Wall clock time and date at job start Tue Mar 31 2020 21:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 120.00043 * 2 1 4 4 H 1.08002 * 119.99761 * 162.77408 * 3 2 1 5 5 C 1.38807 * 119.99808 * 343.04450 * 3 2 1 6 6 N 1.31618 * 120.00233 * 346.11740 * 5 3 2 7 7 Si 1.86800 * 119.99856 * 166.11946 * 5 3 2 8 8 H 1.48503 * 109.47036 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47329 * 119.99932 * 7 5 3 10 10 H 1.48507 * 109.46946 * 239.99688 * 7 5 3 11 11 C 1.46498 * 119.99925 * 179.97438 * 2 1 3 12 12 C 1.53008 * 109.47331 * 270.00571 * 11 2 1 13 13 H 1.09000 * 110.88204 * 308.88264 * 12 11 2 14 14 C 1.55151 * 111.00374 * 72.79940 * 12 11 2 15 15 C 1.54324 * 102.94126 * 153.57860 * 14 12 11 16 16 N 1.47018 * 107.27129 * 337.80890 * 15 14 12 17 17 C 1.34783 * 125.65359 * 178.90638 * 16 15 14 18 18 O 1.21274 * 119.99963 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.99449 * 0.03583 * 17 16 15 20 20 H 1.08991 * 110.37849 * 304.30467 * 19 17 16 21 21 O 1.43921 * 110.41769 * 181.92853 * 19 17 16 22 22 C 1.43772 * 109.64340 * 215.17887 * 21 19 17 23 23 C 1.53672 * 106.82310 * 1.35047 * 22 21 19 24 24 H 1.09003 * 109.73778 * 267.25782 * 23 22 21 25 25 C 1.51242 * 112.32782 * 144.90645 * 23 22 21 26 26 O 1.42701 * 111.49800 * 294.99571 * 25 23 22 27 27 C 1.43206 * 112.74699 * 299.55580 * 26 25 23 28 28 C 1.52755 * 108.43576 * 64.91054 * 27 26 25 29 29 C 1.53102 * 110.43996 * 299.99446 * 28 27 26 30 30 H 1.09002 * 113.55902 * 283.56067 * 29 28 27 31 31 C 1.47430 * 108.70402 * 358.94174 * 16 15 14 32 32 H 1.09002 * 109.46800 * 84.90414 * 1 2 3 33 33 H 1.08999 * 109.47610 * 204.90472 * 1 2 3 34 34 H 1.09007 * 109.47156 * 324.90971 * 1 2 3 35 35 H 0.96996 * 120.00229 * 180.02562 * 6 5 3 36 36 H 1.09000 * 109.46947 * 30.00147 * 11 2 1 37 37 H 1.08997 * 109.46904 * 150.00338 * 11 2 1 38 38 H 1.08996 * 110.72654 * 271.94493 * 14 12 11 39 39 H 1.09004 * 110.72330 * 35.21597 * 14 12 11 40 40 H 1.09002 * 109.88441 * 218.38955 * 15 14 12 41 41 H 1.08993 * 109.88296 * 97.22690 * 15 14 12 42 42 H 1.09000 * 109.98876 * 120.68665 * 22 21 19 43 43 H 1.09003 * 109.98856 * 242.00776 * 22 21 19 44 44 H 1.09000 * 109.07661 * 55.50911 * 25 23 22 45 45 H 1.09001 * 109.07974 * 174.46827 * 25 23 22 46 46 H 1.08998 * 109.64360 * 184.59742 * 27 26 25 47 47 H 1.09009 * 109.63699 * 305.01620 * 27 26 25 48 48 H 1.08997 * 109.30409 * 60.39030 * 28 27 26 49 49 H 1.09004 * 109.30152 * 179.97438 * 28 27 26 50 50 H 1.09009 * 110.36444 * 265.28723 * 31 16 15 51 51 H 1.08997 * 110.46428 * 143.01412 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1934 1.2069 0.2770 5 6 1.5009 2.3619 -0.3506 6 7 0.3249 2.3143 -0.9397 7 14 2.2969 4.0121 0.0138 8 1 3.6076 3.7938 0.6768 9 1 2.5015 4.7541 -1.2562 10 1 1.4139 4.8002 0.9108 11 6 2.1975 -1.2687 0.0006 12 6 2.4524 -1.7099 1.4433 13 1 2.9023 -0.9035 2.0224 14 6 1.1448 -2.2123 2.1105 15 6 1.6598 -3.1938 3.1843 16 7 3.0029 -3.6266 2.7719 17 6 3.8006 -4.4710 3.4555 18 8 4.8946 -4.7590 3.0186 19 6 3.3328 -5.0573 4.7626 20 1 3.0556 -4.2640 5.4568 21 8 4.3578 -5.8898 5.3349 22 6 3.7532 -7.0075 6.0074 23 6 2.2347 -6.8764 5.8108 24 1 1.8003 -6.3337 6.6504 25 6 1.5560 -8.2202 5.6654 26 8 1.9758 -8.8924 4.4787 27 6 1.6720 -8.1563 3.2885 28 6 2.4843 -6.8627 3.2999 29 6 2.1292 -6.0192 4.5273 30 1 1.1755 -5.4991 4.4374 31 6 3.3332 -2.9834 1.4871 32 1 -0.3633 0.0913 -1.0236 33 1 -0.3634 -0.9321 0.4327 34 1 -0.3634 0.8409 0.5908 35 1 -0.1283 3.1360 -1.1850 36 1 1.6084 -2.0286 -0.5130 37 1 3.1499 -1.1386 -0.5133 38 1 0.6045 -1.3853 2.5712 39 1 0.5158 -2.7290 1.3856 40 1 0.9956 -4.0558 3.2477 41 1 1.7123 -2.6920 4.1504 42 1 4.1063 -7.9412 5.5697 43 1 3.9952 -6.9785 7.0699 44 1 1.7999 -8.8378 6.5298 45 1 0.4768 -8.0721 5.6282 46 1 1.9386 -8.7487 2.4132 47 1 0.6073 -7.9239 3.2632 48 1 3.5468 -7.1046 3.3221 49 1 2.2638 -6.2908 2.3985 50 1 3.0853 -3.6449 0.6569 51 1 4.3893 -2.7155 1.4555 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317846066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:57 Heat of formation + Delta-G solvation = -112.650842 kcal Electronic energy + Delta-G solvation = -31161.076646 eV Core-core repulsion = 27060.540958 eV Total energy + Delta-G solvation = -4100.535687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.27341 -40.61957 -39.03243 -38.30091 -37.10415 -34.47017 -33.77364 -32.91981 -32.08248 -30.52743 -29.87573 -27.92854 -27.10846 -26.43916 -25.12047 -24.41230 -23.16420 -22.91955 -21.21940 -20.71598 -20.19371 -18.65898 -18.38078 -17.80833 -17.38144 -17.20512 -17.09116 -16.69284 -16.39952 -16.29639 -15.94155 -15.53281 -15.43790 -14.93341 -14.64175 -14.59691 -14.28862 -14.23229 -13.81156 -13.70889 -13.61078 -13.51478 -13.23732 -13.16148 -12.95718 -12.79465 -12.71203 -12.52415 -12.47750 -12.16108 -12.09653 -11.90445 -11.76511 -11.71431 -11.59372 -11.37637 -11.23138 -11.02037 -10.61285 -10.56556 -10.48562 -9.70074 -8.78820 -7.80364 -5.22994 1.44846 1.45808 1.47813 1.56923 1.70431 2.51993 2.79867 2.96278 3.11626 3.29561 3.32243 3.56573 3.59329 3.70961 3.80013 3.90386 3.96132 4.00041 4.12272 4.17230 4.21722 4.32441 4.34356 4.46514 4.47728 4.55815 4.61321 4.65012 4.65326 4.70394 4.74071 4.82624 4.83720 4.86631 4.95788 4.97827 5.02730 5.08065 5.11902 5.22399 5.24018 5.31630 5.42771 5.54070 5.64529 5.79573 5.82290 6.19825 6.34262 6.45621 7.05628 7.19386 7.93447 8.32298 9.22719 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023797 B = 0.002435 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.326485 B =11495.357061 C =11924.491339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.253 4.253 4 H 0.068 0.932 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.962 3.038 8 H -0.271 1.271 9 H -0.295 1.295 10 H -0.290 1.290 11 C 0.162 3.838 12 C -0.108 4.108 13 H 0.059 0.941 14 C -0.112 4.112 15 C 0.098 3.902 16 N -0.610 5.610 17 C 0.526 3.474 18 O -0.581 6.581 19 C 0.068 3.932 20 H 0.117 0.883 21 O -0.389 6.389 22 C 0.050 3.950 23 C -0.145 4.145 24 H 0.126 0.874 25 C 0.066 3.934 26 O -0.398 6.398 27 C 0.064 3.936 28 C -0.153 4.153 29 C -0.098 4.098 30 H 0.143 0.857 31 C 0.117 3.883 32 H -0.006 1.006 33 H 0.041 0.959 34 H 0.019 0.981 35 H 0.246 0.754 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.095 0.905 47 H 0.079 0.921 48 H 0.046 0.954 49 H 0.071 0.929 50 H 0.076 0.924 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 -21.977 16.269 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.340 5.340 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.791 3.209 8 H -0.196 1.196 9 H -0.222 1.222 10 H -0.217 1.217 11 C 0.035 3.965 12 C -0.129 4.129 13 H 0.078 0.922 14 C -0.149 4.149 15 C -0.023 4.023 16 N -0.344 5.344 17 C 0.315 3.685 18 O -0.460 6.460 19 C 0.008 3.992 20 H 0.134 0.866 21 O -0.308 6.308 22 C -0.026 4.026 23 C -0.163 4.163 24 H 0.144 0.856 25 C -0.010 4.010 26 O -0.317 6.317 27 C -0.012 4.012 28 C -0.191 4.191 29 C -0.117 4.117 30 H 0.160 0.840 31 C -0.006 4.006 32 H 0.012 0.988 33 H 0.059 0.941 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.129 0.871 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.097 0.903 48 H 0.065 0.935 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.099 -22.219 16.033 27.574 hybrid contribution 0.624 1.734 -0.365 1.879 sum -2.475 -20.484 15.668 25.908 Atomic orbital electron populations 1.20592 0.82162 0.96455 0.97269 1.44128 1.02387 1.01313 1.86128 1.19534 0.95200 0.85967 1.37609 0.91460 1.25582 0.98193 1.01107 1.00159 1.70268 1.17137 1.26338 1.45036 0.85275 0.77962 0.80656 0.76991 1.19577 1.22249 1.21734 1.20733 0.95517 0.87124 0.93082 1.22860 0.95923 0.94793 0.99372 0.92226 1.22590 0.96583 0.98233 0.97539 1.22418 0.81980 0.98964 0.98960 1.48517 1.18363 1.44826 1.22739 1.20565 0.83705 0.78077 0.86125 1.90692 1.23140 1.61582 1.70603 1.23177 0.88862 0.95430 0.91770 0.86565 1.88669 1.31349 1.38439 1.72318 1.23324 0.92711 0.88780 0.97747 1.22801 0.95831 0.98896 0.98804 0.85592 1.22177 0.98872 0.91706 0.88274 1.88102 1.83000 1.45472 1.15090 1.22605 0.99049 0.91489 0.88089 1.22131 1.00748 0.98075 0.98154 1.23096 0.98287 0.94863 0.95432 0.83979 1.22162 0.99119 0.93715 0.85602 0.98776 0.94052 0.96183 0.94426 0.92332 0.94447 0.90327 0.89688 0.88146 0.89897 0.91936 0.88934 0.87064 0.90232 0.88720 0.90278 0.93480 0.91068 0.90552 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.26 8.73 127.77 1.12 9.38 16 2 N -0.62 -29.04 2.90 -726.92 -2.11 -31.15 16 3 C -0.25 -13.53 9.71 84.03 0.82 -12.71 16 4 H 0.07 3.56 7.87 -2.91 -0.02 3.54 16 5 C -0.06 -3.10 5.11 84.86 0.43 -2.66 16 6 N -0.94 -54.63 10.41 21.65 0.23 -54.40 16 7 Si 0.96 44.92 29.57 68.60 2.03 46.95 16 8 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 9 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 10 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 11 C 0.16 5.98 5.15 86.38 0.44 6.43 16 12 C -0.11 -3.27 3.26 -9.40 -0.03 -3.30 16 13 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 14 C -0.11 -2.57 5.09 31.78 0.16 -2.41 16 15 C 0.10 1.71 6.14 86.73 0.53 2.24 16 16 N -0.61 -15.07 3.33 -811.80 -2.70 -17.77 16 17 C 0.53 14.99 5.53 87.66 0.49 15.47 16 18 O -0.58 -22.72 16.81 15.39 0.26 -22.46 16 19 C 0.07 1.40 2.90 30.84 0.09 1.49 16 20 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 21 O -0.39 -10.03 10.20 -130.58 -1.33 -11.36 16 22 C 0.05 0.84 6.78 72.21 0.49 1.33 16 23 C -0.14 -1.44 2.98 -10.56 -0.03 -1.47 16 24 H 0.13 0.57 8.14 -2.39 -0.02 0.55 16 25 C 0.07 0.58 6.11 71.41 0.44 1.02 16 26 O -0.40 -6.28 10.46 -148.98 -1.56 -7.84 16 27 C 0.06 0.88 6.82 71.90 0.49 1.37 16 28 C -0.15 -2.72 4.11 30.55 0.13 -2.59 16 29 C -0.10 -1.29 3.00 -9.19 -0.03 -1.31 16 30 H 0.14 0.98 6.40 -2.39 -0.02 0.97 16 31 C 0.12 3.32 6.37 86.85 0.55 3.87 16 32 H -0.01 -0.32 7.50 -2.39 -0.02 -0.33 16 33 H 0.04 1.50 6.54 -2.39 -0.02 1.49 16 34 H 0.02 1.00 6.94 -2.38 -0.02 0.99 16 35 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 36 H 0.06 1.94 7.90 -2.39 -0.02 1.92 16 37 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 38 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.08 1.80 7.54 -2.39 -0.02 1.78 16 40 H 0.10 1.09 6.17 -2.39 -0.01 1.08 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.22 7.62 -2.39 -0.02 1.21 16 43 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 44 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.39 8.13 -2.39 -0.02 0.37 16 46 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 48 H 0.05 1.22 6.94 -2.39 -0.02 1.21 16 49 H 0.07 1.34 7.77 -2.38 -0.02 1.32 16 50 H 0.08 2.02 8.04 -2.38 -0.02 2.00 16 51 H 0.05 1.75 8.04 -2.39 -0.02 1.73 16 Total: -1.00 -75.85 385.83 1.80 -74.05 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.91 Total: 7.85 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 6.09 Total: 16.12 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -4.58 Total: -103.32 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -2.63 Total: -41.66 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.85 1.80 -74.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317846066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.603 kcal (2) G-P(sol) polarization free energy of solvation -75.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds