Wall clock time and date at job start Tue Mar 31 2020 21:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00295 * 2 1 4 4 C 1.53002 * 112.85104 * 295.35173 * 3 2 1 5 5 C 1.50702 * 109.46936 * 290.38249 * 4 3 2 6 6 O 1.21280 * 120.00237 * 5.46887 * 5 4 3 7 7 N 1.34777 * 119.99818 * 185.46900 * 5 4 3 8 8 C 1.47082 * 125.63064 * 0.02562 * 7 5 4 9 9 C 1.54461 * 107.30200 * 180.71626 * 8 7 5 10 10 C 1.54375 * 102.86069 * 21.50828 * 9 8 7 11 11 C 1.47569 * 125.62905 * 179.72026 * 7 5 4 12 12 C 1.52358 * 110.38341 * 207.58407 * 10 9 8 13 13 N 1.47331 * 108.40910 * 286.57141 * 12 10 9 14 14 C 1.36944 * 121.07138 * 130.80363 * 13 12 10 15 15 H 1.08001 * 120.00099 * 209.57453 * 14 13 12 16 16 C 1.38814 * 120.00047 * 29.57473 * 14 13 12 17 17 N 1.31617 * 119.99649 * 11.64136 * 16 14 13 18 18 Si 1.86793 * 120.00079 * 191.64034 * 16 14 13 19 19 H 1.48504 * 109.47134 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47095 * 119.99903 * 18 16 14 21 21 H 1.48495 * 109.47125 * 239.99938 * 18 16 14 22 22 C 1.47163 * 117.85915 * 310.82865 * 13 12 10 23 23 C 1.53285 * 108.55046 * 51.22453 * 22 13 12 24 24 O 1.41885 * 110.72127 * 83.68187 * 10 9 8 25 25 C 1.53777 * 113.68892 * 66.61920 * 3 2 1 26 26 C 1.53782 * 87.08127 * 89.12634 * 25 3 2 27 27 C 1.53776 * 113.61336 * 164.15475 * 3 2 1 28 28 H 1.08999 * 109.47319 * 185.52922 * 1 2 3 29 29 H 1.09005 * 109.46709 * 305.52668 * 1 2 3 30 30 H 1.08997 * 109.47098 * 65.52219 * 1 2 3 31 31 H 1.08994 * 109.47407 * 170.37927 * 4 3 2 32 32 H 1.09002 * 109.47009 * 50.37714 * 4 3 2 33 33 H 1.09000 * 109.88458 * 300.14850 * 8 7 5 34 34 H 1.09002 * 109.87540 * 61.14847 * 8 7 5 35 35 H 1.09000 * 110.73342 * 139.85127 * 9 8 7 36 36 H 1.08995 * 110.73872 * 262.98491 * 9 8 7 37 37 H 1.09002 * 110.37472 * 275.77884 * 11 7 5 38 38 H 1.09002 * 110.38043 * 38.12220 * 11 7 5 39 39 H 1.08995 * 109.67610 * 46.30408 * 12 10 9 40 40 H 1.08996 * 109.67570 * 166.84699 * 12 10 9 41 41 H 0.97001 * 119.99613 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.61995 * 291.51372 * 22 13 12 43 43 H 1.09000 * 109.78453 * 171.03648 * 22 13 12 44 44 H 1.09000 * 109.50636 * 187.07474 * 23 22 13 45 45 H 1.08997 * 109.50862 * 66.92758 * 23 22 13 46 46 H 1.09002 * 113.61439 * 203.67779 * 25 3 2 47 47 H 1.09000 * 113.61634 * 334.58044 * 25 3 2 48 48 H 1.08992 * 113.61478 * 270.87986 * 26 25 3 49 49 H 1.08998 * 113.68902 * 139.99027 * 26 25 3 50 50 H 1.08995 * 113.61969 * 25.34761 * 27 3 2 51 51 H 1.09004 * 113.61219 * 156.25230 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7005 2.0938 -1.2742 5 6 2.4377 1.4798 -2.4364 6 8 3.0614 0.4510 -2.2837 7 7 2.4038 2.0742 -3.6456 8 6 1.6900 3.3189 -3.9688 9 6 1.9193 3.6035 -5.4696 10 6 2.2949 2.2146 -6.0292 11 6 3.0818 1.5868 -4.8623 12 6 3.1846 2.3603 -7.2574 13 7 2.3532 2.8238 -8.3819 14 6 2.7392 3.8859 -9.1554 15 1 1.9941 4.5112 -9.6248 16 6 4.0882 4.1590 -9.3362 17 7 4.9933 3.2793 -8.9632 18 14 4.6187 5.7747 -10.1089 19 1 3.4178 6.5844 -10.4369 20 1 5.4739 6.5233 -9.1530 21 1 5.3862 5.5012 -11.3504 22 6 1.0944 2.1091 -8.6468 23 6 0.2990 2.0213 -7.3394 24 8 1.1299 1.4584 -6.3190 25 6 1.7511 2.0971 1.2926 26 6 3.0399 1.4654 1.8448 27 6 3.4991 1.3167 0.3847 28 1 -0.3634 -1.0229 0.0990 29 1 -0.3633 0.5972 0.8364 30 1 -0.3633 0.4258 -0.9353 31 1 2.0188 3.1285 -1.1477 32 1 0.6282 2.0646 -1.4678 33 1 0.6247 3.1969 -3.7732 34 1 2.0852 4.1390 -3.3693 35 1 1.0063 3.9735 -5.9360 36 1 2.7360 4.3120 -5.6077 37 1 4.1186 1.9228 -4.8794 38 1 3.0337 0.4990 -4.9138 39 1 3.9703 3.0887 -7.0571 40 1 3.6308 1.3968 -7.5037 41 1 5.9360 3.4699 -9.0899 42 1 1.3131 1.1051 -9.0104 43 1 0.5130 2.6503 -9.3933 44 1 -0.5756 1.3879 -7.4873 45 1 -0.0199 3.0195 -7.0396 46 1 1.8152 3.1775 1.1631 47 1 0.8507 1.7859 1.8221 48 1 2.8776 0.5136 2.3505 49 1 3.6512 2.1551 2.4267 50 1 4.0099 0.3756 0.1814 51 1 4.0411 2.1838 0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282772719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:34 Heat of formation + Delta-G solvation = -61.463656 kcal Electronic energy + Delta-G solvation = -31490.672287 eV Core-core repulsion = 27392.356242 eV Total energy + Delta-G solvation = -4098.316044 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.65157 -39.79622 -38.26572 -36.00113 -35.68246 -34.46363 -31.83127 -31.30279 -30.17172 -29.51670 -27.43503 -27.20657 -25.80420 -25.49262 -23.73199 -23.19045 -22.43902 -21.31265 -19.67513 -19.21472 -18.65901 -17.15626 -16.95484 -16.51527 -16.25372 -15.75858 -15.37174 -15.26365 -15.01536 -14.54940 -14.38705 -14.32819 -14.21975 -14.04682 -13.64765 -13.39000 -12.96911 -12.75610 -12.67566 -12.50795 -12.42454 -12.21330 -12.00228 -11.72726 -11.46605 -11.36216 -11.17308 -11.06342 -10.98664 -10.94898 -10.89325 -10.72389 -10.31804 -10.29204 -10.27328 -10.02676 -9.70622 -9.55885 -9.42764 -9.03144 -8.60119 -8.36761 -6.73745 -5.88489 -3.36213 2.86131 3.13013 3.29594 3.37669 3.39299 3.57424 4.16411 4.24850 4.38312 4.41004 4.55294 4.67103 4.79579 4.90101 5.05171 5.11494 5.11860 5.18511 5.24348 5.30176 5.34003 5.37583 5.42351 5.49872 5.51873 5.59113 5.59953 5.68976 5.71475 5.80226 5.85697 5.99301 6.02933 6.06916 6.08973 6.12110 6.15999 6.27469 6.31316 6.45966 6.50784 6.64394 6.77697 7.03740 7.16711 7.42609 7.67598 7.75936 7.92065 8.30451 8.41042 9.07175 9.68604 10.28135 11.19675 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.002821 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.201659 B = 9924.309322 C =10579.653969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.346 6.346 3 C 0.111 3.889 4 C -0.154 4.154 5 C 0.528 3.472 6 O -0.527 6.527 7 N -0.615 5.615 8 C 0.105 3.895 9 C -0.144 4.144 10 C 0.085 3.915 11 C 0.125 3.875 12 C 0.165 3.835 13 N -0.592 5.592 14 C -0.253 4.253 15 H 0.067 0.933 16 C 0.005 3.995 17 N -0.903 5.903 18 Si 0.905 3.095 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.289 1.289 22 C 0.109 3.891 23 C 0.046 3.954 24 O -0.374 6.374 25 C -0.165 4.165 26 C -0.137 4.137 27 C -0.114 4.114 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.030 0.970 41 H 0.255 0.745 42 H 0.026 0.974 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.046 0.954 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.068 0.932 50 H 0.084 0.916 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 0.472 18.194 20.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.264 6.264 3 C 0.070 3.930 4 C -0.194 4.194 5 C 0.316 3.684 6 O -0.403 6.403 7 N -0.350 5.350 8 C -0.018 4.018 9 C -0.182 4.182 10 C 0.043 3.957 11 C 0.002 3.998 12 C 0.039 3.961 13 N -0.316 5.316 14 C -0.383 4.383 15 H 0.085 0.915 16 C -0.194 4.194 17 N -0.547 5.547 18 Si 0.734 3.266 19 H -0.202 1.202 20 H -0.215 1.215 21 H -0.216 1.216 22 C -0.017 4.017 23 C -0.032 4.032 24 O -0.293 6.293 25 C -0.203 4.203 26 C -0.174 4.174 27 C -0.152 4.152 28 H 0.104 0.896 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.117 0.883 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.114 0.886 40 H 0.048 0.952 41 H 0.066 0.934 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.100 0.900 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.448 -0.438 18.413 20.263 hybrid contribution -0.029 1.398 -0.795 1.609 sum -8.477 0.960 17.618 19.575 Atomic orbital electron populations 1.22758 0.81857 1.02639 0.99853 1.88040 1.18870 1.25013 1.94469 1.22215 0.96035 0.83709 0.91043 1.22180 1.01991 1.01067 0.94171 1.19999 0.81578 0.84405 0.82376 1.90721 1.43152 1.23219 1.83182 1.48609 1.51266 1.25802 1.09330 1.22067 0.96273 0.85963 0.97545 1.23016 1.03813 0.98953 0.92383 1.22709 0.87637 0.89390 0.95955 1.22072 0.95596 1.00579 0.81504 1.21113 0.91876 0.99811 0.83326 1.44030 1.20653 1.34935 1.32025 1.19183 0.90696 1.02962 1.25435 0.91485 1.25156 0.96519 0.98205 0.99512 1.69979 1.00420 1.33422 1.50890 0.86192 0.78424 0.83190 0.78770 1.20236 1.21491 1.21572 1.21595 0.89359 0.96259 0.94521 1.23093 0.92879 0.97714 0.89493 1.87659 1.35172 1.49596 1.56851 1.23586 0.99180 1.00219 0.97268 1.22792 0.96738 1.01095 0.96806 1.22886 0.93928 1.03577 0.94781 0.89610 0.94008 0.94147 0.88264 0.88901 0.92052 0.91906 0.89661 0.89434 0.89840 0.89893 0.88616 0.95162 0.93444 0.95574 0.91941 0.90049 0.93561 0.89208 0.90947 0.89865 0.91329 0.89705 0.89323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.55 101.05 1.07 1.32 16 2 O -0.35 -4.64 10.12 -43.18 -0.44 -5.07 16 3 C 0.11 1.26 0.38 -89.81 -0.03 1.23 16 4 C -0.15 -1.75 4.35 -27.88 -0.12 -1.87 16 5 C 0.53 8.28 7.58 -10.98 -0.08 8.19 16 6 O -0.53 -10.12 15.13 -2.39 -0.04 -10.15 16 7 N -0.62 -9.67 3.33 -170.77 -0.57 -10.24 16 8 C 0.10 1.40 6.49 -2.96 -0.02 1.38 16 9 C -0.14 -2.32 5.87 -25.24 -0.15 -2.47 16 10 C 0.09 1.60 0.84 -89.65 -0.08 1.52 16 11 C 0.12 2.24 6.08 -2.88 -0.02 2.22 16 12 C 0.17 3.77 4.02 -3.92 -0.02 3.76 16 13 N -0.59 -14.17 2.97 -172.25 -0.51 -14.68 16 14 C -0.25 -6.58 9.65 -15.06 -0.15 -6.72 16 15 H 0.07 1.71 7.86 -52.49 -0.41 1.30 16 16 C 0.01 0.14 5.05 -17.43 -0.09 0.05 16 17 N -0.90 -25.16 11.10 55.49 0.62 -24.55 16 18 Si 0.90 20.78 29.57 -169.99 -5.03 15.75 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.11 2.22 6.71 -3.53 -0.02 2.19 16 23 C 0.05 0.80 6.78 37.31 0.25 1.05 16 24 O -0.37 -7.19 10.28 -35.22 -0.36 -7.55 16 25 C -0.16 -1.39 7.18 -25.92 -0.19 -1.58 16 26 C -0.14 -1.23 8.02 -25.92 -0.21 -1.44 16 27 C -0.11 -1.31 6.24 -25.92 -0.16 -1.47 16 28 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.04 0.33 6.62 -51.93 -0.34 -0.02 16 30 H 0.04 0.40 6.88 -51.93 -0.36 0.04 16 31 H 0.10 0.90 7.97 -51.93 -0.41 0.49 16 32 H 0.09 0.95 6.70 -51.93 -0.35 0.60 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.37 6.08 -51.93 -0.32 1.06 16 36 H 0.09 1.48 7.83 -51.93 -0.41 1.08 16 37 H 0.08 1.48 7.99 -51.93 -0.42 1.06 16 38 H 0.08 1.61 8.06 -51.93 -0.42 1.19 16 39 H 0.10 2.38 6.08 -51.93 -0.32 2.07 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 1.20 7.97 -51.93 -0.41 0.78 16 44 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 45 H 0.05 0.77 6.23 -51.93 -0.32 0.44 16 46 H 0.09 0.62 7.99 -51.93 -0.41 0.21 16 47 H 0.07 0.56 6.76 -51.93 -0.35 0.21 16 48 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 51 H 0.09 0.94 8.10 -51.93 -0.42 0.52 16 LS Contribution 390.22 15.07 5.88 5.88 Total: -1.00 -31.64 390.22 -9.06 -40.70 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -8.61 Total: 2.55 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.01 Total: 7.36 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: -0.46 Total: -49.46 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.84 Total: -22.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.03 Total: 15.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.64 -9.06 -40.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282772719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.767 kcal (2) G-P(sol) polarization free energy of solvation -31.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds