Wall clock time and date at job start Tue Mar 31 2020 21:51:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42905 * 114.00237 * 2 1 4 4 H 1.08999 * 109.51755 * 330.12971 * 3 2 1 5 5 C 1.53090 * 109.52056 * 90.31517 * 3 2 1 6 6 O 1.42904 * 109.41148 * 177.51641 * 5 3 2 7 7 C 1.42895 * 114.09849 * 298.84092 * 6 5 3 8 8 C 1.53093 * 109.41530 * 61.15971 * 7 6 5 9 9 C 1.53170 * 109.52209 * 210.00419 * 3 2 1 10 10 H 1.09000 * 109.54363 * 303.06931 * 9 3 2 11 11 C 1.52997 * 109.54647 * 63.24456 * 9 3 2 12 12 C 1.50703 * 109.47282 * 184.99736 * 11 9 3 13 13 O 1.21274 * 119.99817 * 0.02562 * 12 11 9 14 14 N 1.34774 * 120.00144 * 180.02562 * 12 11 9 15 15 C 1.46496 * 120.00301 * 180.02562 * 14 12 11 16 16 C 1.50699 * 109.47398 * 180.02562 * 15 14 12 17 17 C 1.29454 * 117.69611 * 94.99914 * 16 15 14 18 18 C 1.50324 * 123.65103 * 180.88103 * 17 16 15 19 19 N 1.47007 * 109.16348 * 349.02303 * 18 17 16 20 20 C 1.36935 * 121.37181 * 222.94494 * 19 18 17 21 21 H 1.08002 * 119.99769 * 155.52868 * 20 19 18 22 22 C 1.38810 * 120.00591 * 335.53118 * 20 19 18 23 23 N 1.31628 * 119.99513 * 334.39892 * 22 20 19 24 24 Si 1.86796 * 120.00592 * 154.12555 * 22 20 19 25 25 H 1.48496 * 109.47348 * 180.27792 * 24 22 20 26 26 H 1.48499 * 109.46882 * 300.27550 * 24 22 20 27 27 H 1.48499 * 109.47122 * 60.27270 * 24 22 20 28 28 C 1.47332 * 117.25316 * 43.22217 * 19 18 17 29 29 C 1.49968 * 117.69200 * 275.01996 * 16 15 14 30 30 H 1.08998 * 109.47570 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46962 * 300.00003 * 1 2 3 32 32 H 1.08999 * 109.47615 * 59.99479 * 1 2 3 33 33 H 1.08999 * 109.48389 * 297.49590 * 5 3 2 34 34 H 1.08995 * 109.48078 * 57.53651 * 5 3 2 35 35 H 1.09002 * 109.48217 * 181.14061 * 7 6 5 36 36 H 1.08997 * 109.48606 * 301.17936 * 7 6 5 37 37 H 1.09000 * 109.52539 * 182.48320 * 8 7 6 38 38 H 1.09005 * 109.52182 * 62.29910 * 8 7 6 39 39 H 1.09004 * 109.47359 * 65.00213 * 11 9 3 40 40 H 1.08993 * 109.47404 * 304.99934 * 11 9 3 41 41 H 0.97009 * 119.99662 * 359.97438 * 14 12 11 42 42 H 1.09002 * 109.47131 * 59.99634 * 15 14 12 43 43 H 1.09005 * 109.46956 * 299.99776 * 15 14 12 44 44 H 1.07994 * 118.17498 * 0.85909 * 17 16 15 45 45 H 1.08994 * 109.52014 * 229.11675 * 18 17 16 46 46 H 1.09005 * 109.57078 * 108.95751 * 18 17 16 47 47 H 0.97000 * 119.99522 * 353.87107 * 23 22 20 48 48 H 1.09000 * 109.78253 * 57.53606 * 28 19 18 49 49 H 1.09005 * 109.78114 * 178.34777 * 28 19 18 50 50 H 1.09000 * 109.31713 * 281.26677 * 29 16 15 51 51 H 1.09001 * 109.31524 * 40.69618 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3445 2.0005 -0.5117 5 6 2.2256 1.7696 1.4429 6 8 2.8597 3.0502 1.4403 7 6 4.1471 3.0625 0.8203 8 6 4.0090 2.6503 -0.6477 9 6 3.3605 1.2645 -0.7219 10 1 4.0085 0.5311 -0.2420 11 6 3.1464 0.8775 -2.1865 12 6 4.4828 0.7178 -2.8645 13 8 5.5057 0.8957 -2.2378 14 7 4.5412 0.3775 -4.1673 15 6 5.8403 0.2217 -4.8262 16 6 5.6293 -0.1582 -6.2692 17 6 5.6299 0.7924 -7.1480 18 6 5.4132 0.5677 -8.6184 19 7 5.4725 -0.8739 -8.9001 20 6 6.1433 -1.3603 -9.9903 21 1 6.5172 -2.3735 -9.9865 22 6 6.3430 -0.5511 -11.1003 23 7 5.5159 0.4426 -11.3477 24 14 7.7898 -0.8674 -12.2388 25 1 7.7834 0.1323 -13.3369 26 1 9.0567 -0.7531 -11.4727 27 1 7.6794 -2.2329 -12.8119 28 6 4.7750 -1.7734 -7.9646 29 6 5.4330 -1.6108 -6.5859 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 1.2630 1.8417 1.9491 34 1 2.8582 1.0518 1.9650 35 1 4.5688 4.0660 0.8779 36 1 4.8049 2.3616 1.3342 37 1 4.9951 2.6164 -1.1109 38 1 3.3841 3.3735 -1.1718 39 1 2.5752 1.6581 -2.6889 40 1 2.5986 -0.0634 -2.2374 41 1 3.7229 0.2349 -4.6684 42 1 6.4111 -0.5594 -4.3241 43 1 6.3887 1.1624 -4.7750 44 1 5.7950 1.8033 -6.8055 45 1 6.1905 1.0816 -9.1838 46 1 4.4362 0.9554 -8.9070 47 1 4.7183 0.5555 -10.8073 48 1 3.7211 -1.5010 -7.9075 49 1 4.8722 -2.8050 -8.3030 50 1 6.3999 -2.1142 -6.5839 51 1 4.7933 -2.0619 -5.8274 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279574072.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:24 Heat of formation + Delta-G solvation = -121.621843 kcal Electronic energy + Delta-G solvation = -29707.479342 eV Core-core repulsion = 25606.554643 eV Total energy + Delta-G solvation = -4100.924699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.39719 -40.36217 -39.47162 -38.27274 -36.67051 -35.20599 -34.67453 -32.67988 -31.53799 -31.39547 -30.16930 -28.25530 -27.48976 -25.99322 -24.57340 -24.32260 -24.10132 -22.85208 -21.60040 -21.12758 -19.85883 -18.64325 -18.01144 -17.67563 -17.36735 -17.24287 -16.79381 -16.54647 -16.41615 -16.13522 -15.96308 -15.61605 -15.51209 -15.42008 -15.05569 -14.88742 -14.54224 -14.22180 -14.09079 -13.86604 -13.80944 -13.57413 -13.42180 -13.22184 -13.00924 -12.64324 -12.53762 -12.53134 -12.27996 -12.17171 -12.02527 -11.89747 -11.75682 -11.73186 -11.44322 -11.31937 -11.07156 -10.91709 -10.52759 -10.22214 -10.07752 -9.79360 -9.00133 -8.27364 -5.38962 1.06440 1.57962 1.64258 1.65179 1.83998 2.38137 2.55537 2.64341 3.05642 3.19335 3.45462 3.56599 3.60621 3.75035 3.78251 3.86276 3.94880 4.07028 4.17436 4.29864 4.31636 4.38627 4.41222 4.45519 4.49280 4.54380 4.57772 4.64747 4.66248 4.70738 4.73353 4.75954 4.82166 4.85302 4.90906 4.91096 4.97121 5.00883 5.02685 5.14715 5.22232 5.25537 5.41804 5.62367 5.78034 5.99348 5.99509 6.30678 6.37792 6.55139 7.00676 7.23958 7.74325 8.20568 8.99577 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024672 B = 0.001943 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.606905 B =14406.137616 C =14915.528714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.396 6.396 3 C 0.066 3.934 4 H 0.082 0.918 5 C 0.040 3.960 6 O -0.391 6.391 7 C 0.058 3.942 8 C -0.149 4.149 9 C -0.068 4.068 10 H 0.067 0.933 11 C -0.126 4.126 12 C 0.511 3.489 13 O -0.578 6.578 14 N -0.716 5.716 15 C 0.168 3.832 16 C -0.130 4.130 17 C -0.143 4.143 18 C 0.183 3.817 19 N -0.622 5.622 20 C -0.353 4.353 21 H 0.053 0.947 22 C -0.077 4.077 23 N -0.944 5.944 24 Si 1.112 2.888 25 H -0.292 1.292 26 H -0.283 1.283 27 H -0.275 1.275 28 C 0.140 3.860 29 C -0.085 4.085 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.108 0.892 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.412 0.588 42 H 0.066 0.934 43 H 0.063 0.937 44 H 0.118 0.882 45 H 0.047 0.953 46 H 0.019 0.981 47 H 0.255 0.745 48 H 0.030 0.970 49 H 0.055 0.945 50 H 0.062 0.938 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.436 2.365 25.794 27.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.315 6.315 3 C 0.008 3.992 4 H 0.100 0.900 5 C -0.037 4.037 6 O -0.310 6.310 7 C -0.019 4.019 8 C -0.187 4.187 9 C -0.087 4.087 10 H 0.085 0.915 11 C -0.165 4.165 12 C 0.300 3.700 13 O -0.458 6.458 14 N -0.367 5.367 15 C 0.044 3.956 16 C -0.131 4.131 17 C -0.163 4.163 18 C 0.057 3.943 19 N -0.347 5.347 20 C -0.482 4.482 21 H 0.071 0.929 22 C -0.273 4.273 23 N -0.586 5.586 24 Si 0.937 3.063 25 H -0.218 1.218 26 H -0.209 1.209 27 H -0.201 1.201 28 C 0.015 3.985 29 C -0.123 4.123 30 H 0.114 0.886 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.126 0.874 36 H 0.069 0.931 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.248 0.752 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.066 0.934 46 H 0.037 0.963 47 H 0.065 0.935 48 H 0.048 0.952 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.860 3.010 24.973 26.668 hybrid contribution -1.131 -0.686 0.540 1.429 sum -9.991 2.324 25.514 27.498 Atomic orbital electron populations 1.23032 0.79392 1.03946 1.01105 1.87914 1.21432 1.27063 1.95074 1.22755 0.94715 0.85423 0.96296 0.90003 1.23096 0.99083 0.85256 0.96297 1.87924 1.32974 1.30691 1.79457 1.22709 0.84307 1.03068 0.91795 1.22326 1.02762 0.95612 0.97969 1.20981 0.95402 0.97968 0.94329 0.91457 1.21669 0.93841 1.05731 0.95286 1.21156 0.92204 0.75193 0.81468 1.90649 1.38048 1.52009 1.65067 1.46078 1.09541 1.70375 1.10733 1.20181 0.85621 1.00830 0.88944 1.20642 1.03148 0.95569 0.93697 1.22722 0.99080 0.99240 0.95252 1.19638 0.97602 0.85296 0.91734 1.44470 1.61049 1.01838 1.27319 1.20191 1.32257 1.01065 0.94688 0.92892 1.27124 1.04743 0.97242 0.98197 1.70916 1.11874 1.35770 1.40058 0.82885 0.73204 0.75976 0.74244 1.21766 1.20916 1.20065 1.21244 0.93826 0.93995 0.89450 1.20772 1.01095 0.92868 0.97584 0.88557 0.92982 0.92851 0.87354 0.92759 0.87352 0.93087 0.89976 0.90557 0.86877 0.86931 0.75206 0.91539 0.91906 0.86441 0.93440 0.96321 0.93474 0.95178 0.92619 0.92003 0.89158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.82 113.37 1.23 1.42 16 2 O -0.40 -5.93 9.74 -148.98 -1.45 -7.38 16 3 C 0.07 0.95 2.21 30.68 0.07 1.01 16 4 H 0.08 1.00 7.79 -2.39 -0.02 0.98 16 5 C 0.04 0.58 6.47 72.01 0.47 1.05 16 6 O -0.39 -7.01 10.77 -148.98 -1.60 -8.61 16 7 C 0.06 0.94 6.84 72.01 0.49 1.43 16 8 C -0.15 -2.59 5.13 30.69 0.16 -2.44 16 9 C -0.07 -1.17 1.64 -10.68 -0.02 -1.18 16 10 H 0.07 1.46 7.95 -2.39 -0.02 1.44 16 11 C -0.13 -1.96 5.12 29.85 0.15 -1.81 16 12 C 0.51 11.45 7.57 87.66 0.66 12.12 16 13 O -0.58 -17.08 14.00 -3.01 -0.04 -17.13 16 14 N -0.72 -15.37 5.55 -466.80 -2.59 -17.96 16 15 C 0.17 4.41 5.66 85.63 0.48 4.90 16 16 C -0.13 -4.02 5.22 -15.14 -0.08 -4.10 16 17 C -0.14 -5.08 9.47 27.11 0.26 -4.82 16 18 C 0.18 8.48 4.90 85.42 0.42 8.89 16 19 N -0.62 -30.81 2.88 -702.37 -2.02 -32.83 16 20 C -0.35 -19.67 9.58 84.03 0.81 -18.86 16 21 H 0.05 2.95 7.95 -2.91 -0.02 2.93 16 22 C -0.08 -4.36 4.73 84.86 0.40 -3.96 16 23 N -0.94 -57.08 12.54 21.65 0.27 -56.81 16 24 Si 1.11 50.91 29.99 68.60 2.06 52.97 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 C 0.14 5.53 6.61 86.43 0.57 6.10 16 29 C -0.08 -2.68 5.96 29.83 0.18 -2.50 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.36 7.96 -2.39 -0.02 0.34 16 32 H 0.05 0.38 8.09 -2.39 -0.02 0.36 16 33 H 0.11 1.22 7.96 -2.39 -0.02 1.20 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 1.79 6.07 -2.39 -0.01 1.77 16 38 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 40 H 0.11 1.56 7.65 -2.39 -0.02 1.54 16 41 H 0.41 7.29 8.46 -92.70 -0.78 6.51 16 42 H 0.07 1.81 8.11 -2.39 -0.02 1.79 16 43 H 0.06 1.74 7.78 -2.38 -0.02 1.72 16 44 H 0.12 3.68 7.73 -2.91 -0.02 3.66 16 45 H 0.05 2.52 6.77 -2.39 -0.02 2.51 16 46 H 0.02 0.92 7.40 -2.38 -0.02 0.91 16 47 H 0.26 15.59 6.39 -92.71 -0.59 15.00 16 48 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 49 H 0.06 2.21 7.96 -2.38 -0.02 2.19 16 50 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 51 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -70.61 400.02 1.17 -69.44 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.31 Total: 21.06 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 6.25 Total: -2.75 kcal Atomic # 7 Polarization: -103.25 SS G_CDS: -4.34 Total: -107.59 kcal Atomic # 8 Polarization: -30.02 SS G_CDS: -3.10 Total: -33.12 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.06 Total: 52.97 kcal Total: -70.61 1.17 -69.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279574072.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.186 kcal (2) G-P(sol) polarization free energy of solvation -70.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds