Wall clock time and date at job start Tue Mar 31 2020 21:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00308 * 2 1 4 4 C 1.53002 * 112.84960 * 294.99966 * 3 2 1 5 5 C 1.50695 * 109.46984 * 290.25317 * 4 3 2 6 6 O 1.21282 * 120.00278 * 5.53396 * 5 4 3 7 7 N 1.34778 * 119.99887 * 185.53854 * 5 4 3 8 8 C 1.47078 * 120.89508 * 179.97438 * 7 5 4 9 9 C 1.53207 * 108.52510 * 231.00886 * 8 7 5 10 10 H 1.09007 * 109.46165 * 186.27566 * 9 8 7 11 11 C 1.52990 * 109.45594 * 66.32463 * 9 8 7 12 12 O 1.43021 * 109.32743 * 296.26477 * 11 9 8 13 13 C 1.43025 * 113.59842 * 300.96654 * 12 11 9 14 14 C 1.52987 * 109.29375 * 59.05982 * 13 12 11 15 15 H 1.09002 * 109.46698 * 183.61289 * 14 13 12 16 16 C 1.47079 * 120.89673 * 359.72139 * 7 5 4 17 17 N 1.46917 * 109.41752 * 306.22413 * 9 8 7 18 18 C 1.46896 * 111.00013 * 298.62638 * 17 9 8 19 19 C 1.50708 * 109.47004 * 176.38362 * 18 17 9 20 20 H 1.08004 * 119.99392 * 4.26055 * 19 18 17 21 21 C 1.37866 * 120.00070 * 184.26965 * 19 18 17 22 22 N 1.31521 * 120.00259 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00057 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47178 * 90.00491 * 23 21 19 25 25 H 1.48509 * 109.47344 * 210.00245 * 23 21 19 26 26 H 1.48500 * 109.47279 * 330.00212 * 23 21 19 27 27 C 1.53784 * 113.68864 * 66.26569 * 3 2 1 28 28 C 1.53783 * 87.07947 * 89.12860 * 27 3 2 29 29 C 1.53775 * 87.08275 * 25.43378 * 28 27 3 30 30 H 1.09001 * 109.47599 * 305.54947 * 1 2 3 31 31 H 1.09007 * 109.47250 * 65.54823 * 1 2 3 32 32 H 1.09000 * 109.47303 * 185.54353 * 1 2 3 33 33 H 1.09003 * 109.46963 * 170.25121 * 4 3 2 34 34 H 1.08999 * 109.47152 * 50.25303 * 4 3 2 35 35 H 1.08998 * 109.63062 * 350.72689 * 8 7 5 36 36 H 1.09005 * 109.62362 * 111.30447 * 8 7 5 37 37 H 1.08997 * 109.49040 * 56.22414 * 11 9 8 38 38 H 1.09004 * 109.49154 * 176.30715 * 11 9 8 39 39 H 1.09000 * 109.49816 * 299.11455 * 13 12 11 40 40 H 1.08998 * 109.52695 * 179.02278 * 13 12 11 41 41 H 1.09003 * 109.61822 * 248.73774 * 16 7 5 42 42 H 1.08996 * 109.62234 * 9.28744 * 16 7 5 43 43 H 1.09002 * 109.47298 * 296.37633 * 18 17 9 44 44 H 1.08998 * 109.47321 * 56.38108 * 18 17 9 45 45 H 0.96999 * 119.99945 * 179.97438 * 22 21 19 46 46 H 1.09000 * 113.61524 * 203.67761 * 27 3 2 47 47 H 1.09000 * 113.61418 * 334.57965 * 27 3 2 48 48 H 1.08995 * 113.61622 * 270.88084 * 28 27 3 49 49 H 1.08998 * 113.61111 * 139.98170 * 28 27 3 50 50 H 1.08993 * 113.61487 * 220.02265 * 29 28 27 51 51 H 1.09005 * 113.61853 * 89.11154 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7076 2.0906 -1.2779 5 6 2.4537 1.4757 -2.4338 6 8 3.0774 0.4477 -2.2750 7 7 2.4280 2.0682 -3.6441 8 6 3.1495 1.4855 -4.7856 9 6 4.0167 2.5767 -5.4216 10 1 4.4721 2.1927 -6.3345 11 6 5.1147 2.9915 -4.4403 12 8 4.5164 3.5744 -3.2793 13 6 3.7143 4.7237 -3.5643 14 6 2.5964 4.3324 -4.5327 15 1 2.0222 5.2190 -4.8020 16 6 1.6731 3.3119 -3.8602 17 7 3.1793 3.7400 -5.7442 18 6 2.1330 3.3833 -6.7117 19 6 1.2419 4.5751 -6.9501 20 1 1.4737 5.5235 -6.4882 21 6 0.1310 4.4547 -7.7577 22 7 -0.6469 5.4947 -7.9654 23 14 -0.2694 2.8145 -8.5568 24 1 -1.1467 2.0255 -7.6551 25 1 -0.9680 3.0494 -9.8461 26 1 0.9881 2.0645 -8.8048 27 6 1.7437 2.1004 1.2892 28 6 3.0294 1.4701 1.8502 29 6 3.4969 1.3178 0.3931 30 1 -0.3634 0.5975 0.8361 31 1 -0.3634 0.4254 -0.9355 32 1 -0.3634 -1.0228 0.0993 33 1 2.0231 3.1262 -1.1513 34 1 0.6367 2.0590 -1.4786 35 1 3.7834 0.6690 -4.4400 36 1 2.4344 1.1125 -5.5188 37 1 5.6933 2.1146 -4.1501 38 1 5.7713 3.7201 -4.9159 39 1 4.3345 5.4969 -4.0178 40 1 3.2787 5.1024 -2.6397 41 1 0.8167 3.1129 -4.5045 42 1 1.3308 3.7034 -2.9024 43 1 2.5949 3.0813 -7.6516 44 1 1.5391 2.5588 -6.3172 45 1 -1.4283 5.4100 -8.5338 46 1 1.8085 3.1805 1.1574 47 1 0.8403 1.7905 1.8144 48 1 2.8643 0.5195 2.3574 49 1 3.6365 2.1623 2.4334 50 1 4.0087 0.3761 0.1950 51 1 4.0409 2.1839 0.0163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277936434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:56 Heat of formation + Delta-G solvation = -67.173179 kcal Electronic energy + Delta-G solvation = -32846.774850 eV Core-core repulsion = 28748.211222 eV Total energy + Delta-G solvation = -4098.563628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.94543 -40.05922 -38.08044 -36.01078 -35.58659 -33.98597 -32.95191 -32.26671 -30.32745 -28.90326 -27.16607 -26.57271 -25.96140 -25.51907 -24.98038 -23.20198 -22.33509 -21.51328 -19.88902 -19.32802 -17.71496 -17.21214 -16.83416 -16.46294 -16.00211 -15.77032 -15.66933 -15.35408 -15.18163 -14.92044 -14.53877 -14.45967 -14.20462 -14.16257 -13.83377 -13.71348 -13.26433 -13.15538 -12.87025 -12.41363 -12.31455 -12.05750 -11.91036 -11.75866 -11.64652 -11.44403 -11.38010 -11.06417 -10.96163 -10.88583 -10.85647 -10.80701 -10.66575 -10.20327 -10.14921 -9.94751 -9.54831 -9.42157 -9.25522 -9.19270 -8.74053 -8.56014 -7.27926 -6.20800 -4.20191 3.03241 3.17338 3.25838 3.27351 3.29003 3.67093 4.13986 4.28595 4.34268 4.44970 4.52654 4.67850 4.78559 4.94515 5.08440 5.12688 5.14852 5.18256 5.21899 5.23883 5.29844 5.38676 5.41361 5.48285 5.50680 5.59488 5.63058 5.64677 5.68471 5.74923 5.78149 5.84091 5.86670 5.97539 6.04680 6.06916 6.14292 6.17875 6.19913 6.23685 6.36795 6.67499 6.83039 6.88761 7.26098 7.37894 7.43539 7.64341 7.79597 7.84305 8.45569 8.58347 8.83482 9.40463 10.91284 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.004001 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.431660 B = 6996.106338 C = 7747.514648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.112 3.888 4 C -0.155 4.155 5 C 0.529 3.471 6 O -0.538 6.538 7 N -0.596 5.596 8 C 0.088 3.912 9 C 0.030 3.970 10 H 0.095 0.905 11 C 0.078 3.922 12 O -0.378 6.378 13 C 0.067 3.933 14 C 0.045 3.955 15 H 0.120 0.880 16 C 0.083 3.917 17 N -0.512 5.512 18 C 0.158 3.842 19 C -0.518 4.518 20 H 0.083 0.917 21 C 0.074 3.926 22 N -0.895 5.895 23 Si 0.872 3.128 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.267 1.267 27 C -0.165 4.165 28 C -0.138 4.138 29 C -0.110 4.110 30 H 0.042 0.958 31 H 0.039 0.961 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.030 0.970 44 H -0.008 1.008 45 H 0.265 0.735 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.081 0.919 49 H 0.067 0.933 50 H 0.081 0.919 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -5.167 15.751 17.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.266 6.266 3 C 0.072 3.928 4 C -0.195 4.195 5 C 0.317 3.683 6 O -0.415 6.415 7 N -0.329 5.329 8 C -0.036 4.036 9 C -0.080 4.080 10 H 0.113 0.887 11 C 0.000 4.000 12 O -0.296 6.296 13 C -0.010 4.010 14 C -0.065 4.065 15 H 0.138 0.862 16 C -0.042 4.042 17 N -0.235 5.235 18 C 0.032 3.968 19 C -0.556 4.556 20 H 0.100 0.900 21 C -0.128 4.128 22 N -0.533 5.533 23 Si 0.699 3.301 24 H -0.204 1.204 25 H -0.211 1.211 26 H -0.192 1.192 27 C -0.203 4.203 28 C -0.175 4.175 29 C -0.147 4.147 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.010 0.990 45 H 0.075 0.925 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.100 0.900 49 H 0.086 0.914 50 H 0.100 0.900 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.996 -5.537 15.692 17.687 hybrid contribution -1.436 -0.961 -0.774 1.893 sum 4.560 -6.498 14.918 16.898 Atomic orbital electron populations 1.22745 0.81975 1.02474 0.99926 1.88019 1.18755 1.25274 1.94503 1.22212 0.96010 0.83509 0.91102 1.22177 1.01671 1.01250 0.94436 1.20108 0.81004 0.84252 0.82926 1.90654 1.43710 1.23977 1.83181 1.47864 1.50313 1.25444 1.09309 1.22095 0.96273 0.97105 0.88169 1.22685 0.95379 0.91428 0.98554 0.88746 1.22507 0.93607 0.97715 0.86133 1.87943 1.66015 1.44663 1.30988 1.22695 0.92081 0.87981 0.98268 1.22598 0.94901 0.99035 0.89972 0.86192 1.22355 0.95552 0.84957 1.01307 1.62251 1.23853 1.26631 1.10754 1.20252 0.89231 0.96632 0.90654 1.20998 1.07557 0.96662 1.30417 0.89955 1.24860 0.95909 0.96210 0.95856 1.69877 1.15575 1.29604 1.38270 0.86915 0.78988 0.84737 0.79437 1.20358 1.21057 1.19152 1.23585 0.99044 1.00303 0.97348 1.22798 0.96840 1.00933 0.96946 1.22853 0.93899 1.03516 0.94444 0.93975 0.94192 0.89763 0.88121 0.89229 0.89244 0.91675 0.89347 0.92734 0.92594 0.89455 0.89957 0.90392 0.95158 0.99024 0.92493 0.89176 0.91069 0.90044 0.91409 0.90046 0.89058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.55 101.05 1.07 1.34 16 2 O -0.35 -4.94 10.13 -43.01 -0.44 -5.38 16 3 C 0.11 1.40 0.38 -89.80 -0.03 1.37 16 4 C -0.16 -2.00 3.62 -27.88 -0.10 -2.10 16 5 C 0.53 8.65 7.09 -10.99 -0.08 8.57 16 6 O -0.54 -10.31 14.31 -2.22 -0.03 -10.35 16 7 N -0.60 -9.79 1.81 -172.53 -0.31 -10.10 16 8 C 0.09 1.47 5.39 -3.62 -0.02 1.45 16 9 C 0.03 0.48 2.99 -67.60 -0.20 0.28 16 10 H 0.09 1.44 8.14 -51.92 -0.42 1.02 16 11 C 0.08 1.13 6.39 37.15 0.24 1.37 16 12 O -0.38 -5.81 9.21 -35.23 -0.32 -6.13 16 13 C 0.07 0.96 6.39 37.15 0.24 1.20 16 14 C 0.04 0.75 2.61 -67.62 -0.18 0.58 16 15 H 0.12 2.26 6.03 -51.93 -0.31 1.94 16 16 C 0.08 1.33 5.30 -3.64 -0.02 1.31 16 17 N -0.51 -9.58 4.76 -219.89 -1.05 -10.62 16 18 C 0.16 3.47 3.17 -4.97 -0.02 3.46 16 19 C -0.52 -13.26 8.87 -34.44 -0.31 -13.57 16 20 H 0.08 2.26 6.53 -52.48 -0.34 1.92 16 21 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 22 N -0.90 -25.65 13.96 55.43 0.77 -24.88 16 23 Si 0.87 20.44 27.38 -169.99 -4.66 15.79 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.27 -6.07 6.67 56.52 0.38 -5.69 16 27 C -0.17 -1.60 7.18 -25.92 -0.19 -1.79 16 28 C -0.14 -1.37 8.02 -25.92 -0.21 -1.58 16 29 C -0.11 -1.37 6.23 -25.92 -0.16 -1.53 16 30 H 0.04 0.38 6.60 -51.93 -0.34 0.04 16 31 H 0.04 0.44 6.89 -51.93 -0.36 0.09 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.10 1.14 7.22 -51.93 -0.37 0.76 16 34 H 0.09 1.08 6.71 -51.93 -0.35 0.73 16 35 H 0.09 1.50 7.06 -51.93 -0.37 1.13 16 36 H 0.07 1.16 6.68 -51.93 -0.35 0.81 16 37 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.08 1.54 6.92 -51.93 -0.36 1.18 16 42 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 43 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 44 H -0.01 -0.17 4.35 -51.93 -0.23 -0.40 16 45 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.09 0.76 7.98 -51.93 -0.41 0.34 16 47 H 0.07 0.64 6.74 -51.93 -0.35 0.29 16 48 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 50 H 0.08 1.18 8.06 -51.93 -0.42 0.76 16 51 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -30.88 374.86 -8.67 -39.55 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -8.22 Total: 4.20 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -0.06 Total: 2.26 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: -0.58 Total: -45.60 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.79 Total: -21.86 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.66 Total: 15.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.88 -8.67 -39.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.622 kcal (2) G-P(sol) polarization free energy of solvation -30.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds