Wall clock time and date at job start Tue Mar 31 2020 21:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00237 * 2 1 4 4 H 1.08999 * 109.51755 * 330.12971 * 3 2 1 5 5 C 1.53090 * 109.52056 * 90.31517 * 3 2 1 6 6 O 1.42904 * 109.41148 * 177.51641 * 5 3 2 7 7 C 1.42895 * 114.09849 * 298.84092 * 6 5 3 8 8 C 1.53093 * 109.41530 * 61.15971 * 7 6 5 9 9 C 1.53170 * 109.52209 * 210.00419 * 3 2 1 10 10 H 1.09000 * 109.54363 * 303.06931 * 9 3 2 11 11 C 1.52997 * 109.54647 * 63.24456 * 9 3 2 12 12 C 1.50703 * 109.47282 * 184.99736 * 11 9 3 13 13 O 1.21274 * 119.99817 * 0.02562 * 12 11 9 14 14 N 1.34774 * 120.00144 * 180.02562 * 12 11 9 15 15 C 1.46496 * 120.00301 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47398 * 180.02562 * 15 14 12 17 17 C 1.29454 * 117.69611 * 94.99914 * 16 15 14 18 18 C 1.50324 * 123.65103 * 180.88103 * 17 16 15 19 19 N 1.47007 * 109.16348 * 349.02303 * 18 17 16 20 20 C 1.36935 * 121.37181 * 222.94494 * 19 18 17 21 21 H 1.08002 * 119.99769 * 155.52868 * 20 19 18 22 22 C 1.38810 * 120.00591 * 335.53118 * 20 19 18 23 23 N 1.31628 * 119.99513 * 334.39892 * 22 20 19 24 24 Si 1.86796 * 120.00592 * 154.12555 * 22 20 19 25 25 H 1.48496 * 109.47348 * 180.27792 * 24 22 20 26 26 H 1.48499 * 109.46882 * 300.27550 * 24 22 20 27 27 H 1.48499 * 109.47122 * 60.27270 * 24 22 20 28 28 C 1.47332 * 117.25316 * 43.22217 * 19 18 17 29 29 C 1.49968 * 117.69200 * 275.01996 * 16 15 14 30 30 H 1.08998 * 109.47570 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46962 * 300.00003 * 1 2 3 32 32 H 1.08999 * 109.47615 * 59.99479 * 1 2 3 33 33 H 1.08999 * 109.48389 * 297.49590 * 5 3 2 34 34 H 1.08995 * 109.48078 * 57.53651 * 5 3 2 35 35 H 1.09002 * 109.48217 * 181.14061 * 7 6 5 36 36 H 1.08997 * 109.48606 * 301.17936 * 7 6 5 37 37 H 1.09000 * 109.52539 * 182.48320 * 8 7 6 38 38 H 1.09005 * 109.52182 * 62.29910 * 8 7 6 39 39 H 1.09004 * 109.47359 * 65.00213 * 11 9 3 40 40 H 1.08993 * 109.47404 * 304.99934 * 11 9 3 41 41 H 0.97009 * 119.99662 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.47131 * 59.99634 * 15 14 12 43 43 H 1.09005 * 109.46956 * 299.99776 * 15 14 12 44 44 H 1.07994 * 118.17498 * 0.85909 * 17 16 15 45 45 H 1.08994 * 109.52014 * 229.11675 * 18 17 16 46 46 H 1.09005 * 109.57078 * 108.95751 * 18 17 16 47 47 H 0.97000 * 119.99522 * 353.87107 * 23 22 20 48 48 H 1.09000 * 109.78253 * 57.53606 * 28 19 18 49 49 H 1.09005 * 109.78114 * 178.34777 * 28 19 18 50 50 H 1.09000 * 109.31713 * 281.26677 * 29 16 15 51 51 H 1.09001 * 109.31524 * 40.69618 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3445 2.0005 -0.5117 5 6 2.2256 1.7696 1.4429 6 8 2.8597 3.0502 1.4403 7 6 4.1471 3.0625 0.8203 8 6 4.0090 2.6503 -0.6477 9 6 3.3605 1.2645 -0.7219 10 1 4.0085 0.5311 -0.2420 11 6 3.1464 0.8775 -2.1865 12 6 4.4828 0.7178 -2.8645 13 8 5.5057 0.8957 -2.2378 14 7 4.5412 0.3775 -4.1673 15 6 5.8403 0.2217 -4.8262 16 6 5.6293 -0.1582 -6.2692 17 6 5.6299 0.7924 -7.1480 18 6 5.4132 0.5677 -8.6184 19 7 5.4725 -0.8739 -8.9001 20 6 6.1433 -1.3603 -9.9903 21 1 6.5172 -2.3735 -9.9865 22 6 6.3430 -0.5511 -11.1003 23 7 5.5159 0.4426 -11.3477 24 14 7.7898 -0.8674 -12.2388 25 1 7.7834 0.1323 -13.3369 26 1 9.0567 -0.7531 -11.4727 27 1 7.6794 -2.2329 -12.8119 28 6 4.7750 -1.7734 -7.9646 29 6 5.4330 -1.6108 -6.5859 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.2630 1.8417 1.9491 34 1 2.8582 1.0518 1.9650 35 1 4.5688 4.0660 0.8779 36 1 4.8049 2.3616 1.3342 37 1 4.9951 2.6164 -1.1109 38 1 3.3841 3.3735 -1.1718 39 1 2.5752 1.6581 -2.6889 40 1 2.5986 -0.0634 -2.2374 41 1 3.7229 0.2349 -4.6684 42 1 6.4111 -0.5594 -4.3241 43 1 6.3887 1.1624 -4.7750 44 1 5.7950 1.8033 -6.8055 45 1 6.1905 1.0816 -9.1838 46 1 4.4362 0.9554 -8.9070 47 1 4.7183 0.5555 -10.8073 48 1 3.7211 -1.5010 -7.9075 49 1 4.8722 -2.8050 -8.3030 50 1 6.3999 -2.1142 -6.5839 51 1 4.7933 -2.0619 -5.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279574072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:25 Heat of formation + Delta-G solvation = -100.327407 kcal Electronic energy + Delta-G solvation = -29706.555946 eV Core-core repulsion = 25606.554643 eV Total energy + Delta-G solvation = -4100.001303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.59383 -39.42956 -37.96946 -37.66800 -35.27534 -34.39681 -33.11948 -31.05636 -30.76752 -29.90800 -29.20074 -27.02953 -26.75870 -24.52790 -23.50192 -23.35384 -22.86194 -21.18574 -20.75738 -20.29816 -17.96779 -17.61613 -17.19714 -16.72431 -16.48620 -16.15274 -15.87542 -15.74388 -15.33097 -15.24684 -14.71396 -14.52171 -14.08316 -13.91687 -13.72716 -13.70194 -13.47929 -13.18472 -13.10357 -12.81499 -12.76956 -12.40994 -12.20360 -12.01003 -11.77177 -11.65395 -11.50650 -11.31442 -11.09202 -10.85570 -10.80050 -10.71344 -10.51798 -10.43002 -10.05714 -10.03628 -9.94501 -9.52882 -9.43843 -9.03208 -8.56465 -8.24414 -6.98935 -6.11483 -3.25001 2.42636 2.59196 3.12130 3.41184 3.47905 3.52045 3.67442 3.69538 4.27054 4.29786 4.43081 4.56195 4.63770 4.72467 4.86881 4.87907 4.93517 4.97811 5.00697 5.08516 5.17436 5.20303 5.23996 5.25734 5.31560 5.34773 5.48072 5.50466 5.53897 5.65706 5.69286 5.81983 5.89288 5.92951 5.95280 6.00912 6.16344 6.26583 6.43397 6.57483 6.58475 6.61134 6.82250 6.83005 6.90363 7.08599 7.46385 7.50632 7.91185 8.18624 8.50881 9.03553 9.78892 10.24068 11.17722 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.001943 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.606905 B =14406.137616 C =14915.528714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.378 6.378 3 C 0.059 3.941 4 H 0.071 0.929 5 C 0.043 3.957 6 O -0.380 6.380 7 C 0.058 3.942 8 C -0.154 4.154 9 C -0.068 4.068 10 H 0.089 0.911 11 C -0.135 4.135 12 C 0.512 3.488 13 O -0.545 6.545 14 N -0.722 5.722 15 C 0.157 3.843 16 C -0.156 4.156 17 C -0.126 4.126 18 C 0.173 3.827 19 N -0.601 5.601 20 C -0.346 4.346 21 H 0.059 0.941 22 C -0.025 4.025 23 N -0.918 5.918 24 Si 1.064 2.936 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.146 3.854 29 C -0.091 4.091 30 H 0.088 0.912 31 H 0.041 0.959 32 H 0.044 0.956 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.068 0.932 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.401 0.599 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.097 0.903 45 H 0.085 0.915 46 H 0.035 0.965 47 H 0.268 0.732 48 H 0.021 0.979 49 H 0.059 0.941 50 H 0.067 0.933 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 2.783 24.181 26.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.001 3.999 4 H 0.089 0.911 5 C -0.034 4.034 6 O -0.299 6.299 7 C -0.018 4.018 8 C -0.192 4.192 9 C -0.087 4.087 10 H 0.107 0.893 11 C -0.175 4.175 12 C 0.298 3.702 13 O -0.423 6.423 14 N -0.373 5.373 15 C 0.034 3.966 16 C -0.156 4.156 17 C -0.146 4.146 18 C 0.048 3.952 19 N -0.325 5.325 20 C -0.475 4.475 21 H 0.077 0.923 22 C -0.227 4.227 23 N -0.558 5.558 24 Si 0.893 3.107 25 H -0.211 1.211 26 H -0.221 1.221 27 H -0.220 1.220 28 C 0.019 3.981 29 C -0.130 4.130 30 H 0.106 0.894 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.115 0.885 36 H 0.073 0.927 37 H 0.120 0.880 38 H 0.086 0.914 39 H 0.109 0.891 40 H 0.119 0.881 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.115 0.885 45 H 0.103 0.897 46 H 0.053 0.947 47 H 0.079 0.921 48 H 0.039 0.961 49 H 0.078 0.922 50 H 0.085 0.915 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.951 3.455 23.329 24.888 hybrid contribution -1.342 -0.733 0.961 1.806 sum -9.293 2.722 24.290 26.149 Atomic orbital electron populations 1.22849 0.80838 1.03018 1.00140 1.87935 1.19805 1.26973 1.94979 1.22865 0.95341 0.85169 0.96533 0.91102 1.22993 0.98565 0.85887 0.96002 1.87940 1.32704 1.29887 1.79349 1.22669 0.84488 1.02429 0.92218 1.22416 1.03735 0.95333 0.97695 1.21017 0.94930 0.98641 0.94094 0.89267 1.21677 0.95619 1.04405 0.95801 1.20630 0.91450 0.76265 0.81824 1.90649 1.36587 1.50681 1.64398 1.46215 1.10021 1.70439 1.10623 1.20438 0.84481 1.01023 0.90659 1.20547 1.06079 0.96251 0.92748 1.23005 0.96222 0.97503 0.97890 1.19904 0.99603 0.86535 0.89172 1.44205 1.60424 1.00589 1.27268 1.19952 1.32539 1.01191 0.93780 0.92329 1.25832 1.03070 0.97382 0.96422 1.70813 1.11400 1.34300 1.39306 0.83544 0.75689 0.75515 0.75941 1.21073 1.22052 1.21966 1.21058 0.93375 0.95002 0.88644 1.20850 1.00993 0.92375 0.98827 0.89373 0.94009 0.93748 0.88918 0.92188 0.88509 0.92739 0.88020 0.91358 0.89096 0.88057 0.76458 0.91493 0.91609 0.88496 0.89710 0.94732 0.92129 0.96080 0.92215 0.91503 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.82 101.05 1.09 1.26 16 2 O -0.38 -3.25 9.74 -35.23 -0.34 -3.59 16 3 C 0.06 0.48 2.21 -26.60 -0.06 0.43 16 4 H 0.07 0.54 7.79 -51.93 -0.40 0.13 16 5 C 0.04 0.35 6.47 37.20 0.24 0.59 16 6 O -0.38 -3.68 10.77 -35.23 -0.38 -4.06 16 7 C 0.06 0.50 6.84 37.21 0.25 0.76 16 8 C -0.15 -1.43 5.13 -26.59 -0.14 -1.57 16 9 C -0.07 -0.64 1.64 -90.44 -0.15 -0.78 16 10 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 11 C -0.14 -1.22 5.12 -27.88 -0.14 -1.37 16 12 C 0.51 6.25 7.57 -10.98 -0.08 6.17 16 13 O -0.54 -8.35 14.00 5.56 0.08 -8.27 16 14 N -0.72 -8.71 5.55 -61.47 -0.34 -9.06 16 15 C 0.16 2.24 5.66 -5.20 -0.03 2.21 16 16 C -0.16 -2.56 5.22 -100.99 -0.53 -3.09 16 17 C -0.13 -2.28 9.47 -35.78 -0.34 -2.62 16 18 C 0.17 3.93 4.90 -5.10 -0.02 3.90 16 19 N -0.60 -14.73 2.88 -173.36 -0.50 -15.23 16 20 C -0.35 -9.52 9.58 -15.06 -0.14 -9.67 16 21 H 0.06 1.62 7.95 -52.49 -0.42 1.20 16 22 C -0.03 -0.71 4.73 -17.43 -0.08 -0.79 16 23 N -0.92 -26.98 12.54 55.49 0.70 -26.29 16 24 Si 1.06 25.00 29.99 -169.99 -5.10 19.90 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.15 2.95 6.61 -3.26 -0.02 2.92 16 29 C -0.09 -1.55 5.96 -27.91 -0.17 -1.72 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.20 7.96 -51.93 -0.41 -0.22 16 32 H 0.04 0.22 8.09 -51.93 -0.42 -0.20 16 33 H 0.09 0.62 7.96 -51.93 -0.41 0.21 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.10 1.13 6.07 -51.93 -0.32 0.81 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.10 0.86 7.65 -51.93 -0.40 0.46 16 41 H 0.40 4.21 8.46 -40.82 -0.35 3.86 16 42 H 0.07 1.00 8.11 -51.93 -0.42 0.57 16 43 H 0.07 0.98 7.78 -51.93 -0.40 0.57 16 44 H 0.10 1.57 7.73 -52.49 -0.41 1.17 16 45 H 0.08 2.16 6.77 -51.93 -0.35 1.81 16 46 H 0.04 0.81 7.40 -51.93 -0.38 0.43 16 47 H 0.27 7.86 6.39 -40.82 -0.26 7.60 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 1.21 7.96 -51.93 -0.41 0.79 16 50 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 51 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 400.02 15.07 6.03 6.03 Total: -1.00 -32.12 400.02 -8.95 -41.08 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -8.78 Total: 2.87 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.32 Total: -3.38 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.14 Total: -50.57 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.64 Total: -15.92 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.10 Total: 19.90 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.12 -8.95 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279574072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.250 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds