Wall clock time and date at job start Tue Mar 31 2020 21:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00308 * 2 1 4 4 C 1.53002 * 112.84960 * 294.99966 * 3 2 1 5 5 C 1.50695 * 109.46984 * 290.25317 * 4 3 2 6 6 O 1.21282 * 120.00278 * 5.53396 * 5 4 3 7 7 N 1.34778 * 119.99887 * 185.53854 * 5 4 3 8 8 C 1.47078 * 120.89508 * 179.97438 * 7 5 4 9 9 C 1.53207 * 108.52510 * 231.00886 * 8 7 5 10 10 H 1.09007 * 109.46165 * 186.27566 * 9 8 7 11 11 C 1.52990 * 109.45594 * 66.32463 * 9 8 7 12 12 O 1.43021 * 109.32743 * 296.26477 * 11 9 8 13 13 C 1.43025 * 113.59842 * 300.96654 * 12 11 9 14 14 C 1.52987 * 109.29375 * 59.05982 * 13 12 11 15 15 H 1.09002 * 109.46698 * 183.61289 * 14 13 12 16 16 C 1.47079 * 120.89673 * 359.72139 * 7 5 4 17 17 N 1.46917 * 109.41752 * 306.22413 * 9 8 7 18 18 C 1.46896 * 111.00013 * 298.62638 * 17 9 8 19 19 C 1.50708 * 109.47004 * 176.38362 * 18 17 9 20 20 H 1.08004 * 119.99392 * 4.26055 * 19 18 17 21 21 C 1.37866 * 120.00070 * 184.26965 * 19 18 17 22 22 N 1.31521 * 120.00259 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 120.00057 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47178 * 90.00491 * 23 21 19 25 25 H 1.48509 * 109.47344 * 210.00245 * 23 21 19 26 26 H 1.48500 * 109.47279 * 330.00212 * 23 21 19 27 27 C 1.53784 * 113.68864 * 66.26569 * 3 2 1 28 28 C 1.53783 * 87.07947 * 89.12860 * 27 3 2 29 29 C 1.53775 * 87.08275 * 25.43378 * 28 27 3 30 30 H 1.09001 * 109.47599 * 305.54947 * 1 2 3 31 31 H 1.09007 * 109.47250 * 65.54823 * 1 2 3 32 32 H 1.09000 * 109.47303 * 185.54353 * 1 2 3 33 33 H 1.09003 * 109.46963 * 170.25121 * 4 3 2 34 34 H 1.08999 * 109.47152 * 50.25303 * 4 3 2 35 35 H 1.08998 * 109.63062 * 350.72689 * 8 7 5 36 36 H 1.09005 * 109.62362 * 111.30447 * 8 7 5 37 37 H 1.08997 * 109.49040 * 56.22414 * 11 9 8 38 38 H 1.09004 * 109.49154 * 176.30715 * 11 9 8 39 39 H 1.09000 * 109.49816 * 299.11455 * 13 12 11 40 40 H 1.08998 * 109.52695 * 179.02278 * 13 12 11 41 41 H 1.09003 * 109.61822 * 248.73774 * 16 7 5 42 42 H 1.08996 * 109.62234 * 9.28744 * 16 7 5 43 43 H 1.09002 * 109.47298 * 296.37633 * 18 17 9 44 44 H 1.08998 * 109.47321 * 56.38108 * 18 17 9 45 45 H 0.96999 * 119.99945 * 179.97438 * 22 21 19 46 46 H 1.09000 * 113.61524 * 203.67761 * 27 3 2 47 47 H 1.09000 * 113.61418 * 334.57965 * 27 3 2 48 48 H 1.08995 * 113.61622 * 270.88084 * 28 27 3 49 49 H 1.08998 * 113.61111 * 139.98170 * 28 27 3 50 50 H 1.08993 * 113.61487 * 220.02265 * 29 28 27 51 51 H 1.09005 * 113.61853 * 89.11154 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 1.7076 2.0906 -1.2779 5 6 2.4537 1.4757 -2.4338 6 8 3.0774 0.4477 -2.2750 7 7 2.4280 2.0682 -3.6441 8 6 3.1495 1.4855 -4.7856 9 6 4.0167 2.5767 -5.4216 10 1 4.4721 2.1927 -6.3345 11 6 5.1147 2.9915 -4.4403 12 8 4.5164 3.5744 -3.2793 13 6 3.7143 4.7237 -3.5643 14 6 2.5964 4.3324 -4.5327 15 1 2.0222 5.2190 -4.8020 16 6 1.6731 3.3119 -3.8602 17 7 3.1793 3.7400 -5.7442 18 6 2.1330 3.3833 -6.7117 19 6 1.2419 4.5751 -6.9501 20 1 1.4737 5.5235 -6.4882 21 6 0.1310 4.4547 -7.7577 22 7 -0.6469 5.4947 -7.9654 23 14 -0.2694 2.8145 -8.5568 24 1 -1.1467 2.0255 -7.6551 25 1 -0.9680 3.0494 -9.8461 26 1 0.9881 2.0645 -8.8048 27 6 1.7437 2.1004 1.2892 28 6 3.0294 1.4701 1.8502 29 6 3.4969 1.3178 0.3931 30 1 -0.3634 0.5975 0.8361 31 1 -0.3634 0.4254 -0.9355 32 1 -0.3634 -1.0228 0.0993 33 1 2.0231 3.1262 -1.1513 34 1 0.6367 2.0590 -1.4786 35 1 3.7834 0.6690 -4.4400 36 1 2.4344 1.1125 -5.5188 37 1 5.6933 2.1146 -4.1501 38 1 5.7713 3.7201 -4.9159 39 1 4.3345 5.4969 -4.0178 40 1 3.2787 5.1024 -2.6397 41 1 0.8167 3.1129 -4.5045 42 1 1.3308 3.7034 -2.9024 43 1 2.5949 3.0813 -7.6516 44 1 1.5391 2.5588 -6.3172 45 1 -1.4283 5.4100 -8.5338 46 1 1.8085 3.1805 1.1574 47 1 0.8403 1.7905 1.8144 48 1 2.8643 0.5195 2.3574 49 1 3.6365 2.1623 2.4334 50 1 4.0087 0.3761 0.1950 51 1 4.0409 2.1839 0.0163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277936434.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:55 Heat of formation + Delta-G solvation = -88.272483 kcal Electronic energy + Delta-G solvation = -32847.689785 eV Core-core repulsion = 28748.211222 eV Total energy + Delta-G solvation = -4099.478562 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.21792 -41.08203 -39.31763 -37.34581 -36.48966 -35.52484 -34.52302 -33.88949 -31.42049 -30.53965 -28.02515 -27.79913 -27.52104 -26.46255 -26.19142 -24.29579 -23.56672 -23.23170 -21.03729 -20.27943 -19.14840 -18.91200 -18.25450 -17.50563 -17.11510 -16.97150 -16.94628 -16.65578 -16.25062 -16.12831 -16.00314 -15.66539 -15.63336 -15.32726 -15.02540 -14.94411 -14.63264 -14.50248 -14.30946 -13.97637 -13.25264 -13.21779 -13.21381 -13.03041 -12.99297 -12.63874 -12.51065 -12.50098 -12.34214 -12.21741 -12.09822 -11.91724 -11.82759 -11.66801 -11.44953 -11.26209 -11.07667 -10.80666 -10.68613 -10.54980 -10.29179 -9.97621 -8.74206 -8.29221 -6.31378 1.29613 1.34326 1.41829 1.77518 2.00610 2.30872 2.78729 2.96658 3.02684 3.07041 3.38848 3.68515 3.72556 3.79956 3.82227 3.91280 3.96181 3.99701 4.13714 4.18261 4.34971 4.38707 4.40489 4.45364 4.48699 4.51351 4.58679 4.60009 4.63292 4.70321 4.74811 4.78802 4.81221 4.83538 4.84964 4.90069 4.97043 5.03745 5.07667 5.15440 5.20836 5.29726 5.43161 5.48962 5.53002 5.91632 6.21725 6.27649 6.38465 6.50646 6.57178 6.75026 7.30642 7.32642 8.85666 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014516 B = 0.004001 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.431660 B = 6996.106338 C = 7747.514648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.378 6.378 3 C 0.101 3.899 4 C -0.152 4.152 5 C 0.526 3.474 6 O -0.569 6.569 7 N -0.597 5.597 8 C 0.089 3.911 9 C 0.032 3.968 10 H 0.103 0.897 11 C 0.081 3.919 12 O -0.383 6.383 13 C 0.074 3.926 14 C 0.043 3.957 15 H 0.097 0.903 16 C 0.089 3.911 17 N -0.522 5.522 18 C 0.171 3.829 19 C -0.510 4.510 20 H 0.055 0.945 21 C 0.023 3.977 22 N -0.939 5.939 23 Si 0.928 3.072 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.255 1.255 27 C -0.150 4.150 28 C -0.129 4.129 29 C -0.117 4.117 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.123 0.877 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.118 0.882 41 H 0.052 0.948 42 H 0.110 0.890 43 H 0.023 0.977 44 H -0.009 1.009 45 H 0.266 0.734 46 H 0.110 0.890 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.050 0.950 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 -5.250 17.633 19.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.297 6.297 3 C 0.061 3.939 4 C -0.192 4.192 5 C 0.315 3.685 6 O -0.449 6.449 7 N -0.330 5.330 8 C -0.036 4.036 9 C -0.078 4.078 10 H 0.121 0.879 11 C 0.004 3.996 12 O -0.301 6.301 13 C -0.003 4.003 14 C -0.066 4.066 15 H 0.114 0.886 16 C -0.035 4.035 17 N -0.245 5.245 18 C 0.044 3.956 19 C -0.548 4.548 20 H 0.073 0.927 21 C -0.175 4.175 22 N -0.579 5.579 23 Si 0.754 3.246 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.179 1.179 27 C -0.188 4.188 28 C -0.167 4.167 29 C -0.154 4.154 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.110 0.890 33 H 0.141 0.859 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.067 0.933 37 H 0.120 0.880 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.136 0.864 41 H 0.071 0.929 42 H 0.128 0.872 43 H 0.041 0.959 44 H 0.008 0.992 45 H 0.075 0.925 46 H 0.128 0.872 47 H 0.100 0.900 48 H 0.094 0.906 49 H 0.105 0.895 50 H 0.069 0.931 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.421 -5.621 17.587 19.548 hybrid contribution -1.516 -0.924 -1.347 2.228 sum 4.905 -6.545 16.240 18.183 Atomic orbital electron populations 1.22887 0.80620 1.03483 1.00493 1.87979 1.20414 1.26590 1.94705 1.22402 0.95975 0.83449 0.92090 1.22259 1.01655 1.02165 0.93098 1.20750 0.80551 0.83761 0.83388 1.90645 1.45155 1.25408 1.83657 1.47937 1.50173 1.25446 1.09403 1.22022 0.96029 0.97358 0.88176 1.22777 0.95252 0.90270 0.99523 0.87910 1.22547 0.92960 0.98507 0.85560 1.87946 1.65992 1.44929 1.31237 1.22733 0.91044 0.87636 0.98862 1.22591 0.95952 0.98135 0.89938 0.88556 1.22260 0.94263 0.84690 1.02269 1.62153 1.23047 1.27832 1.11463 1.19951 0.89419 0.94789 0.91402 1.21194 1.07713 0.96809 1.29083 0.92718 1.25570 0.96061 0.99192 0.96723 1.70001 1.16466 1.31733 1.39749 0.86000 0.79152 0.81041 0.78441 1.19940 1.21021 1.17921 1.23552 0.99172 1.00970 0.95073 1.22752 0.97161 1.01267 0.95484 1.22868 0.93909 1.01959 0.96661 0.91789 0.94793 0.89031 0.85892 0.88264 0.89328 0.93251 0.88044 0.91781 0.92427 0.86414 0.92949 0.87212 0.95900 0.99184 0.92506 0.87186 0.90044 0.90553 0.89529 0.93124 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.55 113.37 1.20 1.62 16 2 O -0.38 -10.32 10.13 -141.54 -1.43 -11.76 16 3 C 0.10 2.32 0.38 -10.26 0.00 2.32 16 4 C -0.15 -3.54 3.62 29.85 0.11 -3.43 16 5 C 0.53 16.50 7.09 87.66 0.62 17.12 16 6 O -0.57 -21.62 14.31 4.40 0.06 -21.55 16 7 N -0.60 -18.93 1.81 -818.14 -1.48 -20.41 16 8 C 0.09 2.92 5.39 86.34 0.46 3.39 16 9 C 0.03 0.98 2.99 44.98 0.13 1.12 16 10 H 0.10 3.00 8.14 -2.38 -0.02 2.98 16 11 C 0.08 2.20 6.39 71.98 0.46 2.66 16 12 O -0.38 -10.78 9.21 -148.98 -1.37 -12.15 16 13 C 0.07 1.95 6.39 71.98 0.46 2.41 16 14 C 0.04 1.43 2.61 44.96 0.12 1.55 16 15 H 0.10 3.66 6.03 -2.39 -0.01 3.64 16 16 C 0.09 2.78 5.30 86.33 0.46 3.24 16 17 N -0.52 -19.23 4.76 -849.60 -4.04 -23.27 16 18 C 0.17 7.52 3.17 85.56 0.27 7.79 16 19 C -0.51 -26.55 8.87 25.60 0.23 -26.32 16 20 H 0.05 3.11 6.53 -2.91 -0.02 3.09 16 21 C 0.02 1.25 5.47 84.65 0.46 1.72 16 22 N -0.94 -54.97 13.96 21.44 0.30 -54.67 16 23 Si 0.93 42.34 27.38 68.60 1.88 44.22 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 26 H -0.26 -11.05 6.67 99.48 0.66 -10.39 16 27 C -0.15 -2.38 7.18 31.12 0.22 -2.16 16 28 C -0.13 -2.25 8.02 31.12 0.25 -2.00 16 29 C -0.12 -2.74 6.23 31.12 0.19 -2.55 16 30 H 0.06 0.98 6.60 -2.39 -0.02 0.96 16 31 H 0.03 0.71 6.89 -2.38 -0.02 0.69 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 2.29 7.22 -2.39 -0.02 2.27 16 34 H 0.10 2.14 6.71 -2.39 -0.02 2.12 16 35 H 0.09 2.93 7.06 -2.39 -0.02 2.91 16 36 H 0.05 1.76 6.68 -2.38 -0.02 1.74 16 37 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 41 H 0.05 1.95 6.92 -2.39 -0.02 1.94 16 42 H 0.11 2.66 5.96 -2.39 -0.01 2.64 16 43 H 0.02 1.04 7.49 -2.39 -0.02 1.03 16 44 H -0.01 -0.42 4.35 -2.39 -0.01 -0.43 16 45 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.11 1.33 7.98 -2.39 -0.02 1.31 16 47 H 0.08 1.15 6.74 -2.39 -0.02 1.14 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.09 1.18 8.14 -2.39 -0.02 1.17 16 50 H 0.05 1.48 8.06 -2.39 -0.02 1.46 16 51 H 0.09 2.10 8.10 -2.38 -0.02 2.08 16 Total: -1.00 -68.02 374.86 0.45 -67.57 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.89 Total: 23.56 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 5.64 Total: 8.45 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -5.22 Total: -98.34 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -2.74 Total: -45.46 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.88 Total: 44.22 kcal Total: -68.02 0.45 -67.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277936434.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.699 kcal (2) G-P(sol) polarization free energy of solvation -68.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds