Wall clock time and date at job start Tue Mar 31 2020 21:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99944 * 2 1 4 4 C 1.52999 * 109.47017 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47039 * 179.97438 * 4 3 2 6 6 N 1.46903 * 109.47033 * 180.02562 * 5 4 3 7 7 C 1.48149 * 110.99791 * 170.00119 * 6 5 4 8 8 C 1.52933 * 85.87544 * 223.05937 * 7 6 5 9 9 C 1.48148 * 111.00196 * 70.44552 * 6 5 4 10 10 C 1.54008 * 115.14708 * 266.61316 * 8 7 6 11 11 C 1.55627 * 100.83230 * 194.55467 * 10 8 7 12 12 C 1.54467 * 102.30409 * 33.01113 * 11 10 8 13 13 H 1.08999 * 109.83299 * 98.29951 * 12 11 10 14 14 C 1.50693 * 109.83206 * 219.19019 * 12 11 10 15 15 O 1.21284 * 120.00310 * 114.81265 * 14 12 11 16 16 N 1.34780 * 120.00205 * 294.80736 * 14 12 11 17 17 C 1.47579 * 134.49439 * 180.02562 * 16 14 12 18 18 C 1.53950 * 86.11621 * 204.63969 * 17 16 14 19 19 C 1.50698 * 113.74185 * 221.94108 * 18 17 16 20 20 H 1.08004 * 119.99782 * 358.07289 * 19 18 17 21 21 C 1.37878 * 120.00154 * 178.07233 * 19 18 17 22 22 N 1.31517 * 119.99673 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47187 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47173 * 120.00104 * 23 21 19 26 26 H 1.48498 * 109.47243 * 240.00594 * 23 21 19 27 27 C 1.47925 * 134.49772 * 0.02562 * 16 14 12 28 28 O 1.42547 * 116.18810 * 141.15460 * 8 7 6 29 29 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46979 * 299.99670 * 1 2 3 31 31 H 1.09001 * 109.47382 * 60.00134 * 1 2 3 32 32 H 1.09000 * 109.47096 * 59.99714 * 3 2 1 33 33 H 1.08998 * 109.46793 * 300.00217 * 3 2 1 34 34 H 1.09006 * 109.46956 * 59.99991 * 4 3 2 35 35 H 1.08998 * 109.47569 * 299.99806 * 4 3 2 36 36 H 1.08993 * 109.47645 * 59.99876 * 5 4 3 37 37 H 1.09005 * 109.47198 * 299.99760 * 5 4 3 38 38 H 1.08994 * 113.80934 * 108.82020 * 7 6 5 39 39 H 1.09005 * 113.91899 * 337.30602 * 7 6 5 40 40 H 1.09001 * 113.80855 * 22.69533 * 9 6 5 41 41 H 1.08996 * 113.80887 * 251.17109 * 9 6 5 42 42 H 1.09005 * 111.14967 * 312.37977 * 10 8 7 43 43 H 1.08999 * 111.16071 * 76.57418 * 10 8 7 44 44 H 1.09002 * 110.81330 * 274.83794 * 11 10 8 45 45 H 1.09004 * 110.90605 * 151.22766 * 11 10 8 46 46 H 1.09003 * 113.77049 * 90.34034 * 17 16 14 47 47 H 1.08993 * 113.77081 * 318.93795 * 17 16 14 48 48 H 1.09002 * 113.74276 * 90.74001 * 18 17 16 49 49 H 0.96999 * 119.99516 * 179.97438 * 22 21 19 50 50 H 1.09006 * 113.87423 * 41.10256 * 27 16 14 51 51 H 1.08997 * 113.77410 * 269.60428 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6222 2.4664 0.0000 7 6 6.2589 3.7822 -0.2408 8 6 7.2035 3.0296 -1.1789 9 6 6.1149 1.9624 -1.3031 10 6 8.5187 2.5501 -0.5369 11 6 9.3530 2.2025 -1.8038 12 6 8.8490 3.2451 -2.8261 13 1 9.5442 4.0833 -2.8727 14 6 8.7239 2.6085 -4.1862 15 8 7.6331 2.4930 -4.7037 16 7 9.8242 2.1676 -4.8277 17 6 10.0714 1.5150 -6.1281 18 6 11.3521 0.9533 -5.4843 19 6 12.5551 0.9938 -6.3911 20 1 12.4576 1.3634 -7.4012 21 6 13.7800 0.5591 -5.9312 22 7 13.8985 0.1087 -4.7012 23 14 15.2710 0.6087 -7.0554 24 1 14.8752 1.1535 -8.3789 25 1 16.3149 1.4776 -6.4551 26 1 15.8084 -0.7652 -7.2258 27 6 11.2690 2.1434 -4.5113 28 8 7.5632 3.7031 -2.3826 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.8574 0.6435 -0.8892 35 1 3.8568 0.6439 0.8908 36 1 3.8358 3.1239 0.8894 37 1 3.8364 3.1227 -0.8905 38 1 6.7514 4.1999 0.6373 39 1 5.6137 4.4991 -0.7485 40 1 5.4249 2.1317 -2.1297 41 1 6.4935 0.9410 -1.2651 42 1 8.9904 3.3482 0.0364 43 1 8.3556 1.6679 0.0823 44 1 9.1365 1.1899 -2.1444 45 1 10.4189 2.3293 -1.6145 46 1 10.2596 2.2150 -6.9422 47 1 9.3367 0.7515 -6.3832 48 1 11.2137 -0.0159 -5.0051 49 1 14.7602 -0.1975 -4.3778 50 1 11.4897 1.8811 -3.4766 51 1 11.8082 3.0275 -4.8515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277702597.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:15 Heat of formation + Delta-G solvation = -56.512911 kcal Electronic energy + Delta-G solvation = -29717.536780 eV Core-core repulsion = 25619.435416 eV Total energy + Delta-G solvation = -4098.101364 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.13422 -39.42167 -38.34816 -37.70902 -36.49999 -33.58599 -32.75539 -32.18387 -29.99299 -28.73736 -27.21430 -26.51044 -25.97655 -25.14369 -24.76157 -23.12218 -22.26342 -21.40250 -20.27767 -19.34425 -18.26752 -17.25297 -17.00277 -16.68445 -16.49077 -16.27397 -16.14717 -15.56887 -15.37298 -15.09899 -14.84166 -14.59945 -14.34085 -13.87305 -13.70040 -13.25844 -13.07459 -13.00948 -12.69957 -12.41700 -12.35393 -12.18239 -12.00238 -11.86582 -11.60539 -11.55345 -11.48459 -11.35317 -11.27053 -11.15558 -10.99762 -10.88192 -10.75505 -10.58785 -10.43739 -10.02612 -9.92324 -9.47217 -9.26887 -9.12388 -8.78774 -8.59867 -7.86573 -6.21488 -4.26682 3.04378 3.20590 3.22268 3.29926 3.32696 3.37240 3.75235 3.87880 4.29241 4.31017 4.53115 4.56474 4.59745 4.76295 4.80042 4.86853 4.92559 4.99308 5.03030 5.06040 5.09876 5.11647 5.16099 5.28710 5.32611 5.35304 5.37442 5.47066 5.53835 5.69191 5.73733 5.76894 5.85952 5.88251 5.92788 6.03213 6.07907 6.09080 6.18639 6.26878 6.37155 6.53601 6.60784 6.73248 6.76441 6.82489 7.02797 7.52215 7.76505 8.13625 8.48412 8.75966 8.76970 9.40404 10.88184 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019538 B = 0.002029 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.783807 B =13794.301071 C =14274.640150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.116 4.116 5 C 0.027 3.973 6 N -0.473 5.473 7 C 0.016 3.984 8 C 0.076 3.924 9 C -0.004 4.004 10 C -0.121 4.121 11 C -0.141 4.141 12 C 0.071 3.929 13 H 0.102 0.898 14 C 0.514 3.486 15 O -0.551 6.551 16 N -0.639 5.639 17 C 0.104 3.896 18 C 0.034 3.966 19 C -0.519 4.519 20 H 0.064 0.936 21 C 0.068 3.932 22 N -0.886 5.886 23 Si 0.895 3.105 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.103 3.897 28 O -0.337 6.337 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.064 0.936 49 H 0.263 0.737 50 H 0.066 0.934 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.201 5.367 13.107 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.154 4.154 5 C -0.102 4.102 6 N -0.197 5.197 7 C -0.113 4.113 8 C 0.036 3.964 9 C -0.133 4.133 10 C -0.158 4.158 11 C -0.179 4.179 12 C 0.010 3.990 13 H 0.120 0.880 14 C 0.302 3.698 15 O -0.430 6.430 16 N -0.375 5.375 17 C -0.017 4.017 18 C 0.015 3.985 19 C -0.557 4.557 20 H 0.082 0.918 21 C -0.136 4.136 22 N -0.523 5.523 23 Si 0.722 3.278 24 H -0.196 1.196 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.019 4.019 28 O -0.254 6.254 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.112 0.888 42 H 0.103 0.897 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.114 0.886 46 H 0.092 0.908 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.084 0.916 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.714 4.940 13.564 22.851 hybrid contribution 0.459 0.678 -1.207 1.459 sum -17.255 5.618 12.356 21.954 Atomic orbital electron populations 1.22743 0.80986 1.02832 0.99932 1.87887 1.19738 1.28025 1.95411 1.22486 0.94119 0.84683 1.00113 1.21425 0.92451 0.97187 1.04289 1.22499 0.89378 0.96804 1.01490 1.68516 1.06992 1.13668 1.30516 1.24084 0.96077 0.92835 0.98304 1.23486 0.94732 0.92850 0.85354 1.24383 0.97028 1.00438 0.91410 1.22884 0.92976 1.02643 0.97342 1.23148 1.01654 0.99570 0.93540 1.22607 0.86105 0.97671 0.92653 0.87998 1.20463 0.83786 0.78392 0.87145 1.90633 1.26517 1.57309 1.68553 1.50541 1.07368 1.58545 1.21047 1.23483 0.97725 0.94728 0.85803 1.20492 0.91091 0.94023 0.92902 1.21018 0.92500 1.43305 0.98873 0.91823 1.25014 0.99103 0.94309 0.95140 1.69952 1.24953 1.41813 1.15622 0.86491 0.82506 0.77819 0.80957 1.19592 1.20923 1.20887 1.23821 0.75778 1.01135 1.01202 1.88386 1.34805 1.61928 1.40279 0.89563 0.94117 0.94052 0.93268 0.93348 0.90870 0.90158 0.90330 0.93741 0.88381 0.90274 0.89950 0.88844 0.89736 0.88795 0.89811 0.88590 0.90821 0.92127 0.91834 0.92706 0.91598 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.06 10.70 -35.23 -0.38 -4.43 16 3 C 0.06 0.54 5.94 37.16 0.22 0.76 16 4 C -0.12 -1.10 5.65 -26.73 -0.15 -1.25 16 5 C 0.03 0.25 4.82 -3.82 -0.02 0.23 16 6 N -0.47 -5.10 6.25 -243.53 -1.52 -6.62 16 7 C 0.02 0.16 7.53 -3.17 -0.02 0.14 16 8 C 0.08 0.98 1.48 -90.27 -0.13 0.84 16 9 C 0.00 -0.05 6.60 -3.16 -0.02 -0.07 16 10 C -0.12 -1.36 6.39 -24.81 -0.16 -1.52 16 11 C -0.14 -1.90 5.82 -24.56 -0.14 -2.04 16 12 C 0.07 1.12 3.74 -27.12 -0.10 1.02 16 13 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 14 C 0.51 10.26 7.26 -10.99 -0.08 10.18 16 15 O -0.55 -12.88 17.25 -14.06 -0.24 -13.12 16 16 N -0.64 -12.84 3.60 -178.12 -0.64 -13.49 16 17 C 0.10 2.16 8.39 -2.97 -0.02 2.14 16 18 C 0.03 0.78 3.60 -90.84 -0.33 0.45 16 19 C -0.52 -12.92 8.77 -34.44 -0.30 -13.23 16 20 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 21 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -23.39 13.29 55.43 0.74 -22.65 16 23 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 C 0.10 2.07 7.97 -2.77 -0.02 2.04 16 28 O -0.34 -5.46 10.37 -54.85 -0.57 -6.03 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.79 7.54 -51.93 -0.39 0.40 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.42 7.71 -51.93 -0.40 0.02 16 38 H 0.10 0.87 8.11 -51.93 -0.42 0.45 16 39 H 0.08 0.82 7.80 -51.93 -0.41 0.42 16 40 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 41 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 44 H 0.08 1.25 7.84 -51.93 -0.41 0.84 16 45 H 0.10 1.19 7.52 -51.93 -0.39 0.80 16 46 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 49 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 50 H 0.07 1.27 7.00 -51.93 -0.36 0.91 16 51 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 LS Contribution 412.07 15.07 6.21 6.21 Total: -1.00 -30.11 412.07 -10.75 -40.87 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -9.06 Total: 1.88 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -0.27 Total: 2.66 kcal Atomic # 7 Polarization: -41.33 SS G_CDS: -1.43 Total: -42.75 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -1.19 Total: -23.59 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -30.11 -10.75 -40.87 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277702597.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.645 kcal (2) G-P(sol) polarization free energy of solvation -30.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds