Wall clock time and date at job start Tue Mar 31 2020 21:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 113.99922 * 2 1 4 4 O 1.42898 * 109.46999 * 75.00450 * 3 2 1 5 5 C 1.42895 * 113.99964 * 74.99878 * 4 3 2 6 6 C 1.53007 * 109.47033 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47143 * 180.02562 * 6 5 4 8 8 N 1.46901 * 109.47011 * 179.97438 * 7 6 5 9 9 C 1.48097 * 111.00116 * 169.99720 * 8 7 6 10 10 C 1.53285 * 85.92619 * 222.87631 * 9 8 7 11 11 C 1.52339 * 128.79973 * 243.48578 * 10 9 8 12 12 C 1.52333 * 128.80662 * 163.14606 * 10 9 8 13 13 H 1.08994 * 117.55343 * 225.29773 * 12 10 9 14 14 C 1.50698 * 117.51586 * 10.43546 * 12 10 9 15 15 O 1.21279 * 120.00132 * 359.81475 * 14 12 10 16 16 N 1.34781 * 119.99962 * 179.81974 * 14 12 10 17 17 C 1.47584 * 134.48977 * 179.97438 * 16 14 12 18 18 C 1.53947 * 86.11400 * 155.35446 * 17 16 14 19 19 C 1.50699 * 113.73702 * 137.94989 * 18 17 16 20 20 H 1.07999 * 120.00803 * 0.02562 * 19 18 17 21 21 C 1.37881 * 119.99889 * 180.02562 * 19 18 17 22 22 N 1.31520 * 120.00186 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 89.99863 * 23 21 19 25 25 H 1.48503 * 109.47261 * 330.00044 * 23 21 19 26 26 H 1.48500 * 109.47454 * 210.00037 * 23 21 19 27 27 C 1.47575 * 134.49172 * 359.97438 * 16 14 12 28 28 C 1.48101 * 111.00140 * 70.40739 * 8 7 6 29 29 H 1.09003 * 109.47104 * 299.99361 * 1 2 3 30 30 H 1.08999 * 109.47902 * 59.99917 * 1 2 3 31 31 H 1.09008 * 109.47181 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46917 * 315.00538 * 3 2 1 33 33 H 1.08994 * 109.46802 * 195.00233 * 3 2 1 34 34 H 1.08994 * 109.47404 * 59.99909 * 5 4 3 35 35 H 1.09001 * 109.47481 * 299.99556 * 5 4 3 36 36 H 1.08994 * 109.47264 * 59.99622 * 6 5 4 37 37 H 1.09007 * 109.46886 * 300.00121 * 6 5 4 38 38 H 1.08994 * 109.47623 * 59.99506 * 7 6 5 39 39 H 1.09001 * 109.46638 * 299.99115 * 7 6 5 40 40 H 1.08998 * 113.80343 * 108.61813 * 9 8 7 41 41 H 1.09002 * 113.79821 * 337.12457 * 9 8 7 42 42 H 1.09000 * 117.51652 * 134.68411 * 11 10 9 43 43 H 1.09002 * 117.51797 * 349.55144 * 11 10 9 44 44 H 1.09003 * 113.77155 * 41.06216 * 17 16 14 45 45 H 1.09002 * 113.87111 * 269.66915 * 17 16 14 46 46 H 1.08995 * 113.74539 * 269.15625 * 18 17 16 47 47 H 0.96998 * 120.00124 * 180.02562 * 22 21 19 48 48 H 1.09002 * 113.76824 * 90.34958 * 27 16 14 49 49 H 1.08997 * 113.76999 * 318.94298 * 27 16 14 50 50 H 1.09011 * 113.79904 * 22.87690 * 28 8 7 51 51 H 1.08992 * 113.80226 * 251.37808 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8855 1.8824 1.3014 5 6 2.7912 1.3425 2.2657 6 6 2.5691 2.0295 3.6147 7 6 3.5393 1.4519 4.6471 8 7 3.3265 2.1120 5.9421 9 6 4.0731 1.4216 7.0188 10 6 2.8055 1.5995 7.8621 11 6 2.6158 2.4027 9.1426 12 6 2.4058 0.8856 9.1471 13 1 1.3821 0.5192 9.2227 14 6 3.4511 0.0401 9.8278 15 8 4.5609 -0.0548 9.3482 16 7 3.1524 -0.6107 10.9697 17 6 3.9011 -1.4991 11.8799 18 6 2.9095 -1.0472 12.9673 19 6 2.4333 -2.1665 13.8570 20 1 2.7911 -3.1729 13.6973 21 6 1.5407 -1.9057 14.8751 22 7 1.1255 -2.8824 15.6519 23 14 0.9212 -0.1652 15.1511 24 1 -0.3100 0.0549 14.3505 25 1 1.9648 0.8042 14.7307 26 1 0.6165 0.0293 16.5914 27 6 1.9457 -0.7212 11.8119 28 6 2.0353 1.7024 6.5408 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.4941 1.9330 -0.7266 33 1 3.0647 1.2337 -0.2660 34 1 3.8163 1.5114 1.9360 35 1 2.6150 0.2719 2.3704 36 1 1.5441 1.8602 3.9443 37 1 2.7451 3.1002 3.5105 38 1 4.5643 1.6215 4.3174 39 1 3.3637 0.3812 4.7515 40 1 4.9306 1.9833 7.3894 41 1 4.3091 0.3816 6.7933 42 1 1.7301 3.0339 9.2145 43 1 3.5100 2.7888 9.6320 44 1 4.9272 -1.1790 12.0608 45 1 3.8237 -2.5565 11.6267 46 1 3.2397 -0.1715 13.5260 47 1 0.4973 -2.6990 16.3679 48 1 1.2927 -1.5497 11.5375 49 1 1.4106 0.2200 11.9385 50 1 1.6635 0.7459 6.1728 51 1 1.2783 2.4865 6.5327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277683034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:43 Heat of formation + Delta-G solvation = -31.430166 kcal Electronic energy + Delta-G solvation = -28666.790193 eV Core-core repulsion = 24569.776498 eV Total energy + Delta-G solvation = -4097.013694 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.69161 -39.38972 -39.18194 -37.33675 -36.79815 -35.23970 -32.77862 -32.62453 -29.69717 -28.14996 -27.34674 -26.35953 -25.89761 -25.21295 -24.93498 -23.19232 -23.01233 -21.35993 -20.00957 -18.83407 -18.09246 -17.70063 -17.30034 -17.25599 -16.80682 -16.64827 -16.02521 -15.93868 -15.40493 -15.07678 -14.93890 -14.72425 -14.37001 -14.15120 -14.00940 -13.57670 -13.39204 -13.23519 -12.85775 -12.72756 -12.42998 -12.31363 -12.00245 -11.88187 -11.83539 -11.70110 -11.61152 -11.38984 -11.23965 -10.98673 -10.76420 -10.71225 -10.63227 -10.30456 -10.29746 -10.23774 -10.06852 -9.84387 -9.43031 -9.14877 -8.87467 -8.70942 -8.05574 -6.23156 -4.26164 2.78220 3.11148 3.17297 3.25609 3.28401 3.31956 3.33769 3.63096 4.02803 4.21121 4.27866 4.44491 4.55503 4.64106 4.71637 4.76340 4.83353 4.83752 4.95940 4.99701 5.00797 5.03525 5.07717 5.16366 5.25164 5.28510 5.30886 5.37580 5.42194 5.56232 5.63060 5.73469 5.73565 5.81748 5.85759 5.90232 5.95833 5.96795 6.11890 6.15720 6.16349 6.29549 6.30694 6.35255 6.54805 6.76278 6.88134 7.15292 7.51863 8.26380 8.37172 8.61872 8.80116 9.37215 10.88903 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019369 B = 0.001740 C = 0.001698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.260543 B =16086.756364 C =16483.106714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.406 6.406 3 C 0.213 3.787 4 O -0.401 6.401 5 C 0.064 3.936 6 C -0.113 4.113 7 C 0.023 3.977 8 N -0.479 5.479 9 C 0.064 3.936 10 C -0.136 4.136 11 C -0.112 4.112 12 C -0.168 4.168 13 H 0.122 0.878 14 C 0.555 3.445 15 O -0.559 6.559 16 N -0.636 5.636 17 C 0.118 3.882 18 C -0.012 4.012 19 C -0.514 4.514 20 H 0.079 0.921 21 C 0.077 3.923 22 N -0.893 5.893 23 Si 0.873 3.127 24 H -0.274 1.274 25 H -0.262 1.262 26 H -0.286 1.286 27 C 0.087 3.913 28 C 0.044 3.956 29 H 0.049 0.951 30 H 0.042 0.958 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.043 0.957 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.106 0.894 43 H 0.103 0.897 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.266 0.734 48 H 0.086 0.914 49 H 0.059 0.941 50 H 0.074 0.926 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.945 10.788 -27.092 29.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C 0.099 3.901 4 O -0.322 6.322 5 C -0.013 4.013 6 C -0.151 4.151 7 C -0.105 4.105 8 N -0.201 5.201 9 C -0.064 4.064 10 C -0.137 4.137 11 C -0.150 4.150 12 C -0.190 4.190 13 H 0.139 0.861 14 C 0.345 3.655 15 O -0.439 6.439 16 N -0.369 5.369 17 C -0.004 4.004 18 C -0.031 4.031 19 C -0.552 4.552 20 H 0.098 0.902 21 C -0.127 4.127 22 N -0.529 5.529 23 Si 0.700 3.300 24 H -0.199 1.199 25 H -0.187 1.187 26 H -0.212 1.212 27 C -0.036 4.036 28 C -0.084 4.084 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.061 0.939 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.083 0.917 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.104 0.896 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.315 11.441 -27.472 29.761 hybrid contribution -0.810 -0.135 0.217 0.850 sum -1.125 11.306 -27.255 29.528 Atomic orbital electron populations 1.22775 0.80367 1.02842 1.00495 1.88009 1.20972 1.29636 1.93976 1.23933 0.98597 0.82729 0.84848 1.87990 1.60993 1.62230 1.20942 1.22498 0.92236 0.97741 0.88781 1.21430 1.00155 1.01438 0.92041 1.22525 1.00129 0.96643 0.91253 1.68579 1.04595 1.46434 1.00514 1.23328 0.95771 0.98486 0.88777 1.22526 0.98725 1.04101 0.88379 1.22729 1.03753 0.91104 0.97366 1.22165 1.00101 0.95461 1.01240 0.86054 1.19210 0.87611 0.79913 0.78801 1.90623 1.23350 1.65512 1.64385 1.50283 1.17526 1.46764 1.22360 1.23281 0.97006 0.93758 0.86336 1.21064 0.91821 0.98240 0.92023 1.20837 1.26528 0.94607 1.13211 0.90247 1.25006 0.95663 0.96908 0.95080 1.69893 1.32266 1.31957 1.18819 0.86896 0.79780 0.85523 0.77827 1.19916 1.18681 1.21171 1.23994 0.89885 1.00021 0.89654 1.23527 0.93840 1.00248 0.90810 0.93224 0.93908 0.89665 0.89141 0.89172 0.93027 0.92653 0.91215 0.90296 0.90303 0.93869 0.88985 0.90330 0.87539 0.87901 0.91659 0.90159 0.91840 0.92356 0.89584 0.92267 0.90792 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.89 101.05 1.10 1.30 16 2 O -0.41 -3.47 10.76 -59.04 -0.64 -4.10 16 3 C 0.21 1.45 7.07 101.05 0.71 2.16 16 4 O -0.40 -3.59 10.40 -59.04 -0.61 -4.20 16 5 C 0.06 0.52 5.82 37.16 0.22 0.74 16 6 C -0.11 -0.97 5.64 -26.73 -0.15 -1.12 16 7 C 0.02 0.22 4.81 -3.82 -0.02 0.20 16 8 N -0.48 -5.34 6.26 -241.63 -1.51 -6.85 16 9 C 0.06 0.83 6.41 -3.02 -0.02 0.81 16 10 C -0.14 -1.71 3.03 -154.98 -0.47 -2.18 16 11 C -0.11 -1.37 10.24 -26.99 -0.28 -1.65 16 12 C -0.17 -2.39 5.94 -92.03 -0.55 -2.94 16 13 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 14 C 0.56 10.11 7.84 -10.98 -0.09 10.02 16 15 O -0.56 -11.44 15.86 5.56 0.09 -11.35 16 16 N -0.64 -12.10 3.61 -178.43 -0.64 -12.74 16 17 C 0.12 2.33 8.39 -2.97 -0.02 2.30 16 18 C -0.01 -0.26 2.90 -90.84 -0.26 -0.52 16 19 C -0.51 -13.17 9.32 -34.44 -0.32 -13.49 16 20 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 21 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 22 N -0.89 -25.52 13.96 55.43 0.77 -24.75 16 23 Si 0.87 19.69 27.17 -169.99 -4.62 15.07 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.26 -5.67 6.25 56.52 0.35 -5.32 16 26 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 27 C 0.09 1.66 7.47 -2.97 -0.02 1.63 16 28 C 0.04 0.46 7.11 -3.01 -0.02 0.44 16 29 H 0.05 0.34 8.03 -51.93 -0.42 -0.08 16 30 H 0.04 0.20 8.11 -51.93 -0.42 -0.22 16 31 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.09 0.44 8.01 -51.93 -0.42 0.02 16 33 H 0.09 0.47 8.01 -51.93 -0.42 0.05 16 34 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 35 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16 36 H 0.07 0.63 7.54 -51.93 -0.39 0.24 16 37 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.41 7.70 -51.93 -0.40 0.01 16 40 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.08 1.09 7.66 -51.93 -0.40 0.69 16 42 H 0.11 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.08 1.57 8.09 -51.93 -0.42 1.15 16 46 H 0.06 1.40 6.58 -51.93 -0.34 1.05 16 47 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.09 1.63 8.09 -51.93 -0.42 1.21 16 49 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 50 H 0.07 0.74 7.79 -51.92 -0.40 0.34 16 51 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 416.33 15.07 6.27 6.27 Total: -1.00 -30.66 416.33 -10.29 -40.96 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -9.12 Total: 2.05 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.29 Total: -0.35 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -1.38 Total: -44.34 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -1.16 Total: -19.66 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.62 Total: 15.07 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -30.66 -10.29 -40.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277683034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.525 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds