.131 28 H 0.048 0.952 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.348 0.652 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.264 0.736 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.903 7.517 -10.952 22.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.325 6.325 3 C 0.099 3.901 4 O -0.322 6.322 5 C -0.013 4.013 6 C -0.154 4.154 7 C -0.067 4.067 8 N -0.251 5.251 9 C -0.048 4.048 10 C -0.117 4.117 11 C -0.147 4.147 12 C 0.374 3.626 13 O -0.440 6.440 14 N -0.365 5.365 15 C -0.018 4.018 16 C 0.015 3.985 17 C -0.557 4.557 18 H 0.081 0.919 19 C -0.136 4.136 20 N -0.523 5.523 21 Si 0.722 3.278 22 H -0.205 1.205 23 H -0.211 1.211 24 H -0.197 1.197 25 C -0.016 4.016 26 C -0.127 4.127 27 C -0.172 4.172 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.056 0.944 39 H 0.168 0.832 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.092 0.908 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.634 8.458 -10.646 22.267 hybrid contribution -0.124 -1.830 -0.258 1.853 sum -17.757 6.628 -10.904 21.867 Atomic orbital electron populations 1.22762 0.80522 1.02760 1.00408 1.88025 1.20838 1.29656 1.93958 1.23942 0.98728 0.82667 0.84768 1.87972 1.60993 1.62279 1.20978 1.22466 0.92485 0.97746 0.88606 1.21457 0.99886 1.01659 0.92373 1.21824 1.00418 0.96115 0.88342 1.59869 1.08056 1.56475 1.00741 1.24313 0.94481 0.93547 0.92474 1.23774 0.96579 0.98232 0.93114 1.23347 0.96815 0.98806 0.95718 1.18150 0.78589 0.79496 0.86409 1.90639 1.70751 1.60923 1.21692 1.50342 1.33957 1.35945 1.16212 1.23538 0.86285 0.93586 0.98399 1.20518 0.91414 0.98522 0.88094 1.20966 1.36637 0.96002 1.02096 0.91868 1.25022 0.95231 0.97354 0.95949 1.69946 1.42002 1.33714 1.06629 0.86548 0.78676 0.84261 0.78288 1.20539 1.21120 1.19695 1.23726 0.97942 0.93140 0.86820 1.24552 0.93562 1.00254 0.94379 1.24661 0.97253 0.97272 0.97993 0.93294 0.93967 0.89733 0.89157 0.89029 0.92740 0.92506 0.91287 0.90106 0.90142 0.94357 0.83241 0.90752 0.90090 0.90713 0.91915 0.91636 0.92644 0.91897 0.90831 0.90169 0.90024 0.90189 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.89 101.05 1.10 1.31 16 2 O -0.40 -3.70 10.76 -59.04 -0.64 -4.33 16 3 C 0.21 1.59 7.07 101.05 0.71 2.30 16 4 O -0.40 -3.72 10.40 -59.04 -0.61 -4.34 16 5 C 0.06 0.55 5.82 37.15 0.22 0.76 16 6 C -0.12 -0.96 5.84 -26.73 -0.16 -1.12 16 7 C 0.06 0.58 5.69 -3.82 -0.02 0.55 16 8 N -0.62 -6.33 6.86 -116.36 -0.80 -7.13 16 9 C 0.04 0.54 3.89 -146.94 -0.57 -0.03 16 10 C -0.08 -1.06 7.78 -26.71 -0.21 -1.27 16 11 C -0.14 -2.28 3.11 -172.27 -0.54 -2.82 16 12 C 0.59 11.82 8.17 -10.99 -0.09 11.73 16 13 O -0.56 -12.92 17.82 5.56 0.10 -12.82 16 14 N -0.63 -12.95 3.61 -178.41 -0.64 -13.60 16 15 C 0.10 2.15 8.39 -2.97 -0.02 2.13 16 16 C 0.03 0.78 3.62 -90.83 -0.33 0.45 16 17 C -0.52 -13.02 8.77 -34.44 -0.30 -13.32 16 18 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 19 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.89 -23.69 13.27 55.43 0.74 -22.95 16 21 Si 0.89 19.86 29.54 -169.99 -5.02 14.84 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 25 C 0.11 2.20 8.17 -2.96 -0.02 2.18 16 26 C -0.09 -1.26 7.95 -24.71 -0.20 -1.46 16 27 C -0.13 -1.76 7.84 -25.99 -0.20 -1.97 16 28 H 0.05 0.34 8.03 -51.93 -0.42 -0.08 16 29 H 0.04 0.21 8.11 -51.93 -0.42 -0.21 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.49 8.01 -51.93 -0.42 0.07 16 32 H 0.09 0.56 8.01 -51.93 -0.42 0.15 16 33 H 0.05 0.43 8.11 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.03 -51.93 -0.42 0.10 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.35 3.00 8.82 -39.29 -0.35 2.65 16 40 H 0.07 0.95 7.94 -51.93 -0.41 0.54 16 41 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 42 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.07 1.65 8.13 -51.93 -0.42 1.23 16 45 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 46 H 0.06 1.29 7.63 -51.93 -0.40 0.89 16 47 H 0.07 1.52 8.09 -51.93 -0.42 1.10 16 48 H 0.08 1.12 7.91 -51.93 -0.41 0.71 16 49 H 0.08 1.18 7.45 -51.93 -0.39 0.79 16 50 H 0.08 1.10 7.97 -51.92 -0.41 0.68 16 51 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 LS Contribution 423.17 15.07 6.38 6.38 Total: -1.00 -29.84 423.17 -10.27 -40.11 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -9.04 Total: 2.77 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.73 Total: 1.08 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.71 Total: -43.68 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.15 Total: -21.50 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -29.84 -10.27 -40.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277680472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.492 kcal (2) G-P(sol) polarization free energy of solvation -29.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds