Wall clock time and date at job start Tue Mar 31 2020 22:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86793 * 120.00012 * 2 1 4 4 H 1.48504 * 109.47182 * 269.99672 * 3 2 1 5 5 H 1.48498 * 109.47505 * 29.99682 * 3 2 1 6 6 H 1.48504 * 109.47090 * 150.00028 * 3 2 1 7 7 C 1.38947 * 119.99542 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00385 * 0.02562 * 7 2 1 9 9 N 1.37099 * 119.99967 * 180.02562 * 7 2 1 10 10 C 1.34779 * 120.00467 * 180.02562 * 9 7 2 11 11 O 1.21287 * 119.99403 * 359.97438 * 10 9 7 12 12 C 1.50696 * 119.99922 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.46702 * 179.97438 * 12 10 9 14 14 C 1.46960 * 110.99827 * 169.99995 * 13 12 10 15 15 C 1.53049 * 109.36377 * 183.18528 * 14 13 12 16 16 N 1.46949 * 109.36850 * 301.60323 * 15 14 13 17 17 C 1.46896 * 111.00327 * 183.18627 * 16 15 14 18 18 C 1.53006 * 109.47501 * 169.99689 * 17 16 15 19 19 C 1.52999 * 109.46997 * 180.02562 * 18 17 16 20 20 N 1.46506 * 109.46684 * 180.02562 * 19 18 17 21 21 C 1.34777 * 119.99873 * 180.02562 * 20 19 18 22 22 O 1.21284 * 119.99754 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00137 * 179.97438 * 21 20 19 24 24 C 1.53001 * 117.49887 * 248.61985 * 23 21 20 25 25 C 1.52994 * 59.99933 * 252.50574 * 24 23 21 26 26 C 1.46960 * 110.88232 * 59.31761 * 16 15 14 27 27 C 1.46957 * 111.00220 * 293.79732 * 13 12 10 28 28 H 0.97001 * 120.00218 * 0.02562 * 1 2 3 29 29 H 0.97007 * 119.99657 * 0.02562 * 9 7 2 30 30 H 1.09003 * 109.47391 * 60.00482 * 12 10 9 31 31 H 1.08993 * 109.47302 * 299.99372 * 12 10 9 32 32 H 1.09001 * 109.48625 * 63.22140 * 14 13 12 33 33 H 1.08999 * 109.48629 * 303.15851 * 14 13 12 34 34 H 1.08996 * 109.48813 * 181.62886 * 15 14 13 35 35 H 1.09003 * 109.48638 * 61.56798 * 15 14 13 36 36 H 1.09000 * 109.47017 * 49.99835 * 17 16 15 37 37 H 1.08996 * 109.47227 * 290.00155 * 17 16 15 38 38 H 1.09000 * 109.46866 * 60.00053 * 18 17 16 39 39 H 1.09001 * 109.46611 * 300.00170 * 18 17 16 40 40 H 1.09000 * 109.47486 * 60.00167 * 19 18 17 41 41 H 1.09001 * 109.47362 * 299.99445 * 19 18 17 42 42 H 0.96995 * 120.00050 * 359.72237 * 20 19 18 43 43 H 1.09004 * 115.54642 * 34.32831 * 23 21 20 44 44 H 1.09001 * 117.49733 * 0.02562 * 24 23 21 45 45 H 1.08997 * 117.49999 * 145.01700 * 24 23 21 46 46 H 1.09004 * 117.50553 * 252.50777 * 25 24 23 47 47 H 1.09012 * 117.51513 * 107.47863 * 25 24 23 48 48 H 1.09001 * 109.48625 * 60.64907 * 26 16 15 49 49 H 1.08999 * 109.48888 * 180.71681 * 26 16 15 50 50 H 1.08996 * 109.49239 * 296.78423 * 27 13 12 51 51 H 1.09007 * 109.48253 * 56.84361 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6527 0.6999 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3797 -1.2035 0.0011 10 6 4.0536 -2.3707 0.0011 11 8 3.4471 -3.4210 0.0011 12 6 5.5606 -2.3707 0.0011 13 7 6.0502 -3.7557 0.0017 14 6 7.4996 -3.8020 -0.2365 15 6 7.9559 -5.2612 -0.3075 16 7 7.6094 -5.9417 0.9480 17 6 8.0990 -7.3267 0.9487 18 6 7.9446 -7.9217 2.3499 19 6 8.4551 -9.3639 2.3506 20 7 8.3067 -9.9338 3.6921 21 6 8.6938 -11.2023 3.9320 22 8 9.1646 -11.8721 3.0372 23 6 8.5417 -11.7882 5.3120 24 6 9.8200 -12.0795 6.1007 25 6 8.9995 -13.2331 5.5205 26 6 6.1600 -5.8954 1.1863 27 6 5.7038 -4.4362 1.2573 28 1 -0.4850 0.8400 -0.0004 29 1 3.8648 -0.3634 0.0014 30 1 5.9240 -1.8569 0.8911 31 1 5.9239 -1.8570 -0.8889 32 1 8.0184 -3.2980 0.5789 33 1 7.7295 -3.3028 -1.1778 34 1 9.0352 -5.2979 -0.4552 35 1 7.4574 -5.7580 -1.1399 36 1 9.1505 -7.3405 0.6620 37 1 7.5208 -7.9168 0.2376 38 1 6.8931 -7.9079 2.6365 39 1 8.5228 -7.3315 3.0608 40 1 9.5067 -9.3773 2.0640 41 1 7.8772 -9.9543 1.6395 42 1 7.9339 -9.3967 4.4086 43 1 7.6699 -11.4507 5.8726 44 1 10.7710 -11.8469 5.6215 45 1 9.7895 -11.9335 7.1804 46 1 8.4292 -13.8462 6.2184 47 1 9.4104 -13.7601 4.6592 48 1 5.6412 -6.3994 0.3708 49 1 5.9301 -6.3945 2.1276 50 1 6.2022 -3.9395 2.0897 51 1 4.6244 -4.3994 1.4050 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316951140.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:05:54 Heat of formation + Delta-G solvation = -57.918342 kcal Electronic energy + Delta-G solvation = -28533.243603 eV Core-core repulsion = 24467.374046 eV Total energy + Delta-G solvation = -4065.869557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.01824 -40.80090 -39.67950 -37.59289 -36.89515 -36.06769 -35.64945 -33.75025 -32.73400 -31.82517 -29.94446 -27.64625 -26.29731 -24.99173 -24.61806 -23.69801 -23.30179 -22.28760 -21.27648 -20.94464 -20.74289 -20.19279 -18.43179 -17.79620 -17.48082 -16.94295 -16.87730 -16.66269 -16.39996 -16.10657 -15.74200 -15.69630 -15.50247 -15.40074 -15.13271 -15.03910 -14.74689 -14.61111 -14.28700 -13.86984 -13.55252 -13.43126 -13.24919 -13.04653 -12.81945 -12.60760 -12.56478 -12.44627 -12.40304 -12.19735 -12.02952 -11.96207 -11.78151 -11.56097 -11.52169 -11.44735 -11.43557 -10.95374 -10.34507 -10.22217 -10.15282 -9.40140 -9.16558 -8.40364 -6.00985 1.30804 1.36329 1.44176 1.45052 1.97095 2.09460 2.23799 2.63146 2.89331 2.92242 3.15276 3.24053 3.70689 3.85714 3.86556 3.91344 3.97686 4.03429 4.09677 4.13975 4.23245 4.25022 4.31554 4.37139 4.42117 4.49677 4.55467 4.58553 4.61328 4.69942 4.73592 4.75156 4.87604 4.91585 4.96346 5.02427 5.04134 5.10393 5.16250 5.20449 5.21957 5.41344 5.53980 5.87172 5.96489 5.98951 6.16022 6.24908 6.50690 6.61268 6.89805 7.19760 7.41325 7.98864 8.77321 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022004 B = 0.001597 C = 0.001531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.183494 B =17530.601308 C =18286.380788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.257 1.257 5 H -0.276 1.276 6 H -0.231 1.231 7 C -0.327 4.327 8 H 0.055 0.945 9 N -0.592 5.592 10 C 0.451 3.549 11 O -0.606 6.606 12 C 0.056 3.944 13 N -0.542 5.542 14 C 0.058 3.942 15 C 0.059 3.941 16 N -0.538 5.538 17 C 0.059 3.941 18 C -0.114 4.114 19 C 0.125 3.875 20 N -0.714 5.714 21 C 0.534 3.466 22 O -0.591 6.591 23 C -0.202 4.202 24 C -0.140 4.140 25 C -0.157 4.157 26 C 0.067 3.933 27 C 0.058 3.942 28 H 0.279 0.721 29 H 0.389 0.611 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.029 0.971 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.053 0.947 42 H 0.417 0.583 43 H 0.151 0.849 44 H 0.088 0.912 45 H 0.131 0.869 46 H 0.125 0.875 47 H 0.084 0.916 48 H 0.020 0.980 49 H 0.091 0.909 50 H 0.041 0.959 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.426 -14.129 11.023 31.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.213 4.213 3 Si 0.785 3.215 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.155 1.155 7 C -0.456 4.456 8 H 0.073 0.927 9 N -0.234 5.234 10 C 0.239 3.761 11 O -0.490 6.490 12 C -0.075 4.075 13 N -0.268 5.268 14 C -0.069 4.069 15 C -0.069 4.069 16 N -0.262 5.262 17 C -0.069 4.069 18 C -0.152 4.152 19 C 0.000 4.000 20 N -0.366 5.366 21 C 0.322 3.678 22 O -0.473 6.473 23 C -0.222 4.222 24 C -0.177 4.177 25 C -0.194 4.194 26 C -0.061 4.061 27 C -0.070 4.070 28 H 0.088 0.912 29 H 0.225 0.775 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.069 0.931 33 H 0.114 0.886 34 H 0.124 0.876 35 H 0.047 0.953 36 H 0.110 0.890 37 H 0.047 0.953 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.254 0.746 43 H 0.169 0.831 44 H 0.106 0.894 45 H 0.150 0.850 46 H 0.143 0.857 47 H 0.102 0.898 48 H 0.039 0.961 49 H 0.110 0.890 50 H 0.059 0.941 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 25.157 -15.178 10.364 31.155 hybrid contribution -0.866 1.135 -0.108 1.432 sum 24.291 -14.043 10.256 29.874 Atomic orbital electron populations 1.69806 1.08150 1.29195 1.50454 1.26098 0.96442 1.02673 0.96105 0.85365 0.79478 0.76755 0.79918 1.18190 1.20088 1.15454 1.18993 0.81496 0.94879 1.50262 0.92735 1.42041 1.05786 1.07571 1.68009 1.20905 0.90826 0.83306 0.81048 1.90510 1.71279 1.32597 1.54616 1.21799 0.90258 0.91146 1.04307 1.61697 1.14817 1.14342 1.35942 1.22283 0.85469 0.97038 1.02148 1.22200 1.01445 0.93466 0.89784 1.62226 1.13060 1.16124 1.34826 1.22001 1.01198 0.87349 0.96392 1.21645 1.02372 0.93295 0.97916 1.21220 1.01141 0.93810 0.83801 1.45867 1.64198 1.13392 1.13136 1.20279 0.76216 0.81494 0.89852 1.90681 1.47073 1.61506 1.47994 1.22302 1.03272 1.02171 0.94494 1.23031 0.92937 1.00992 1.00775 1.23009 1.03216 0.89879 1.03320 1.22056 0.87689 0.95445 1.00888 1.22161 1.00596 0.94517 0.89694 0.91198 0.77540 0.90592 0.86092 0.93119 0.88636 0.87614 0.95300 0.88987 0.95251 0.91136 0.89368 0.91746 0.92892 0.74601 0.83147 0.89358 0.85048 0.85706 0.89787 0.96137 0.89038 0.94109 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.40 13.96 21.66 0.30 -56.10 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.96 38.59 27.74 68.60 1.90 40.49 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 5 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.23 -7.75 6.52 99.48 0.65 -7.10 16 7 C -0.33 -19.15 10.16 84.04 0.85 -18.30 16 8 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -27.85 5.09 -306.99 -1.56 -29.41 16 10 C 0.45 20.38 7.48 87.66 0.66 21.03 16 11 O -0.61 -33.44 13.92 -3.05 -0.04 -33.48 16 12 C 0.06 1.73 5.45 85.55 0.47 2.20 16 13 N -0.54 -16.50 4.45 -900.28 -4.00 -20.50 16 14 C 0.06 1.23 5.61 86.31 0.48 1.71 16 15 C 0.06 1.14 5.61 86.31 0.48 1.63 16 16 N -0.54 -10.78 4.71 -895.74 -4.22 -15.00 16 17 C 0.06 0.92 4.96 86.31 0.43 1.35 16 18 C -0.11 -1.47 5.26 30.60 0.16 -1.31 16 19 C 0.12 1.85 5.67 86.38 0.49 2.34 16 20 N -0.71 -9.63 5.56 -463.05 -2.57 -12.20 16 21 C 0.53 9.77 7.61 87.66 0.67 10.44 16 22 O -0.59 -16.35 16.26 -3.04 -0.05 -16.40 16 23 C -0.20 -2.27 6.19 -11.54 -0.07 -2.34 16 24 C -0.14 -1.23 10.23 30.59 0.31 -0.92 16 25 C -0.16 -1.78 10.04 30.59 0.31 -1.48 16 26 C 0.07 1.72 5.41 86.31 0.47 2.19 16 27 C 0.06 1.82 5.26 86.31 0.45 2.27 16 28 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.39 15.10 5.76 -92.70 -0.53 14.57 16 30 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 31 H 0.12 3.02 8.03 -2.39 -0.02 3.00 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.10 1.70 8.07 -2.39 -0.02 1.68 16 34 H 0.11 1.47 8.07 -2.39 -0.02 1.45 16 35 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 1.19 8.03 -2.39 -0.02 1.17 16 37 H 0.03 0.53 8.12 -2.39 -0.02 0.51 16 38 H 0.07 0.97 6.49 -2.39 -0.02 0.95 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.42 3.20 8.47 -92.71 -0.79 2.41 16 43 H 0.15 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.12 0.84 8.14 -2.38 -0.02 0.82 16 47 H 0.08 1.37 7.67 -2.38 -0.02 1.35 16 48 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.09 2.02 6.34 -2.39 -0.02 2.01 16 50 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.06 2.51 5.85 -2.38 -0.01 2.50 16 Total: -1.00 -83.17 407.12 -4.06 -87.22 By element: Atomic # 1 Polarization: 35.36 SS G_CDS: -0.44 Total: 34.91 kcal Atomic # 6 Polarization: 13.85 SS G_CDS: 6.63 Total: 20.48 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -12.05 Total: -133.23 kcal Atomic # 8 Polarization: -49.79 SS G_CDS: -0.09 Total: -49.88 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 1.90 Total: 40.49 kcal Total: -83.17 -4.06 -87.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316951140.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.305 kcal (2) G-P(sol) polarization free energy of solvation -83.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds