Wall clock time and date at job start Tue Mar 31 2020 22:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86800 * 120.00401 * 2 1 4 4 H 1.48496 * 109.47028 * 270.00179 * 3 2 1 5 5 H 1.48501 * 109.46883 * 29.99616 * 3 2 1 6 6 H 1.48499 * 109.47504 * 149.99671 * 3 2 1 7 7 C 1.38816 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00124 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00085 * 180.02562 * 7 2 1 10 10 C 1.46493 * 120.00030 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47418 * 171.42456 * 10 9 7 12 12 H 1.08996 * 109.99412 * 26.17084 * 11 10 9 13 13 C 1.54316 * 109.77576 * 147.32266 * 11 10 9 14 14 C 1.55154 * 102.86021 * 141.88719 * 13 11 10 15 15 C 1.54910 * 101.58497 * 324.30602 * 14 13 11 16 16 N 1.47019 * 109.88133 * 265.07555 * 11 10 9 17 17 C 1.34777 * 125.64924 * 61.67988 * 16 11 10 18 18 O 1.21284 * 119.99973 * 7.55047 * 17 16 11 19 19 C 1.50704 * 120.00042 * 187.27490 * 17 16 11 20 20 N 1.46501 * 109.47053 * 313.26101 * 19 17 16 21 21 C 1.34776 * 119.99707 * 301.73754 * 20 19 17 22 22 N 1.34780 * 119.99647 * 175.34766 * 21 20 19 23 23 O 1.21587 * 120.00358 * 355.33964 * 21 20 19 24 24 C 1.52999 * 109.47196 * 193.25898 * 19 17 16 25 25 C 1.52997 * 109.46987 * 180.02562 * 24 19 17 26 26 C 1.53001 * 109.47165 * 60.00409 * 25 24 19 27 27 C 1.52999 * 109.46834 * 299.99684 * 26 25 24 28 28 C 1.53002 * 109.47294 * 60.00307 * 27 26 25 29 29 H 0.97006 * 119.99995 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99924 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46944 * 51.42588 * 10 9 7 32 32 H 1.09006 * 109.47615 * 291.42552 * 10 9 7 33 33 H 1.09001 * 110.92100 * 23.47808 * 13 11 10 34 34 H 1.08990 * 110.59191 * 260.14734 * 13 11 10 35 35 H 1.08998 * 111.00771 * 206.23109 * 14 13 11 36 36 H 1.08998 * 111.03905 * 82.39362 * 14 13 11 37 37 H 1.09000 * 110.36843 * 278.16962 * 15 14 13 38 38 H 1.09003 * 110.46041 * 155.89638 * 15 14 13 39 39 H 0.96995 * 119.99554 * 121.73492 * 20 19 17 40 40 H 0.96997 * 119.99847 * 359.97438 * 22 21 20 41 41 H 0.96998 * 120.00077 * 180.02562 * 22 21 20 42 42 H 1.09004 * 109.46985 * 300.00434 * 24 19 17 43 43 H 1.08999 * 109.46736 * 60.00025 * 24 19 17 44 44 H 1.08996 * 109.47286 * 299.99836 * 25 24 19 45 45 H 1.09008 * 109.46863 * 179.97438 * 25 24 19 46 46 H 1.08997 * 109.47190 * 180.02562 * 26 25 24 47 47 H 1.08996 * 109.47487 * 59.99550 * 26 25 24 48 48 H 1.09010 * 109.47483 * 300.00366 * 27 26 25 49 49 H 1.08994 * 109.47425 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.47060 * 180.02562 * 28 27 26 51 51 H 1.08996 * 109.46926 * 59.99553 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0014 9 7 3.3796 -1.2022 0.0011 10 6 4.1120 -2.4709 0.0022 11 6 5.6024 -2.1996 -0.2125 12 1 5.8527 -1.1975 0.1355 13 6 6.4391 -3.2475 0.5512 14 6 7.6188 -3.5210 -0.4188 15 6 6.9191 -3.4165 -1.7969 16 7 5.9341 -2.3311 -1.6387 17 6 5.4264 -1.5797 -2.6358 18 8 4.7306 -0.6203 -2.3782 19 6 5.7284 -1.9280 -4.0706 20 7 7.1626 -2.1877 -4.2186 21 6 8.0574 -1.2351 -3.8894 22 7 9.3770 -1.5052 -3.9361 23 8 7.6742 -0.1321 -3.5504 24 6 5.3254 -0.7610 -4.9743 25 6 5.6314 -1.1149 -6.4310 26 6 4.8426 -2.3640 -6.8290 27 6 5.2455 -3.5309 -5.9252 28 6 4.9395 -3.1771 -4.4685 29 1 -0.4850 0.8401 0.0004 30 1 3.8646 -0.3622 0.0014 31 1 3.7390 -3.1065 -0.8010 32 1 3.9682 -2.9727 0.9591 33 1 5.8623 -4.1564 0.7226 34 1 6.8017 -2.8361 1.4930 35 1 8.0291 -4.5188 -0.2636 36 1 8.3941 -2.7618 -0.3158 37 1 6.4162 -4.3528 -2.0390 38 1 7.6415 -3.1632 -2.5728 39 1 7.4680 -3.0452 -4.5535 40 1 9.6826 -2.3853 -4.2062 41 1 10.0210 -0.8198 -3.6988 42 1 4.2584 -0.5677 -4.8641 43 1 5.8871 0.1290 -4.6905 44 1 6.6984 -1.3084 -6.5415 45 1 5.3439 -0.2836 -7.0749 46 1 5.0609 -2.6163 -7.8666 47 1 3.7757 -2.1705 -6.7185 48 1 6.3126 -3.7245 -6.0356 49 1 4.6839 -4.4209 -6.2089 50 1 5.2270 -4.0083 -3.8246 51 1 3.8726 -2.9836 -4.3580 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319114437.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:29 Heat of formation + Delta-G solvation = -39.420757 kcal Electronic energy + Delta-G solvation = -33077.819432 eV Core-core repulsion = 29012.751991 eV Total energy + Delta-G solvation = -4065.067441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.32739 -39.23089 -38.21854 -36.77479 -34.56177 -34.11242 -33.45439 -31.46931 -31.33495 -30.73201 -29.63401 -29.07627 -25.19860 -24.13081 -22.82002 -22.50177 -21.85176 -21.26265 -20.99513 -19.50939 -19.00155 -18.52163 -17.53870 -17.12700 -16.51944 -16.38003 -15.53996 -15.19247 -14.99472 -14.58411 -14.42013 -14.34219 -13.83962 -13.82679 -13.61462 -13.34203 -13.24801 -12.86699 -12.61428 -12.46120 -12.33295 -12.26676 -12.17640 -11.80468 -11.75467 -11.37471 -11.33373 -11.20623 -10.73891 -10.72300 -10.63633 -10.59579 -10.41493 -10.29266 -10.07064 -9.91320 -9.84659 -9.60183 -9.36958 -8.73827 -8.65367 -8.19372 -6.94660 -5.55542 -2.86965 2.52598 3.04772 3.26328 3.30117 3.62281 3.67757 3.76173 4.25490 4.44552 4.55253 4.57155 4.61683 4.73492 4.86377 4.90765 5.03080 5.09387 5.16268 5.27074 5.30840 5.37656 5.40866 5.48539 5.53456 5.64182 5.66671 5.75684 5.81010 5.84445 5.87752 5.96382 5.98428 6.01130 6.05166 6.08205 6.12135 6.18261 6.24587 6.37164 6.42573 6.49473 6.62443 6.71175 6.77450 6.97066 7.74978 7.94166 8.19846 8.49454 8.63564 8.72407 9.46588 10.20675 10.41153 11.63216 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010854 B = 0.005073 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.172123 B = 5518.200954 C = 6515.099599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.005 3.995 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.281 1.281 7 C -0.233 4.233 8 H 0.085 0.915 9 N -0.743 5.743 10 C 0.156 3.844 11 C 0.126 3.874 12 H 0.072 0.928 13 C -0.123 4.123 14 C -0.133 4.133 15 C 0.093 3.907 16 N -0.611 5.611 17 C 0.529 3.471 18 O -0.484 6.484 19 C 0.193 3.807 20 N -0.732 5.732 21 C 0.701 3.299 22 N -0.870 5.870 23 O -0.569 6.569 24 C -0.120 4.120 25 C -0.111 4.111 26 C -0.123 4.123 27 C -0.113 4.113 28 C -0.122 4.122 29 H 0.256 0.744 30 H 0.366 0.634 31 H 0.029 0.971 32 H 0.025 0.975 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.078 0.922 39 H 0.395 0.605 40 H 0.394 0.606 41 H 0.414 0.586 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.069 0.931 50 H 0.074 0.926 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.176 -13.407 -12.653 29.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.190 4.190 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.225 1.225 6 H -0.208 1.208 7 C -0.363 4.363 8 H 0.102 0.898 9 N -0.389 5.389 10 C 0.027 3.973 11 C 0.022 3.978 12 H 0.090 0.910 13 C -0.161 4.161 14 C -0.171 4.171 15 C -0.031 4.031 16 N -0.348 5.348 17 C 0.313 3.687 18 O -0.354 6.354 19 C 0.103 3.897 20 N -0.392 5.392 21 C 0.400 3.600 22 N -0.439 5.439 23 O -0.444 6.444 24 C -0.159 4.159 25 C -0.149 4.149 26 C -0.161 4.161 27 C -0.150 4.150 28 C -0.160 4.160 29 H 0.066 0.934 30 H 0.200 0.800 31 H 0.047 0.953 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.096 0.904 39 H 0.231 0.769 40 H 0.221 0.779 41 H 0.246 0.754 42 H 0.100 0.900 43 H 0.110 0.890 44 H 0.076 0.924 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 21.981 -11.961 -12.299 27.883 hybrid contribution 1.214 0.525 -0.182 1.335 sum 23.195 -11.436 -12.481 28.715 Atomic orbital electron populations 1.69720 1.05121 1.25545 1.58612 1.24563 0.95108 0.97150 1.02154 0.86445 0.78663 0.84682 0.78088 1.20759 1.22465 1.20766 1.18989 0.80845 0.94356 1.42093 0.89753 1.42690 1.03837 1.01990 1.90386 1.20982 0.88149 0.90053 0.98073 1.21925 0.96260 0.99220 0.80351 0.91007 1.22653 0.96022 0.99261 0.98202 1.22765 0.97721 1.01967 0.94656 1.22551 0.91595 0.90709 0.98269 1.48392 1.44157 1.35531 1.06687 1.20112 0.80323 0.82432 0.85785 1.90845 1.36165 1.25276 1.83087 1.20382 0.79098 0.97502 0.92719 1.45382 1.05464 1.17159 1.71158 1.15991 0.81225 0.84487 0.78332 1.43024 1.05865 1.18399 1.76572 1.91058 1.78402 1.21697 1.53233 1.21814 1.03474 0.97799 0.92790 1.21466 0.99748 0.97506 0.96172 1.21594 1.00873 0.94972 0.98618 1.21493 1.00955 0.98520 0.94045 1.21830 1.01669 0.95441 0.97054 0.93406 0.79989 0.95257 0.95738 0.90189 0.90251 0.90282 0.91083 0.92131 0.90421 0.76879 0.77913 0.75402 0.89966 0.89015 0.92422 0.91859 0.92087 0.91435 0.92270 0.91260 0.90768 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -31.74 13.97 55.49 0.78 -30.97 16 2 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 3 Si 0.89 25.73 27.74 -169.99 -4.71 21.02 16 4 H -0.28 -8.36 7.11 56.52 0.40 -7.96 16 5 H -0.30 -8.46 7.11 56.52 0.40 -8.06 16 6 H -0.28 -7.88 6.52 56.52 0.37 -7.51 16 7 C -0.23 -7.23 10.47 -15.06 -0.16 -7.39 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 9 N -0.74 -20.02 4.35 -59.91 -0.26 -20.28 16 10 C 0.16 3.32 5.67 -4.04 -0.02 3.30 16 11 C 0.13 2.18 3.08 -66.96 -0.21 1.98 16 12 H 0.07 1.44 7.66 -51.93 -0.40 1.05 16 13 C -0.12 -1.48 6.31 -24.90 -0.16 -1.64 16 14 C -0.13 -1.24 7.08 -24.58 -0.17 -1.41 16 15 C 0.09 0.96 5.84 -2.53 -0.01 0.95 16 16 N -0.61 -9.66 2.98 -163.02 -0.49 -10.15 16 17 C 0.53 9.81 5.11 -10.98 -0.06 9.75 16 18 O -0.48 -11.91 14.63 5.55 0.08 -11.82 16 19 C 0.19 2.60 0.28 -132.97 -0.04 2.56 16 20 N -0.73 -7.02 1.82 -53.50 -0.10 -7.12 16 21 C 0.70 8.18 7.20 -86.92 -0.63 7.55 16 22 N -0.87 -5.69 8.88 27.63 0.25 -5.44 16 23 O -0.57 -10.09 14.39 5.29 0.08 -10.01 16 24 C -0.12 -1.82 3.93 -26.73 -0.11 -1.93 16 25 C -0.11 -1.23 5.77 -26.73 -0.15 -1.38 16 26 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 27 C -0.11 -0.89 5.75 -26.73 -0.15 -1.05 16 28 C -0.12 -1.34 4.72 -26.73 -0.13 -1.46 16 29 H 0.26 8.26 8.31 -40.82 -0.34 7.92 16 30 H 0.37 10.26 4.79 -40.82 -0.20 10.07 16 31 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 32 H 0.03 0.51 7.72 -51.93 -0.40 0.11 16 33 H 0.08 0.90 7.76 -51.93 -0.40 0.49 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.55 7.48 -51.93 -0.39 0.16 16 38 H 0.08 0.67 4.42 -51.93 -0.23 0.44 16 39 H 0.40 2.33 6.94 -40.82 -0.28 2.04 16 40 H 0.39 1.12 8.85 -40.82 -0.36 0.76 16 41 H 0.41 2.55 8.93 -40.82 -0.36 2.19 16 42 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 43 H 0.09 1.69 6.14 -51.93 -0.32 1.37 16 44 H 0.06 0.59 7.60 -51.93 -0.39 0.19 16 45 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.06 0.36 6.83 -51.92 -0.35 0.00 16 49 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.07 0.71 6.86 -51.93 -0.36 0.36 16 51 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 381.57 15.07 5.75 5.75 Total: -1.00 -41.79 381.57 -9.13 -50.91 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -8.25 Total: 9.49 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -2.25 Total: 8.62 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: 0.18 Total: -73.96 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.16 Total: -21.84 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.71 Total: 21.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -41.79 -9.13 -50.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319114437.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.492 kcal (2) G-P(sol) polarization free energy of solvation -41.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds