Wall clock time and date at job start Tue Mar 31 2020 21:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42893 * 114.00095 * 2 1 4 4 O 1.42900 * 109.47259 * 75.00087 * 3 2 1 5 5 C 1.42903 * 114.00156 * 75.00159 * 4 3 2 6 6 C 1.52998 * 109.47296 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47247 * 180.02562 * 6 5 4 8 8 N 1.46899 * 109.47175 * 180.02562 * 7 6 5 9 9 C 1.48106 * 110.99904 * 189.99793 * 8 7 6 10 10 C 1.53286 * 85.92314 * 222.87272 * 9 8 7 11 11 C 1.52341 * 128.80117 * 243.48292 * 10 9 8 12 12 C 1.52336 * 128.80448 * 163.14691 * 10 9 8 13 13 H 1.09000 * 117.51503 * 10.38623 * 12 10 9 14 14 C 1.50700 * 117.51334 * 225.31336 * 12 10 9 15 15 O 1.21282 * 120.00222 * 359.97438 * 14 12 10 16 16 N 1.34780 * 120.00120 * 179.97438 * 14 12 10 17 17 C 1.47067 * 136.05152 * 359.63028 * 16 14 12 18 18 C 1.53503 * 87.98291 * 207.37706 * 17 16 14 19 19 C 1.50705 * 114.20461 * 220.34453 * 18 17 16 20 20 H 1.08000 * 119.99726 * 93.59837 * 19 18 17 21 21 C 1.37873 * 119.99976 * 273.59862 * 19 18 17 22 22 N 1.31519 * 120.00089 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99825 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47598 * 59.99851 * 23 21 19 25 25 H 1.48503 * 109.47109 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.46963 * 299.99737 * 23 21 19 27 27 C 1.47066 * 136.06263 * 180.02562 * 16 14 12 28 28 C 1.48099 * 111.00180 * 90.41114 * 8 7 6 29 29 H 1.09005 * 109.47472 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47184 * 299.99710 * 1 2 3 31 31 H 1.08998 * 109.47360 * 59.99907 * 1 2 3 32 32 H 1.08993 * 109.47500 * 315.00081 * 3 2 1 33 33 H 1.09005 * 109.47189 * 195.00078 * 3 2 1 34 34 H 1.09000 * 109.47381 * 60.00025 * 5 4 3 35 35 H 1.09001 * 109.46682 * 299.99979 * 5 4 3 36 36 H 1.09000 * 109.47184 * 59.99539 * 6 5 4 37 37 H 1.09001 * 109.46940 * 299.99456 * 6 5 4 38 38 H 1.09000 * 109.47493 * 59.99620 * 7 6 5 39 39 H 1.09001 * 109.46618 * 299.99545 * 7 6 5 40 40 H 1.08995 * 113.79896 * 108.61920 * 9 8 7 41 41 H 1.09000 * 113.79863 * 337.12519 * 9 8 7 42 42 H 1.08999 * 117.51543 * 134.68514 * 11 10 9 43 43 H 1.08998 * 117.51388 * 349.55407 * 11 10 9 44 44 H 1.09003 * 113.46750 * 322.15352 * 17 16 14 45 45 H 1.09000 * 113.47312 * 92.59797 * 17 16 14 46 46 H 1.08998 * 114.20497 * 87.52255 * 18 17 16 47 47 H 0.96998 * 119.99623 * 179.97438 * 22 21 19 48 48 H 1.09001 * 113.46506 * 267.40576 * 27 16 14 49 49 H 1.09003 * 113.46351 * 37.77950 * 27 16 14 50 50 H 1.08998 * 113.80156 * 22.87142 * 28 8 7 51 51 H 1.09003 * 113.79900 * 251.37751 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 8 1.8854 1.8824 1.3014 5 6 2.7912 1.3425 2.2658 6 6 2.5691 2.0296 3.6147 7 6 3.5393 1.4521 4.6472 8 7 3.3256 2.1113 5.9424 9 6 4.3961 1.7556 6.9020 10 6 3.2719 1.6085 7.9336 11 6 3.0341 2.4099 9.2072 12 6 3.3013 0.9038 9.2838 13 1 4.2714 0.5824 9.6630 14 6 2.1396 0.0071 9.6265 15 8 1.2273 -0.1310 8.8394 16 7 2.1145 -0.6414 10.8078 17 6 2.9953 -0.7383 11.9815 18 6 2.4115 -2.1348 12.2367 19 6 2.1536 -2.4406 13.6897 20 1 1.1780 -2.2572 14.1152 21 6 3.1631 -2.9545 14.4757 22 7 4.3512 -3.1774 13.9576 23 14 2.8431 -3.3342 16.2765 24 1 1.7566 -4.3405 16.3848 25 1 4.0806 -3.8725 16.8963 26 1 2.4382 -2.0908 16.9802 27 6 1.1976 -1.5689 11.4874 28 6 2.3233 1.3801 6.7512 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.4942 1.9329 -0.7266 33 1 3.0648 1.2336 -0.2660 34 1 3.8163 1.5115 1.9361 35 1 2.6149 0.2720 2.3704 36 1 1.5440 1.8603 3.9443 37 1 2.7451 3.1002 3.5104 38 1 4.5642 1.6217 4.3174 39 1 3.3637 0.3814 4.7515 40 1 5.0848 2.5730 7.1155 41 1 4.9035 0.8197 6.6679 42 1 2.0181 2.7517 9.4047 43 1 3.8285 3.0796 9.5364 44 1 4.0556 -0.7506 11.7287 45 1 2.7565 -0.0183 12.7642 46 1 2.9271 -2.9378 11.7100 47 1 5.0614 -3.5385 14.5108 48 1 0.4794 -1.0702 12.1383 49 1 0.7286 -2.2867 10.8143 50 1 2.2126 0.3323 6.4722 51 1 1.3699 1.9000 6.8453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277683033.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:40 Heat of formation + Delta-G solvation = -31.858572 kcal Electronic energy + Delta-G solvation = -28573.473633 eV Core-core repulsion = 24476.441362 eV Total energy + Delta-G solvation = -4097.032271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.58181 -39.29417 -39.10421 -37.25115 -36.72727 -35.13270 -32.76032 -32.64948 -29.34904 -28.06244 -27.21897 -26.25280 -25.58882 -24.98419 -24.87369 -23.17520 -22.99064 -21.31056 -20.22603 -18.75962 -17.97942 -17.62671 -17.21906 -16.92846 -16.61609 -16.49008 -15.91651 -15.77713 -15.10415 -15.01727 -14.82569 -14.59451 -14.41740 -14.35892 -14.01215 -13.64173 -13.21452 -13.05263 -12.66796 -12.42486 -12.31413 -12.17161 -11.91864 -11.76129 -11.66742 -11.53582 -11.30971 -11.27264 -11.01902 -10.96280 -10.86179 -10.69616 -10.54908 -10.38602 -10.23269 -10.17942 -10.13901 -9.60731 -9.24220 -9.03433 -8.81066 -8.60234 -7.86934 -6.20609 -4.26327 2.91785 3.17453 3.23818 3.29358 3.31044 3.39613 3.43632 3.74401 4.11956 4.29227 4.34503 4.55264 4.61388 4.70847 4.79480 4.84404 4.92945 4.96550 5.02456 5.06400 5.08361 5.09454 5.24069 5.26637 5.29720 5.36734 5.42270 5.44473 5.49991 5.65363 5.70497 5.78259 5.93122 5.95943 5.97106 6.04913 6.07954 6.16627 6.25146 6.25546 6.38866 6.42118 6.56442 6.64425 6.80817 6.84117 6.95641 7.52375 7.77026 8.15589 8.51195 8.76636 8.77890 9.40578 10.89104 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020067 B = 0.001679 C = 0.001611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.974896 B =16668.375571 C =17374.446663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.213 3.787 4 O -0.401 6.401 5 C 0.064 3.936 6 C -0.109 4.109 7 C 0.023 3.977 8 N -0.480 5.480 9 C 0.045 3.955 10 C -0.138 4.138 11 C -0.112 4.112 12 C -0.164 4.164 13 H 0.122 0.878 14 C 0.561 3.439 15 O -0.563 6.563 16 N -0.640 5.640 17 C 0.100 3.900 18 C 0.034 3.966 19 C -0.518 4.518 20 H 0.063 0.937 21 C 0.069 3.931 22 N -0.886 5.886 23 Si 0.897 3.103 24 H -0.275 1.275 25 H -0.287 1.287 26 H -0.275 1.275 27 C 0.100 3.900 28 C 0.064 3.936 29 H 0.085 0.915 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.047 0.953 40 H 0.092 0.908 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.106 0.894 44 H 0.059 0.941 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.265 0.735 48 H 0.073 0.927 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.197 10.877 -22.059 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C 0.099 3.901 4 O -0.321 6.321 5 C -0.013 4.013 6 C -0.147 4.147 7 C -0.106 4.106 8 N -0.202 5.202 9 C -0.083 4.083 10 C -0.139 4.139 11 C -0.149 4.149 12 C -0.186 4.186 13 H 0.140 0.860 14 C 0.350 3.650 15 O -0.444 6.444 16 N -0.373 5.373 17 C -0.023 4.023 18 C 0.015 3.985 19 C -0.556 4.556 20 H 0.081 0.919 21 C -0.135 4.135 22 N -0.523 5.523 23 Si 0.724 3.276 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.201 1.201 27 C -0.022 4.022 28 C -0.064 4.064 29 H 0.103 0.897 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.065 0.935 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.124 0.876 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.091 0.909 49 H 0.075 0.925 50 H 0.097 0.903 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.214 11.499 -22.784 25.522 hybrid contribution 0.220 -1.057 1.109 1.548 sum 0.006 10.442 -21.675 24.059 Atomic orbital electron populations 1.22775 0.80337 1.02861 1.00511 1.88001 1.21001 1.29628 1.93981 1.23923 0.98523 0.82748 0.84917 1.87998 1.61027 1.62191 1.20899 1.22512 0.92047 0.97830 0.88877 1.21357 1.00519 1.01160 0.91630 1.22535 0.99549 0.96968 0.91523 1.68496 1.05414 1.46051 1.00264 1.23500 0.94096 1.00593 0.90108 1.22516 0.98985 1.04177 0.88209 1.22714 1.03451 0.91314 0.97428 1.22126 0.99785 0.94984 1.01679 0.85966 1.19039 0.86224 0.79085 0.80635 1.90617 1.39033 1.65168 1.49542 1.49933 1.26729 1.45430 1.15161 1.23605 0.94204 1.01107 0.83344 1.20347 0.90361 0.91933 0.95856 1.20870 0.97783 1.43653 0.93305 0.91871 1.25027 0.95053 0.94541 0.98881 1.69942 1.02272 1.43617 1.36450 0.86585 0.77672 0.78869 0.84484 1.20038 1.21220 1.20056 1.23338 0.95960 0.89900 0.92969 1.23415 0.96133 0.97888 0.88968 0.89659 0.93147 0.93948 0.89194 0.89239 0.93196 0.92660 0.91066 0.90444 0.90868 0.93505 0.88986 0.90754 0.88052 0.87562 0.92276 0.90757 0.91417 0.92571 0.90894 0.92520 0.90297 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.89 101.05 1.10 1.33 16 2 O -0.41 -3.81 10.76 -59.04 -0.64 -4.44 16 3 C 0.21 1.60 7.07 101.05 0.71 2.32 16 4 O -0.40 -3.96 10.40 -59.04 -0.61 -4.57 16 5 C 0.06 0.58 5.82 37.16 0.22 0.79 16 6 C -0.11 -1.07 5.89 -26.73 -0.16 -1.23 16 7 C 0.02 0.23 4.80 -3.83 -0.02 0.21 16 8 N -0.48 -5.64 6.15 -241.62 -1.49 -7.13 16 9 C 0.05 0.50 7.97 -3.01 -0.02 0.48 16 10 C -0.14 -1.83 3.03 -154.98 -0.47 -2.30 16 11 C -0.11 -1.43 10.24 -26.99 -0.28 -1.70 16 12 C -0.16 -2.50 6.02 -92.03 -0.55 -3.05 16 13 H 0.12 1.76 8.14 -51.93 -0.42 1.34 16 14 C 0.56 10.87 7.86 -10.98 -0.09 10.78 16 15 O -0.56 -12.17 15.91 5.56 0.09 -12.08 16 16 N -0.64 -13.01 3.69 -185.23 -0.68 -13.70 16 17 C 0.10 2.08 7.99 -8.50 -0.07 2.01 16 18 C 0.03 0.80 3.78 -91.27 -0.35 0.45 16 19 C -0.52 -13.06 8.82 -34.44 -0.30 -13.36 16 20 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -23.84 13.26 55.43 0.74 -23.11 16 23 Si 0.90 19.86 29.54 -169.99 -5.02 14.84 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.10 2.10 8.18 -8.52 -0.07 2.03 16 28 C 0.06 0.88 6.39 -3.01 -0.02 0.86 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.05 0.40 8.03 -51.93 -0.42 -0.02 16 31 H 0.04 0.23 8.11 -51.93 -0.42 -0.19 16 32 H 0.09 0.50 8.01 -51.93 -0.42 0.08 16 33 H 0.09 0.51 8.01 -51.93 -0.42 0.10 16 34 H 0.05 0.37 8.11 -51.93 -0.42 -0.05 16 35 H 0.06 0.53 8.03 -51.93 -0.42 0.11 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 39 H 0.05 0.49 7.38 -51.93 -0.38 0.10 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 42 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.07 1.52 8.10 -51.93 -0.42 1.10 16 46 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 47 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.07 1.46 8.10 -51.93 -0.42 1.04 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 50 H 0.08 1.18 7.35 -51.93 -0.38 0.80 16 51 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 422.13 15.07 6.36 6.36 Total: -1.00 -29.67 422.13 -10.86 -40.52 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -9.14 Total: 2.02 kcal Atomic # 6 Polarization: 1.74 SS G_CDS: -0.46 Total: 1.28 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -1.44 Total: -43.93 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -1.16 Total: -21.10 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -29.67 -10.86 -40.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277683033.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.666 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds