Wall clock time and date at job start Tue Mar 31 2020 21:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 114.00078 * 2 1 4 4 H 1.09010 * 109.56960 * 29.84795 * 3 2 1 5 5 C 1.53092 * 109.52613 * 269.69046 * 3 2 1 6 6 O 1.42902 * 109.41771 * 182.48426 * 5 3 2 7 7 C 1.42901 * 114.09837 * 61.15427 * 6 5 3 8 8 C 1.53093 * 109.41492 * 298.84329 * 7 6 5 9 9 C 1.53176 * 109.16196 * 57.61048 * 8 7 6 10 10 H 1.09003 * 109.54981 * 62.97271 * 9 8 7 11 11 C 1.53007 * 109.54394 * 183.15140 * 9 8 7 12 12 C 1.50700 * 109.47028 * 294.99687 * 11 9 8 13 13 O 1.21286 * 119.99870 * 0.02562 * 12 11 9 14 14 N 1.34775 * 120.00231 * 179.97438 * 12 11 9 15 15 C 1.46494 * 120.00077 * 180.02562 * 14 12 11 16 16 C 1.50703 * 109.47122 * 180.02562 * 15 14 12 17 17 C 1.29454 * 117.69023 * 94.99897 * 16 15 14 18 18 C 1.50327 * 123.64712 * 180.85669 * 17 16 15 19 19 N 1.47002 * 109.16778 * 349.02904 * 18 17 16 20 20 C 1.36938 * 121.37344 * 222.96827 * 19 18 17 21 21 H 1.07997 * 120.00136 * 155.95328 * 20 19 18 22 22 C 1.38809 * 119.99901 * 335.94710 * 20 19 18 23 23 N 1.31614 * 120.00451 * 344.54244 * 22 20 19 24 24 Si 1.86810 * 119.99961 * 164.53648 * 22 20 19 25 25 H 1.48502 * 109.46973 * 60.00187 * 24 22 20 26 26 H 1.48497 * 109.47019 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.46751 * 300.00268 * 24 22 20 28 28 C 1.47338 * 117.25350 * 42.94478 * 19 18 17 29 29 C 1.50092 * 117.67184 * 275.01017 * 16 15 14 30 30 H 1.08996 * 109.47149 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47167 * 299.99451 * 1 2 3 32 32 H 1.09002 * 109.47823 * 59.99548 * 1 2 3 33 33 H 1.09009 * 109.47871 * 62.50130 * 5 3 2 34 34 H 1.08997 * 109.48812 * 302.47592 * 5 3 2 35 35 H 1.08994 * 109.48349 * 178.86026 * 7 6 5 36 36 H 1.08997 * 109.48608 * 58.83220 * 7 6 5 37 37 H 1.08997 * 109.52469 * 297.70364 * 8 7 6 38 38 H 1.09003 * 109.57088 * 177.54262 * 8 7 6 39 39 H 1.08999 * 109.47121 * 174.99841 * 11 9 8 40 40 H 1.09003 * 109.46932 * 54.99494 * 11 9 8 41 41 H 0.96996 * 119.99722 * 0.02562 * 14 12 11 42 42 H 1.08999 * 109.47130 * 60.00429 * 15 14 12 43 43 H 1.09003 * 109.47175 * 299.99929 * 15 14 12 44 44 H 1.07999 * 118.17852 * 0.88166 * 17 16 15 45 45 H 1.09000 * 109.52474 * 229.11891 * 18 17 16 46 46 H 1.09001 * 109.52168 * 108.93214 * 18 17 16 47 47 H 0.96998 * 120.00776 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.77785 * 57.80770 * 28 19 18 49 49 H 1.08994 * 109.78020 * 178.56758 * 28 19 18 50 50 H 1.09001 * 109.38519 * 40.73863 * 29 16 15 51 51 H 1.08994 * 109.31829 * 281.26153 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 2.0014 0.5112 5 6 2.2255 1.7697 -1.4429 6 8 2.8596 3.0503 -1.4403 7 6 4.1470 3.0627 -0.8203 8 6 4.0089 2.6504 0.6476 9 6 3.3606 1.2646 0.7218 10 1 4.0098 0.5320 0.2422 11 6 3.1466 0.8774 2.1865 12 6 4.4828 0.7284 2.8671 13 8 5.5057 0.9140 2.2424 14 7 4.5413 0.3897 4.1703 15 6 5.8402 0.2454 4.8321 16 6 5.6295 -0.1361 6.2747 17 6 5.6685 -1.3945 6.5761 18 6 5.4577 -1.9248 7.9668 19 7 5.4729 -0.8043 8.9181 20 6 6.1378 -0.8917 10.1121 21 1 6.4725 0.0059 10.6107 22 6 6.3814 -2.1339 10.6815 23 7 5.7278 -3.1934 10.2542 24 14 7.6372 -2.3021 12.0543 25 1 7.2306 -1.4542 13.2036 26 1 7.7107 -3.7208 12.4868 27 1 8.9687 -1.8650 11.5633 28 6 4.7437 0.4170 8.5339 29 6 5.3889 0.9701 7.2602 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3635 0.5139 -0.8899 33 1 1.2627 1.8418 -1.9490 34 1 2.8579 1.0520 -1.9653 35 1 4.5687 4.0661 -0.8779 36 1 4.8049 2.3619 -1.3343 37 1 3.3840 3.3734 1.1718 38 1 4.9947 2.6167 1.1117 39 1 2.6056 -0.0675 2.2372 40 1 2.5685 1.6543 2.6869 41 1 3.7233 0.2416 4.6701 42 1 6.3810 1.1905 4.7811 43 1 6.4185 -0.5316 4.3320 44 1 5.8637 -2.1026 5.7844 45 1 6.2562 -2.6241 8.2149 46 1 4.4959 -2.4349 8.0202 47 1 5.8983 -4.0615 10.6518 48 1 3.6976 0.1773 8.3432 49 1 4.8132 1.1549 9.3329 50 1 4.7280 1.7138 6.8151 51 1 6.3389 1.4410 7.5127 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279574075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:34 Heat of formation + Delta-G solvation = -118.511780 kcal Electronic energy + Delta-G solvation = -29665.532878 eV Core-core repulsion = 25564.743042 eV Total energy + Delta-G solvation = -4100.789837 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.36364 -40.30572 -39.29501 -38.25554 -36.47127 -35.16734 -34.52447 -32.67363 -31.47952 -31.37938 -30.17726 -28.30877 -27.47556 -26.00506 -24.58109 -24.19862 -24.06925 -22.78311 -21.56300 -21.09799 -19.50413 -18.46536 -17.87976 -17.40014 -17.31614 -17.21462 -16.90074 -16.63764 -16.51457 -16.01159 -15.99296 -15.62023 -15.38254 -15.20384 -15.09249 -14.65496 -14.49980 -14.18382 -13.93529 -13.82747 -13.68228 -13.48331 -13.26507 -13.21474 -12.89196 -12.77092 -12.59127 -12.54730 -12.26734 -12.24876 -12.11236 -11.99738 -11.73870 -11.71262 -11.42197 -11.27143 -11.05122 -10.87499 -10.68167 -10.19387 -10.02596 -9.64155 -8.75671 -7.88952 -5.30262 1.18993 1.46647 1.49436 1.55646 1.67981 2.44073 2.50767 2.57741 3.07598 3.28122 3.59337 3.62370 3.63330 3.79967 3.86292 3.96701 3.98375 4.09745 4.20113 4.32519 4.40568 4.44991 4.47875 4.51133 4.53102 4.59307 4.66072 4.72363 4.74504 4.75492 4.83029 4.84325 4.87733 4.91737 4.93295 5.03172 5.10147 5.18262 5.21140 5.25136 5.37900 5.47503 5.47751 5.60796 5.76725 6.01211 6.16412 6.32690 6.33351 6.60208 7.12933 7.28278 7.83136 8.36668 9.19426 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025290 B = 0.001931 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.897604 B =14493.245396 C =15052.575561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.066 3.934 4 H 0.084 0.916 5 C 0.040 3.960 6 O -0.391 6.391 7 C 0.057 3.943 8 C -0.148 4.148 9 C -0.068 4.068 10 H 0.064 0.936 11 C -0.126 4.126 12 C 0.511 3.489 13 O -0.579 6.579 14 N -0.715 5.715 15 C 0.168 3.832 16 C -0.138 4.138 17 C -0.144 4.144 18 C 0.205 3.795 19 N -0.616 5.616 20 C -0.258 4.258 21 H 0.070 0.930 22 C -0.055 4.055 23 N -0.939 5.939 24 Si 0.968 3.032 25 H -0.274 1.274 26 H -0.295 1.295 27 H -0.281 1.281 28 C 0.138 3.862 29 C -0.083 4.083 30 H 0.095 0.905 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.109 0.891 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.412 0.588 42 H 0.068 0.932 43 H 0.057 0.943 44 H 0.110 0.890 45 H 0.056 0.944 46 H 0.014 0.986 47 H 0.250 0.750 48 H 0.028 0.972 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.965 11.420 -22.653 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.008 3.992 4 H 0.102 0.898 5 C -0.037 4.037 6 O -0.310 6.310 7 C -0.019 4.019 8 C -0.186 4.186 9 C -0.087 4.087 10 H 0.083 0.917 11 C -0.165 4.165 12 C 0.299 3.701 13 O -0.459 6.459 14 N -0.367 5.367 15 C 0.044 3.956 16 C -0.138 4.138 17 C -0.165 4.165 18 C 0.080 3.920 19 N -0.340 5.340 20 C -0.388 4.388 21 H 0.088 0.912 22 C -0.250 4.250 23 N -0.586 5.586 24 Si 0.796 3.204 25 H -0.200 1.200 26 H -0.221 1.221 27 H -0.207 1.207 28 C 0.013 3.987 29 C -0.122 4.122 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.071 0.929 35 H 0.127 0.873 36 H 0.068 0.932 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.248 0.752 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.128 0.872 45 H 0.074 0.926 46 H 0.032 0.968 47 H 0.059 0.941 48 H 0.047 0.953 49 H 0.078 0.922 50 H 0.108 0.892 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.196 11.403 -23.086 27.694 hybrid contribution 0.403 -0.919 1.325 1.662 sum -9.793 10.484 -21.761 26.065 Atomic orbital electron populations 1.23030 0.79394 1.03896 1.01148 1.87920 1.21449 1.27155 1.95075 1.22764 0.94737 0.85401 0.96289 0.89839 1.23093 0.99057 0.85260 0.96318 1.87922 1.32979 1.30623 1.79479 1.22714 0.84270 1.03067 0.91855 1.22326 1.02856 0.95509 0.97909 1.20987 0.95364 0.98039 0.94342 0.91704 1.21667 0.93879 1.05700 0.95274 1.21158 0.92178 0.75214 0.81533 1.90646 1.38071 1.51995 1.65201 1.46092 1.09656 1.70232 1.10673 1.20185 0.85483 1.01066 0.88824 1.20649 1.03981 0.94772 0.94443 1.22939 0.98385 0.96776 0.98375 1.19394 0.98266 0.89612 0.84718 1.44404 1.59466 1.13013 1.17090 1.19476 1.28464 0.92784 0.98037 0.91188 1.25745 1.01692 0.96409 1.01114 1.70152 1.42927 0.99408 1.46096 0.85331 0.79395 0.76299 0.79379 1.19991 1.22082 1.20705 1.21148 0.93657 0.88469 0.95418 1.20714 1.01080 0.95794 0.94602 0.88700 0.92760 0.92932 0.87352 0.92898 0.87255 0.93239 0.90368 0.89869 0.87255 0.86567 0.75203 0.91359 0.92469 0.87194 0.92619 0.96803 0.94114 0.95349 0.92247 0.89179 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.40 -6.23 9.75 -148.98 -1.45 -7.68 16 3 C 0.07 0.97 2.21 30.68 0.07 1.03 16 4 H 0.08 1.01 7.79 -2.38 -0.02 0.99 16 5 C 0.04 0.60 6.47 72.01 0.47 1.06 16 6 O -0.39 -6.99 10.77 -148.98 -1.60 -8.59 16 7 C 0.06 0.93 6.84 72.01 0.49 1.43 16 8 C -0.15 -2.56 5.12 30.68 0.16 -2.40 16 9 C -0.07 -1.20 1.64 -10.67 -0.02 -1.22 16 10 H 0.06 1.46 7.96 -2.39 -0.02 1.44 16 11 C -0.13 -2.01 5.12 29.85 0.15 -1.86 16 12 C 0.51 11.69 7.57 87.66 0.66 12.36 16 13 O -0.58 -17.39 13.98 -3.05 -0.04 -17.43 16 14 N -0.71 -15.79 5.55 -466.79 -2.59 -18.38 16 15 C 0.17 4.52 5.66 85.64 0.48 5.00 16 16 C -0.14 -4.34 5.23 -15.10 -0.08 -4.42 16 17 C -0.14 -5.32 9.47 27.11 0.26 -5.07 16 18 C 0.21 9.82 5.23 85.42 0.45 10.26 16 19 N -0.62 -30.46 3.01 -703.38 -2.12 -32.57 16 20 C -0.26 -14.06 9.71 84.03 0.82 -13.24 16 21 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 22 C -0.05 -3.05 5.01 84.86 0.43 -2.62 16 23 N -0.94 -55.15 11.08 21.65 0.24 -54.91 16 24 Si 0.97 44.83 29.58 68.60 2.03 46.86 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 27 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 28 C 0.14 5.38 6.58 86.26 0.57 5.94 16 29 C -0.08 -2.59 5.96 29.70 0.18 -2.41 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.05 0.41 8.09 -2.39 -0.02 0.39 16 32 H 0.05 0.38 7.96 -2.39 -0.02 0.36 16 33 H 0.11 1.25 7.96 -2.38 -0.02 1.23 16 34 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.80 6.03 -2.39 -0.01 1.78 16 39 H 0.11 1.64 7.66 -2.39 -0.02 1.62 16 40 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.41 7.56 8.46 -92.71 -0.78 6.77 16 42 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 43 H 0.06 1.66 7.78 -2.39 -0.02 1.65 16 44 H 0.11 3.67 7.73 -2.91 -0.02 3.65 16 45 H 0.06 3.04 6.41 -2.39 -0.02 3.03 16 46 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 48 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.06 2.25 7.96 -2.39 -0.02 2.23 16 50 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 51 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.53 401.17 0.89 -67.64 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.13 Total: 19.80 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 6.30 Total: 5.28 kcal Atomic # 7 Polarization: -101.40 SS G_CDS: -4.47 Total: -105.87 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -3.10 Total: -33.71 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -68.53 0.89 -67.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279574075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.872 kcal (2) G-P(sol) polarization free energy of solvation -68.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds