Wall clock time and date at job start Tue Mar 31 2020 21:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00295 * 2 1 4 4 C 1.53002 * 112.85104 * 295.35173 * 3 2 1 5 5 C 1.50702 * 109.46936 * 290.38249 * 4 3 2 6 6 O 1.21280 * 120.00237 * 5.46887 * 5 4 3 7 7 N 1.34777 * 119.99818 * 185.46900 * 5 4 3 8 8 C 1.47082 * 125.63064 * 0.02562 * 7 5 4 9 9 C 1.54461 * 107.30200 * 180.71626 * 8 7 5 10 10 C 1.54375 * 102.86069 * 21.50828 * 9 8 7 11 11 C 1.47569 * 125.62905 * 179.72026 * 7 5 4 12 12 C 1.52358 * 110.38341 * 207.58407 * 10 9 8 13 13 N 1.47331 * 108.40910 * 286.57141 * 12 10 9 14 14 C 1.36944 * 121.07138 * 130.80363 * 13 12 10 15 15 H 1.08001 * 120.00099 * 209.57453 * 14 13 12 16 16 C 1.38814 * 120.00047 * 29.57473 * 14 13 12 17 17 N 1.31617 * 119.99649 * 11.64136 * 16 14 13 18 18 Si 1.86793 * 120.00079 * 191.64034 * 16 14 13 19 19 H 1.48504 * 109.47134 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.47095 * 119.99903 * 18 16 14 21 21 H 1.48495 * 109.47125 * 239.99938 * 18 16 14 22 22 C 1.47163 * 117.85915 * 310.82865 * 13 12 10 23 23 C 1.53285 * 108.55046 * 51.22453 * 22 13 12 24 24 O 1.41885 * 110.72127 * 83.68187 * 10 9 8 25 25 C 1.53777 * 113.68892 * 66.61920 * 3 2 1 26 26 C 1.53782 * 87.08127 * 89.12634 * 25 3 2 27 27 C 1.53776 * 113.61336 * 164.15475 * 3 2 1 28 28 H 1.08999 * 109.47319 * 185.52922 * 1 2 3 29 29 H 1.09005 * 109.46709 * 305.52668 * 1 2 3 30 30 H 1.08997 * 109.47098 * 65.52219 * 1 2 3 31 31 H 1.08994 * 109.47407 * 170.37927 * 4 3 2 32 32 H 1.09002 * 109.47009 * 50.37714 * 4 3 2 33 33 H 1.09000 * 109.88458 * 300.14850 * 8 7 5 34 34 H 1.09002 * 109.87540 * 61.14847 * 8 7 5 35 35 H 1.09000 * 110.73342 * 139.85127 * 9 8 7 36 36 H 1.08995 * 110.73872 * 262.98491 * 9 8 7 37 37 H 1.09002 * 110.37472 * 275.77884 * 11 7 5 38 38 H 1.09002 * 110.38043 * 38.12220 * 11 7 5 39 39 H 1.08995 * 109.67610 * 46.30408 * 12 10 9 40 40 H 1.08996 * 109.67570 * 166.84699 * 12 10 9 41 41 H 0.97001 * 119.99613 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.61995 * 291.51372 * 22 13 12 43 43 H 1.09000 * 109.78453 * 171.03648 * 22 13 12 44 44 H 1.09000 * 109.50636 * 187.07474 * 23 22 13 45 45 H 1.08997 * 109.50862 * 66.92758 * 23 22 13 46 46 H 1.09002 * 113.61439 * 203.67779 * 25 3 2 47 47 H 1.09000 * 113.61634 * 334.58044 * 25 3 2 48 48 H 1.08992 * 113.61478 * 270.87986 * 26 25 3 49 49 H 1.08998 * 113.68902 * 139.99027 * 26 25 3 50 50 H 1.08995 * 113.61969 * 25.34761 * 27 3 2 51 51 H 1.09004 * 113.61219 * 156.25230 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7005 2.0938 -1.2742 5 6 2.4377 1.4798 -2.4364 6 8 3.0614 0.4510 -2.2837 7 7 2.4038 2.0742 -3.6456 8 6 1.6900 3.3189 -3.9688 9 6 1.9193 3.6035 -5.4696 10 6 2.2949 2.2146 -6.0292 11 6 3.0818 1.5868 -4.8623 12 6 3.1846 2.3603 -7.2574 13 7 2.3532 2.8238 -8.3819 14 6 2.7392 3.8859 -9.1554 15 1 1.9941 4.5112 -9.6248 16 6 4.0882 4.1590 -9.3362 17 7 4.9933 3.2793 -8.9632 18 14 4.6187 5.7747 -10.1089 19 1 3.4178 6.5844 -10.4369 20 1 5.4739 6.5233 -9.1530 21 1 5.3862 5.5012 -11.3504 22 6 1.0944 2.1091 -8.6468 23 6 0.2990 2.0213 -7.3394 24 8 1.1299 1.4584 -6.3190 25 6 1.7511 2.0971 1.2926 26 6 3.0399 1.4654 1.8448 27 6 3.4991 1.3167 0.3847 28 1 -0.3634 -1.0229 0.0990 29 1 -0.3633 0.5972 0.8364 30 1 -0.3633 0.4258 -0.9353 31 1 2.0188 3.1285 -1.1477 32 1 0.6282 2.0646 -1.4678 33 1 0.6247 3.1969 -3.7732 34 1 2.0852 4.1390 -3.3693 35 1 1.0063 3.9735 -5.9360 36 1 2.7360 4.3120 -5.6077 37 1 4.1186 1.9228 -4.8794 38 1 3.0337 0.4990 -4.9138 39 1 3.9703 3.0887 -7.0571 40 1 3.6308 1.3968 -7.5037 41 1 5.9360 3.4699 -9.0899 42 1 1.3131 1.1051 -9.0104 43 1 0.5130 2.6503 -9.3933 44 1 -0.5756 1.3879 -7.4873 45 1 -0.0199 3.0195 -7.0396 46 1 1.8152 3.1775 1.1631 47 1 0.8507 1.7859 1.8221 48 1 2.8776 0.5136 2.3505 49 1 3.6512 2.1551 2.4267 50 1 4.0099 0.3756 0.1814 51 1 4.0411 2.1838 0.0070 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282772719.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:33 Heat of formation + Delta-G solvation = -81.900013 kcal Electronic energy + Delta-G solvation = -31491.558473 eV Core-core repulsion = 27392.356242 eV Total energy + Delta-G solvation = -4099.202231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.75981 -40.99851 -39.54238 -37.41332 -36.49500 -36.24786 -33.29300 -33.11830 -31.22923 -30.86046 -29.05217 -27.98579 -27.32886 -26.35829 -25.27978 -24.42941 -23.57542 -22.90469 -20.67674 -20.41333 -19.99217 -18.90532 -18.24677 -17.64389 -17.40272 -16.99407 -16.57353 -16.46368 -16.14531 -16.10899 -15.76168 -15.63957 -15.26736 -15.11665 -15.02374 -14.88041 -14.54067 -14.26629 -13.87898 -13.69995 -13.60446 -13.25081 -13.07048 -13.03113 -12.82583 -12.68318 -12.55719 -12.48150 -12.25805 -12.19984 -12.09654 -11.93341 -11.88291 -11.85092 -11.67750 -11.15875 -11.12074 -10.84487 -10.72501 -10.50139 -10.29624 -9.63676 -8.68566 -7.89037 -5.40660 1.46759 1.49055 1.59049 1.68430 1.94077 2.47888 2.73131 2.80441 3.25566 3.33037 3.46514 3.61106 3.67194 3.70573 3.82691 3.94161 4.01396 4.10248 4.22499 4.30126 4.35329 4.37984 4.41896 4.46434 4.50852 4.54252 4.59412 4.61280 4.67214 4.71612 4.77663 4.79320 4.85890 4.90415 4.92442 5.04679 5.06076 5.07319 5.13050 5.18429 5.23985 5.26585 5.29056 5.41959 5.51598 5.62214 6.31644 6.40229 6.41344 6.57209 7.07408 7.21082 7.74405 8.31391 9.17183 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.019921 B = 0.002821 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.201659 B = 9924.309322 C =10579.653969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.382 6.382 3 C 0.097 3.903 4 C -0.145 4.145 5 C 0.522 3.478 6 O -0.573 6.573 7 N -0.616 5.616 8 C 0.110 3.890 9 C -0.137 4.137 10 C 0.093 3.907 11 C 0.129 3.871 12 C 0.178 3.822 13 N -0.608 5.608 14 C -0.257 4.257 15 H 0.075 0.925 16 C -0.048 4.048 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.262 1.262 20 H -0.289 1.289 21 H -0.297 1.297 22 C 0.103 3.897 23 C 0.053 3.947 24 O -0.384 6.384 25 C -0.146 4.146 26 C -0.131 4.131 27 C -0.127 4.127 28 H 0.088 0.912 29 H 0.066 0.934 30 H 0.039 0.961 31 H 0.132 0.868 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.058 0.942 39 H 0.070 0.930 40 H -0.013 1.013 41 H 0.250 0.750 42 H 0.009 0.991 43 H 0.076 0.924 44 H 0.115 0.885 45 H 0.063 0.937 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.876 3.195 20.089 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.301 6.301 3 C 0.057 3.943 4 C -0.184 4.184 5 C 0.312 3.688 6 O -0.452 6.452 7 N -0.350 5.350 8 C -0.012 4.012 9 C -0.175 4.175 10 C 0.051 3.949 11 C 0.005 3.995 12 C 0.051 3.949 13 N -0.333 5.333 14 C -0.387 4.387 15 H 0.092 0.908 16 C -0.244 4.244 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.186 1.186 20 H -0.215 1.215 21 H -0.224 1.224 22 C -0.023 4.023 23 C -0.024 4.024 24 O -0.304 6.304 25 C -0.183 4.183 26 C -0.168 4.168 27 C -0.165 4.165 28 H 0.107 0.893 29 H 0.084 0.916 30 H 0.057 0.943 31 H 0.150 0.850 32 H 0.130 0.870 33 H 0.105 0.895 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.006 0.994 41 H 0.059 0.941 42 H 0.027 0.973 43 H 0.094 0.906 44 H 0.133 0.867 45 H 0.082 0.918 46 H 0.133 0.867 47 H 0.102 0.898 48 H 0.093 0.907 49 H 0.105 0.895 50 H 0.066 0.934 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.347 2.305 20.315 23.383 hybrid contribution 0.861 0.437 -1.482 1.769 sum -10.486 2.742 18.833 21.729 Atomic orbital electron populations 1.22910 0.80340 1.03498 1.00770 1.87999 1.20746 1.26632 1.94738 1.22434 0.95672 0.83646 0.92524 1.22264 1.02292 1.02184 0.91700 1.20918 0.81029 0.83833 0.83013 1.90709 1.45173 1.25427 1.83855 1.48703 1.51175 1.26595 1.08568 1.22207 0.97675 0.85680 0.95602 1.22913 1.03571 0.96435 0.94541 1.22385 0.86982 0.91521 0.94026 1.21802 0.95591 0.99091 0.83049 1.20813 0.92209 0.96630 0.85251 1.44288 1.21671 1.35011 1.32302 1.19531 0.90928 1.03372 1.24871 0.90767 1.25919 0.96685 1.01224 1.00564 1.70161 1.00321 1.35326 1.52628 0.85170 0.78150 0.79626 0.77275 1.18595 1.21548 1.22435 1.21793 0.88445 0.95078 0.96970 1.23169 0.92731 0.99509 0.86994 1.87658 1.35059 1.50373 1.57270 1.23535 0.98987 1.01085 0.94684 1.22755 0.97476 1.01332 0.95262 1.22963 0.94353 1.01960 0.97185 0.89309 0.91567 0.94258 0.85021 0.87002 0.89532 0.88480 0.88924 0.90581 0.90716 0.92341 0.91160 0.99446 0.94066 0.97260 0.90600 0.86703 0.91849 0.86702 0.89815 0.90733 0.89495 0.93411 0.88715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.55 113.37 1.20 1.56 16 2 O -0.38 -9.94 10.12 -141.38 -1.43 -11.37 16 3 C 0.10 2.03 0.38 -10.27 0.00 2.02 16 4 C -0.14 -2.82 4.35 29.85 0.13 -2.69 16 5 C 0.52 15.82 7.58 87.66 0.66 16.49 16 6 O -0.57 -22.68 15.13 4.57 0.07 -22.61 16 7 N -0.62 -18.60 3.33 -812.57 -2.71 -21.31 16 8 C 0.11 2.55 6.49 86.76 0.56 3.12 16 9 C -0.14 -4.16 5.87 31.56 0.19 -3.98 16 10 C 0.09 3.51 0.84 -10.16 -0.01 3.50 16 11 C 0.13 4.77 6.08 86.55 0.53 5.30 16 12 C 0.18 8.50 4.02 86.01 0.35 8.85 16 13 N -0.61 -29.52 2.97 -698.86 -2.07 -31.60 16 14 C -0.26 -13.39 9.65 84.03 0.81 -12.58 16 15 H 0.07 3.70 7.86 -2.91 -0.02 3.68 16 16 C -0.05 -2.60 5.05 84.86 0.43 -2.18 16 17 N -0.94 -54.39 11.10 21.65 0.24 -54.15 16 18 Si 0.97 43.03 29.57 68.60 2.03 45.06 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 21 H -0.30 -13.49 7.11 99.48 0.71 -12.78 16 22 C 0.10 4.12 6.71 86.35 0.58 4.70 16 23 C 0.05 1.72 6.78 72.08 0.49 2.21 16 24 O -0.38 -14.45 10.28 -148.95 -1.53 -15.98 16 25 C -0.15 -1.90 7.18 31.12 0.22 -1.68 16 26 C -0.13 -2.09 8.02 31.12 0.25 -1.84 16 27 C -0.13 -2.85 6.24 31.12 0.19 -2.65 16 28 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 0.82 6.62 -2.38 -0.02 0.80 16 30 H 0.04 0.69 6.88 -2.39 -0.02 0.67 16 31 H 0.13 1.71 7.97 -2.39 -0.02 1.69 16 32 H 0.11 1.80 6.70 -2.39 -0.02 1.78 16 33 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 2.69 6.08 -2.39 -0.01 2.68 16 36 H 0.08 2.50 7.83 -2.39 -0.02 2.48 16 37 H 0.07 2.84 7.99 -2.39 -0.02 2.82 16 38 H 0.06 2.42 8.06 -2.39 -0.02 2.40 16 39 H 0.07 3.70 6.08 -2.39 -0.01 3.69 16 40 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 41 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.08 2.80 7.97 -2.39 -0.02 2.78 16 44 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 45 H 0.06 1.87 6.23 -2.39 -0.01 1.86 16 46 H 0.11 0.96 7.99 -2.39 -0.02 0.94 16 47 H 0.08 0.94 6.76 -2.39 -0.02 0.93 16 48 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 50 H 0.05 1.39 8.07 -2.39 -0.02 1.37 16 51 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 Total: -1.00 -73.33 390.22 2.08 -71.25 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.91 Total: 20.55 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 6.57 Total: 20.15 kcal Atomic # 7 Polarization: -102.51 SS G_CDS: -4.54 Total: -107.06 kcal Atomic # 8 Polarization: -47.07 SS G_CDS: -2.89 Total: -49.96 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.33 2.08 -71.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282772719.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.646 kcal (2) G-P(sol) polarization free energy of solvation -73.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds