Wall clock time and date at job start Tue Mar 31 2020 22:09:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86798 * 120.00250 * 2 1
4 4 H 1.48500 * 109.46949 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47142 * 299.99760 * 3 2 1
6 6 H 1.48495 * 109.47185 * 60.00048 * 3 2 1
7 7 C 1.38808 * 119.99688 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00314 * 179.97438 * 7 2 1
9 9 N 1.36939 * 120.00318 * 359.97438 * 7 2 1
10 10 C 1.46491 * 120.00597 * 179.97438 * 9 7 2
11 11 C 1.52996 * 109.47621 * 187.21817 * 10 9 7
12 12 H 1.08996 * 110.00284 * 310.70889 * 11 10 9
13 13 C 1.54331 * 109.99457 * 189.66626 * 11 10 9
14 14 C 1.55158 * 103.02480 * 218.66923 * 13 11 10
15 15 C 1.54905 * 101.58190 * 35.30545 * 14 13 11
16 16 N 1.47029 * 109.88021 * 71.80223 * 11 10 9
17 17 C 1.34768 * 125.64824 * 298.40004 * 16 11 10
18 18 O 1.21285 * 119.99937 * 354.75111 * 17 16 11
19 19 C 1.50702 * 120.00293 * 174.75717 * 17 16 11
20 20 N 1.46501 * 109.46899 * 44.02105 * 19 17 16
21 21 C 1.34775 * 120.00222 * 63.00372 * 20 19 17
22 22 N 1.34773 * 120.00223 * 174.96393 * 21 20 19
23 23 O 1.21592 * 119.99863 * 355.24063 * 21 20 19
24 24 C 1.53002 * 109.47409 * 164.02093 * 19 17 16
25 25 C 1.52996 * 109.47057 * 180.02562 * 24 19 17
26 26 C 1.52998 * 109.47366 * 299.99885 * 25 24 19
27 27 C 1.53002 * 109.46939 * 60.00042 * 26 25 24
28 28 C 1.53002 * 109.46850 * 284.02094 * 19 17 16
29 29 H 0.97004 * 119.99266 * 359.97438 * 1 2 3
30 30 H 0.97010 * 119.99513 * 0.02562 * 9 7 2
31 31 H 1.09003 * 109.47154 * 67.22238 * 10 9 7
32 32 H 1.09004 * 109.47293 * 307.22621 * 10 9 7
33 33 H 1.09004 * 110.84775 * 100.20100 * 13 11 10
34 34 H 1.09000 * 110.66839 * 337.05178 * 13 11 10
35 35 H 1.09007 * 111.00289 * 277.23571 * 14 13 11
36 36 H 1.09000 * 111.00539 * 153.38314 * 14 13 11
37 37 H 1.08998 * 110.37474 * 204.15407 * 15 14 13
38 38 H 1.09003 * 110.36321 * 81.82670 * 15 14 13
39 39 H 0.97008 * 119.99885 * 242.99944 * 20 19 17
40 40 H 0.96996 * 120.00534 * 180.27409 * 22 21 20
41 41 H 0.97000 * 119.99842 * 0.28083 * 22 21 20
42 42 H 1.08997 * 109.46843 * 299.99998 * 24 19 17
43 43 H 1.08999 * 109.46672 * 59.99913 * 24 19 17
44 44 H 1.09002 * 109.47131 * 179.97438 * 25 24 19
45 45 H 1.09006 * 109.47472 * 59.99985 * 25 24 19
46 46 H 1.08999 * 109.47238 * 300.00635 * 26 25 24
47 47 H 1.08996 * 109.47548 * 180.02562 * 26 25 24
48 48 H 1.09001 * 109.47225 * 179.97438 * 27 26 25
49 49 H 1.09001 * 109.47408 * 60.00316 * 27 26 25
50 50 H 1.08994 * 109.47318 * 299.99745 * 28 19 17
51 51 H 1.09006 * 109.46694 * 60.00374 * 28 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3964 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0579 -3.6568 -0.0017
11 6 1.0734 -4.8139 -0.1827
12 1 0.2434 -4.7100 0.5161
13 6 1.7910 -6.1594 0.0551
14 6 1.1665 -7.0841 -1.0230
15 6 0.9630 -6.0969 -2.1993
16 7 0.5664 -4.8277 -1.5627
17 6 -0.1391 -3.8411 -2.1502
18 8 -0.4870 -2.8762 -1.5031
19 6 -0.4957 -3.9368 -3.6113
20 7 -0.9640 -5.2921 -3.9119
21 6 -2.0812 -5.7647 -3.3247
22 7 -2.5687 -6.9710 -3.6764
23 8 -2.6522 -5.1007 -2.4811
24 6 -1.6032 -2.9315 -3.9330
25 6 -1.9657 -3.0291 -5.4162
26 6 -0.7313 -2.7168 -6.2645
27 6 0.3762 -3.7222 -5.9429
28 6 0.7390 -3.6241 -4.4591
29 1 -0.4849 0.8401 0.0004
30 1 0.3554 -2.3880 -0.0005
31 1 2.5848 -3.7730 0.9454
32 1 2.7773 -3.6603 -0.8205
33 1 1.5829 -6.5384 1.0558
34 1 2.8647 -6.0556 -0.1009
35 1 0.2133 -7.4904 -0.6847
36 1 1.8545 -7.8834 -1.2982
37 1 0.1731 -6.4526 -2.8609
38 1 1.8935 -5.9692 -2.7526
39 1 -0.4700 -5.8492 -4.5336
40 1 -3.3750 -7.3094 -3.2567
41 1 -2.1132 -7.5007 -4.3493
42 1 -2.4828 -3.1543 -3.3289
43 1 -1.2548 -1.9232 -3.7093
44 1 -2.7551 -2.3132 -5.6452
45 1 -2.3143 -4.0375 -5.6394
46 1 -0.3827 -1.7085 -6.0413
47 1 -0.9896 -2.7859 -7.3211
48 1 1.2555 -3.5000 -6.5475
49 1 0.0277 -4.7305 -6.1661
50 1 1.0874 -2.6158 -4.2355
51 1 1.5280 -4.3405 -4.2300
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001324238696.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:09:32
Heat of formation + Delta-G solvation = -28.694682 kcal
Electronic energy + Delta-G solvation = -33349.972772 eV
Core-core repulsion = 29285.370448 eV
Total energy + Delta-G solvation = -4064.602324 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-41.12311 -39.05078 -38.01002 -36.48587 -34.30152 -33.89548 -33.26931 -31.22603
-31.09902 -30.54315 -29.43568 -28.57037 -24.92325 -23.91041 -22.66734 -22.55155
-21.76848 -21.20432 -20.80674 -19.27243 -18.62367 -18.36111 -17.33258 -16.87709
-16.24815 -16.09879 -15.34686 -15.10023 -14.76469 -14.52008 -14.29739 -14.12734
-13.67601 -13.48636 -13.41365 -13.17171 -12.93960 -12.82701 -12.67908 -12.33244
-12.13084 -12.04420 -11.77980 -11.59016 -11.33612 -11.17660 -11.04599 -11.00950
-10.66903 -10.57516 -10.52567 -10.46190 -10.37832 -10.23330 -9.92166 -9.83200
-9.64672 -9.47162 -9.20045 -8.59350 -8.32821 -7.86247 -6.49543 -5.37462
-2.66128 2.73536 3.22637 3.54472 3.58234 3.59097 3.63296 3.66214
4.41231 4.64987 4.71538 4.75469 4.78336 4.82392 4.93072 5.05017
5.22021 5.29849 5.33732 5.45539 5.47970 5.54480 5.58100 5.64163
5.70516 5.80017 5.81970 5.87434 5.96639 6.00896 6.03847 6.11771
6.14667 6.20709 6.24729 6.28351 6.34481 6.35729 6.54127 6.62564
6.69474 6.75630 6.81558 6.86873 6.95452 7.16503 7.91074 7.95707
8.24107 8.65810 8.75111 9.10778 9.92100 10.60082 11.03206 11.82200
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.010681 B = 0.005329 C = 0.004183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2620.845841 B = 5252.684023 C = 6691.701699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.910 5.910
2 C -0.010 4.010
3 Si 0.893 3.107
4 H -0.284 1.284
5 H -0.295 1.295
6 H -0.295 1.295
7 C -0.238 4.238
8 H 0.059 0.941
9 N -0.724 5.724
10 C 0.146 3.854
11 C 0.130 3.870
12 H 0.069 0.931
13 C -0.123 4.123
14 C -0.132 4.132
15 C 0.092 3.908
16 N -0.610 5.610
17 C 0.521 3.479
18 O -0.449 6.449
19 C 0.196 3.804
20 N -0.731 5.731
21 C 0.701 3.299
22 N -0.871 5.871
23 O -0.567 6.567
24 C -0.119 4.119
25 C -0.111 4.111
26 C -0.122 4.122
27 C -0.112 4.112
28 C -0.120 4.120
29 H 0.248 0.752
30 H 0.403 0.597
31 H 0.014 0.986
32 H 0.016 0.984
33 H 0.076 0.924
34 H 0.075 0.925
35 H 0.070 0.930
36 H 0.076 0.924
37 H 0.078 0.922
38 H 0.056 0.944
39 H 0.394 0.606
40 H 0.413 0.587
41 H 0.392 0.608
42 H 0.090 0.910
43 H 0.087 0.913
44 H 0.061 0.939
45 H 0.055 0.945
46 H 0.067 0.933
47 H 0.058 0.942
48 H 0.066 0.934
49 H 0.058 0.942
50 H 0.092 0.908
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.704 -20.388 -14.888 25.255
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.558 5.558
2 C -0.207 4.207
3 Si 0.725 3.275
4 H -0.210 1.210
5 H -0.222 1.222
6 H -0.222 1.222
7 C -0.370 4.370
8 H 0.077 0.923
9 N -0.378 5.378
10 C 0.017 3.983
11 C 0.027 3.973
12 H 0.087 0.913
13 C -0.162 4.162
14 C -0.170 4.170
15 C -0.032 4.032
16 N -0.348 5.348
17 C 0.305 3.695
18 O -0.316 6.316
19 C 0.107 3.893
20 N -0.391 5.391
21 C 0.399 3.601
22 N -0.440 5.440
23 O -0.442 6.442
24 C -0.157 4.157
25 C -0.149 4.149
26 C -0.160 4.160
27 C -0.150 4.150
28 C -0.158 4.158
29 H 0.058 0.942
30 H 0.248 0.752
31 H 0.031 0.969
32 H 0.034 0.966
33 H 0.095 0.905
34 H 0.094 0.906
35 H 0.089 0.911
36 H 0.094 0.906
37 H 0.096 0.904
38 H 0.074 0.926
39 H 0.229 0.771
40 H 0.245 0.755
41 H 0.220 0.780
42 H 0.109 0.891
43 H 0.105 0.895
44 H 0.080 0.920
45 H 0.074 0.926
46 H 0.085 0.915
47 H 0.077 0.923
48 H 0.085 0.915
49 H 0.076 0.924
50 H 0.111 0.889
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -1.283 -18.873 -13.848 23.444
hybrid contribution 0.544 0.133 -0.474 0.734
sum -0.739 -18.740 -14.322 23.598
Atomic orbital electron populations
1.69796 1.04590 1.24267 1.57099 1.24688 0.95306 0.96916 1.03758
0.86329 0.78719 0.85464 0.76998 1.20957 1.22240 1.22210 1.19171
0.90414 0.84810 1.42610 0.92258 1.43115 1.07628 0.98699 1.88350
1.20978 0.93238 0.86903 0.97163 1.21818 0.96674 0.94981 0.83829
0.91290 1.22602 1.00226 0.94155 0.99212 1.22746 1.01098 0.97245
0.95939 1.22535 0.99705 0.84880 0.96055 1.48278 1.55880 1.17483
1.13148 1.20114 0.78497 0.82266 0.88582 1.90769 1.48829 1.29525
1.62459 1.20349 0.95408 0.81397 0.92170 1.45454 1.27522 1.16568
1.49569 1.15992 0.80936 0.81644 0.81532 1.43032 1.33104 1.20166
1.47724 1.91069 1.60615 1.58011 1.34460 1.21782 0.98987 0.99249
0.95715 1.21470 0.97307 1.01087 0.95026 1.21582 0.95580 0.99756
0.99054 1.21499 0.98825 0.99322 0.95317 1.21809 0.95301 1.04389
0.94329 0.94220 0.75187 0.96901 0.96645 0.90524 0.90610 0.91146
0.90579 0.90422 0.92613 0.77093 0.75520 0.78037 0.89134 0.89496
0.91978 0.92617 0.91472 0.92296 0.91524 0.92360 0.88949 0.91075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -30.21 13.06 55.49 0.72 -29.48 16
2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16
3 Si 0.89 24.03 29.55 -169.99 -5.02 19.00 16
4 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16
5 H -0.29 -7.93 7.11 56.52 0.40 -7.53 16
6 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16
7 C -0.24 -7.31 9.99 -15.06 -0.15 -7.46 16
8 H 0.06 1.77 7.83 -52.49 -0.41 1.36 16
9 N -0.72 -20.64 4.43 -59.91 -0.27 -20.90 16
10 C 0.15 3.31 5.64 -4.05 -0.02 3.28 16
11 C 0.13 2.43 3.07 -66.95 -0.21 2.23 16
12 H 0.07 1.48 8.14 -51.93 -0.42 1.05 16
13 C -0.12 -1.61 6.47 -24.89 -0.16 -1.78 16
14 C -0.13 -1.40 7.09 -24.58 -0.17 -1.57 16
15 C 0.09 1.10 5.93 -2.53 -0.02 1.09 16
16 N -0.61 -10.62 3.06 -163.01 -0.50 -11.12 16
17 C 0.52 10.58 5.17 -10.99 -0.06 10.53 16
18 O -0.45 -11.93 12.27 5.55 0.07 -11.86 16
19 C 0.20 2.98 0.29 -132.97 -0.04 2.94 16
20 N -0.73 -8.03 1.69 -53.50 -0.09 -8.12 16
21 C 0.70 8.97 7.40 -86.92 -0.64 8.33 16
22 N -0.87 -6.54 8.88 27.63 0.25 -6.29 16
23 O -0.57 -10.72 14.39 5.28 0.08 -10.64 16
24 C -0.12 -2.01 3.89 -26.73 -0.10 -2.12 16
25 C -0.11 -1.39 5.76 -26.73 -0.15 -1.55 16
26 C -0.12 -1.31 5.92 -26.73 -0.16 -1.47 16
27 C -0.11 -1.07 5.75 -26.70 -0.15 -1.22 16
28 C -0.12 -1.55 4.72 -26.70 -0.13 -1.68 16
29 H 0.25 7.95 8.31 -40.82 -0.34 7.62 16
30 H 0.40 12.48 4.57 -40.92 -0.19 12.30 16
31 H 0.01 0.30 8.13 -51.93 -0.42 -0.12 16
32 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
33 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16
34 H 0.08 0.93 7.85 -51.93 -0.41 0.53 16
35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16
37 H 0.08 0.79 4.28 -51.93 -0.22 0.57 16
38 H 0.06 0.61 7.63 -51.93 -0.40 0.21 16
39 H 0.39 2.87 6.87 -40.82 -0.28 2.59 16
40 H 0.41 2.89 8.93 -40.82 -0.36 2.53 16
41 H 0.39 1.50 8.85 -40.82 -0.36 1.14 16
42 H 0.09 1.82 6.11 -51.93 -0.32 1.50 16
43 H 0.09 1.74 7.93 -51.93 -0.41 1.33 16
44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16
45 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16
46 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
47 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
48 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
49 H 0.06 0.43 6.92 -51.93 -0.36 0.07 16
50 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16
51 H 0.07 0.83 7.09 -51.93 -0.37 0.46 16
LS Contribution 381.58 15.07 5.75 5.75
Total: -1.00 -40.68 381.58 -9.54 -50.22
By element:
Atomic # 1 Polarization: 22.57 SS G_CDS: -8.27 Total: 14.30 kcal
Atomic # 6 Polarization: 11.41 SS G_CDS: -2.26 Total: 9.15 kcal
Atomic # 7 Polarization: -76.03 SS G_CDS: 0.11 Total: -75.92 kcal
Atomic # 8 Polarization: -22.65 SS G_CDS: 0.14 Total: -22.51 kcal
Atomic # 14 Polarization: 24.03 SS G_CDS: -5.02 Total: 19.00 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -40.68 -9.54 -50.22 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001324238696.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.525 kcal
(2) G-P(sol) polarization free energy of solvation -40.680 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.155 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.220 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.695 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds