Wall clock time and date at job start Tue Mar 31 2020 21:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34781 * 120.00124 * 2 1 4 4 O 1.21348 * 120.00312 * 173.18986 * 3 2 1 5 5 C 1.49451 * 119.99412 * 353.18686 * 3 2 1 6 6 O 1.21345 * 120.00309 * 359.50502 * 5 3 2 7 7 N 1.34784 * 119.99745 * 179.49672 * 5 3 2 8 8 C 1.46491 * 119.99940 * 175.24495 * 7 5 3 9 9 C 1.53002 * 109.47194 * 184.60938 * 8 7 5 10 10 C 1.50707 * 115.54778 * 306.35676 * 9 8 7 11 11 H 1.07991 * 120.00169 * 144.05809 * 10 9 8 12 12 C 1.37882 * 119.99889 * 324.05992 * 10 9 8 13 13 N 1.31510 * 119.99878 * 3.30338 * 12 10 9 14 14 Si 1.86798 * 119.99825 * 183.30497 * 12 10 9 15 15 H 1.48497 * 109.47115 * 90.00112 * 14 12 10 16 16 H 1.48508 * 109.46859 * 209.99767 * 14 12 10 17 17 H 1.48495 * 109.47352 * 329.99768 * 14 12 10 18 18 C 1.53003 * 117.50245 * 160.69158 * 9 8 7 19 19 C 1.52999 * 117.50455 * 92.02463 * 9 8 7 20 20 C 1.46507 * 120.00248 * 180.02562 * 2 1 3 21 21 C 1.52996 * 109.47083 * 127.09142 * 20 2 1 22 22 C 1.53002 * 109.47069 * 299.99630 * 21 20 2 23 23 C 1.52996 * 109.47218 * 300.00325 * 22 21 20 24 24 C 1.53002 * 109.47218 * 180.02562 * 23 22 21 25 25 O 1.42899 * 109.46993 * 64.99764 * 24 23 22 26 26 C 1.52996 * 109.47031 * 60.00033 * 23 22 21 27 27 C 1.52995 * 109.47384 * 299.99676 * 26 23 22 28 28 H 1.08997 * 109.47615 * 83.10533 * 1 2 3 29 29 H 1.09001 * 109.47028 * 203.10206 * 1 2 3 30 30 H 1.08999 * 109.47183 * 323.09959 * 1 2 3 31 31 H 0.97003 * 119.99923 * 354.97115 * 7 5 3 32 32 H 1.09002 * 109.47457 * 304.60168 * 8 7 5 33 33 H 1.08994 * 109.47670 * 64.60849 * 8 7 5 34 34 H 0.97007 * 120.00211 * 185.00653 * 13 12 10 35 35 H 1.08997 * 117.49327 * 359.97438 * 18 9 8 36 36 H 1.08996 * 117.50145 * 145.02113 * 18 9 8 37 37 H 1.08989 * 117.50201 * 214.98354 * 19 9 8 38 38 H 1.08997 * 117.49445 * 359.97438 * 19 9 8 39 39 H 1.09000 * 109.46440 * 247.09113 * 20 2 1 40 40 H 1.08997 * 109.47894 * 60.00239 * 21 20 2 41 41 H 1.09005 * 109.46985 * 180.02562 * 21 20 2 42 42 H 1.08997 * 109.47138 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47104 * 60.00597 * 22 21 20 44 44 H 1.08997 * 109.47305 * 300.00149 * 23 22 21 45 45 H 1.08996 * 109.47218 * 185.00165 * 24 23 22 46 46 H 1.09007 * 109.47048 * 305.00228 * 24 23 22 47 47 H 0.96701 * 113.99896 * 179.97438 * 25 24 23 48 48 H 1.09006 * 109.47421 * 179.97438 * 26 23 22 49 49 H 1.09004 * 109.47597 * 60.00105 * 26 23 22 50 50 H 1.09003 * 109.47524 * 300.00400 * 27 26 23 51 51 H 1.08997 * 109.47430 * 179.97438 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3460 1.1710 0.1246 5 6 1.3994 2.4569 -0.1536 6 8 0.1934 2.4526 -0.2872 7 7 2.0722 3.6248 -0.1434 8 6 1.3628 4.8809 -0.3977 9 6 2.3676 6.0339 -0.4431 10 6 3.2731 6.1544 0.7555 11 1 4.2973 6.4725 0.6287 12 6 2.7939 5.8586 2.0141 13 7 1.5669 5.4091 2.1616 14 14 3.8877 6.0962 3.5096 15 1 3.7121 7.4730 4.0376 16 1 3.5137 5.1127 4.5576 17 1 5.3067 5.8917 3.1226 18 6 1.9265 7.3290 -1.1282 19 6 2.9475 6.4126 -1.8074 20 6 2.1975 -1.2688 -0.0006 21 6 3.2059 -1.2749 -1.1512 22 6 2.4646 -1.1135 -2.4799 23 6 1.4800 -2.2708 -2.6584 24 6 0.7391 -2.1098 -3.9873 25 8 1.6665 -2.2323 -5.0676 26 6 0.4716 -2.2646 -1.5077 27 6 1.2128 -2.4261 -0.1791 28 1 -0.3634 0.1234 -1.0202 29 1 -0.3633 -0.9453 0.4032 30 1 -0.3633 0.8218 0.6170 31 1 3.0254 3.6338 0.0363 32 1 0.8406 4.8165 -1.3523 33 1 0.6415 5.0589 0.3998 34 1 1.2049 5.2699 3.0508 35 1 0.9206 7.3593 -1.5469 36 1 2.2916 8.2680 -0.7123 37 1 3.9836 6.7491 -1.8380 38 1 2.6135 5.8400 -2.6726 39 1 2.7256 -1.3837 0.9460 40 1 3.9075 -0.4504 -1.0241 41 1 3.7507 -2.2191 -1.1519 42 1 3.1829 -1.1183 -3.2996 43 1 1.9196 -0.1696 -2.4795 44 1 2.0250 -3.2148 -2.6587 45 1 -0.0239 -2.8832 -4.0740 46 1 0.2670 -1.1279 -4.0235 47 1 1.2653 -2.1410 -5.9427 48 1 -0.2302 -3.0889 -1.6351 49 1 -0.0735 -1.3207 -1.5073 50 1 1.7579 -3.3700 -0.1794 51 1 0.4945 -2.4212 0.6407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324125018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:22 Heat of formation + Delta-G solvation = -102.345813 kcal Electronic energy + Delta-G solvation = -31500.207638 eV Core-core repulsion = 27400.118810 eV Total energy + Delta-G solvation = -4100.088828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.11281 -40.36742 -39.09160 -38.43821 -37.63696 -35.66482 -34.61484 -34.12019 -32.36369 -31.71189 -28.51604 -27.91577 -27.52003 -26.29304 -24.44475 -23.69315 -22.97889 -21.91197 -21.26477 -21.06123 -20.06966 -18.84745 -18.27745 -17.92582 -17.64075 -17.34287 -16.76738 -16.66214 -16.37772 -15.96990 -15.81700 -15.62733 -15.14055 -15.02018 -14.86483 -14.58230 -14.34171 -14.04394 -13.79810 -13.63288 -13.43207 -13.34520 -13.17830 -13.08439 -12.95856 -12.84474 -12.63192 -12.43751 -12.32668 -12.13839 -12.06213 -11.96365 -11.51488 -11.32824 -11.24184 -11.08571 -10.93819 -10.77504 -10.72715 -10.25417 -10.11164 -9.82676 -9.61242 -8.00579 -6.22575 0.53447 1.39733 1.44267 1.49492 1.51404 2.31743 2.39759 2.67182 3.03931 3.33061 3.51543 3.65336 3.74035 3.78068 3.89203 4.07624 4.22490 4.23202 4.35968 4.38991 4.41515 4.49288 4.52321 4.53632 4.63804 4.70623 4.73822 4.75162 4.77531 4.79469 4.94887 4.98005 5.05503 5.08467 5.10427 5.17692 5.19894 5.24884 5.27124 5.36510 5.48450 5.49988 5.57793 5.60338 5.72485 5.92738 6.05731 6.33907 6.51815 6.78785 6.91103 6.91688 7.21577 7.42227 8.88186 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015007 B = 0.003290 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.396431 B = 8509.243125 C = 9294.004435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.572 5.572 3 C 0.505 3.495 4 O -0.546 6.546 5 C 0.487 3.513 6 O -0.553 6.553 7 N -0.650 5.650 8 C 0.176 3.824 9 C 0.003 3.997 10 C -0.507 4.507 11 H 0.055 0.945 12 C 0.037 3.963 13 N -0.890 5.890 14 Si 0.946 3.054 15 H -0.275 1.275 16 H -0.290 1.290 17 H -0.271 1.271 18 C -0.189 4.189 19 C -0.191 4.191 20 C 0.142 3.858 21 C -0.138 4.138 22 C -0.099 4.099 23 C -0.081 4.081 24 C 0.078 3.922 25 O -0.594 6.594 26 C -0.133 4.133 27 C -0.115 4.115 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.066 0.934 31 H 0.406 0.594 32 H 0.031 0.969 33 H 0.088 0.912 34 H 0.259 0.741 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.033 0.967 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.037 0.963 47 H 0.394 0.606 48 H 0.092 0.908 49 H 0.077 0.923 50 H 0.101 0.899 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.832 -18.887 -8.198 21.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.306 5.306 3 C 0.287 3.713 4 O -0.424 6.424 5 C 0.267 3.733 6 O -0.435 6.435 7 N -0.297 5.297 8 C 0.053 3.947 9 C 0.002 3.998 10 C -0.544 4.544 11 H 0.073 0.927 12 C -0.165 4.165 13 N -0.527 5.527 14 Si 0.772 3.228 15 H -0.201 1.201 16 H -0.216 1.216 17 H -0.196 1.196 18 C -0.228 4.228 19 C -0.228 4.228 20 C 0.040 3.960 21 C -0.176 4.176 22 C -0.137 4.137 23 C -0.099 4.099 24 C 0.001 3.999 25 O -0.402 6.402 26 C -0.170 4.170 27 C -0.152 4.152 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.241 0.759 32 H 0.049 0.951 33 H 0.106 0.894 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.071 0.929 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.244 0.756 48 H 0.111 0.889 49 H 0.095 0.905 50 H 0.120 0.880 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.742 -19.091 -7.607 21.091 hybrid contribution 0.697 0.979 0.471 1.291 sum -4.045 -18.113 -7.136 19.884 Atomic orbital electron populations 1.22440 0.77210 1.04183 1.02797 1.47809 1.08559 1.04460 1.69743 1.20222 0.87104 0.85673 0.78258 1.90666 1.14897 1.87474 1.49347 1.20257 0.87568 0.85789 0.79669 1.90611 1.13937 1.87555 1.51355 1.45585 1.13228 1.05446 1.65479 1.20929 0.94708 0.80902 0.98155 1.19274 0.96949 0.92490 0.91055 1.20726 0.96994 1.45758 0.90912 0.92679 1.25535 0.96287 0.93650 1.00988 1.70001 1.15815 1.44202 1.22701 0.85731 0.79574 0.77712 0.79738 1.20110 1.21582 1.19589 1.22958 0.97935 0.95927 1.05955 1.22957 0.97891 1.05143 0.96852 1.21369 0.93643 0.82274 0.98718 1.21929 0.98217 1.03200 0.94225 1.21335 0.98125 0.97793 0.96444 1.21126 0.96559 0.98692 0.93550 1.22279 0.91191 0.99887 0.86546 1.86438 1.39317 1.96059 1.18415 1.22020 0.97783 1.04439 0.92759 1.21835 0.98137 0.96743 0.98501 0.91576 0.87398 0.91528 0.75859 0.95067 0.89379 0.93146 0.90008 0.90275 0.90068 0.89776 0.91014 0.92568 0.89105 0.92918 0.94861 0.90153 0.91500 0.94435 0.75647 0.88910 0.90471 0.88038 0.89068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.84 7.15 127.77 0.91 2.75 16 2 N -0.57 -16.55 2.29 -824.17 -1.89 -18.44 16 3 C 0.50 19.30 7.10 87.27 0.62 19.92 16 4 O -0.55 -23.04 14.39 -3.24 -0.05 -23.08 16 5 C 0.49 20.98 7.75 87.27 0.68 21.66 16 6 O -0.55 -24.33 13.32 -3.23 -0.04 -24.37 16 7 N -0.65 -30.04 5.11 -464.42 -2.37 -32.41 16 8 C 0.18 8.40 4.61 86.38 0.40 8.80 16 9 C 0.00 0.14 2.07 -52.92 -0.11 0.03 16 10 C -0.51 -26.29 8.26 25.60 0.21 -26.08 16 11 H 0.05 2.87 7.81 -2.92 -0.02 2.85 16 12 C 0.04 1.93 5.30 84.66 0.45 2.38 16 13 N -0.89 -48.06 10.20 21.45 0.22 -47.84 16 14 Si 0.95 42.64 29.54 68.60 2.03 44.66 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 C -0.19 -8.01 9.96 30.62 0.30 -7.71 16 19 C -0.19 -7.82 9.92 30.62 0.30 -7.52 16 20 C 0.14 3.24 3.02 44.99 0.14 3.38 16 21 C -0.14 -3.42 5.13 30.59 0.16 -3.26 16 22 C -0.10 -2.43 4.94 30.59 0.15 -2.28 16 23 C -0.08 -1.42 2.43 -10.80 -0.03 -1.44 16 24 C 0.08 1.27 6.43 71.98 0.46 1.73 16 25 O -0.59 -10.85 13.19 -148.98 -1.97 -12.82 16 26 C -0.13 -1.84 4.67 30.59 0.14 -1.70 16 27 C -0.11 -1.60 4.90 30.59 0.15 -1.45 16 28 H 0.07 1.61 6.45 -2.39 -0.02 1.59 16 29 H 0.11 1.77 5.27 -2.39 -0.01 1.76 16 30 H 0.07 2.05 6.02 -2.39 -0.01 2.04 16 31 H 0.41 19.53 7.39 -92.71 -0.69 18.84 16 32 H 0.03 1.42 8.08 -2.39 -0.02 1.40 16 33 H 0.09 4.75 5.96 -2.39 -0.01 4.74 16 34 H 0.26 13.69 8.32 -92.70 -0.77 12.91 16 35 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.06 1.81 5.91 -2.39 -0.01 1.80 16 41 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 42 H 0.05 1.42 7.82 -2.39 -0.02 1.40 16 43 H 0.03 0.97 7.40 -2.39 -0.02 0.95 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.04 0.66 8.14 -2.38 -0.02 0.64 16 47 H 0.39 3.69 9.12 -74.06 -0.68 3.01 16 48 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.08 1.27 4.05 -2.39 -0.01 1.26 16 50 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 51 H 0.09 1.02 6.63 -2.39 -0.02 1.01 16 Total: -1.00 -64.27 388.79 0.47 -63.81 By element: Atomic # 1 Polarization: 41.69 SS G_CDS: -0.40 Total: 41.29 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 4.94 Total: 9.21 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -4.05 Total: -98.69 kcal Atomic # 8 Polarization: -58.22 SS G_CDS: -2.06 Total: -60.27 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.27 0.47 -63.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324125018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.540 kcal (2) G-P(sol) polarization free energy of solvation -64.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds