Wall clock time and date at job start Tue Mar 31 2020 22:09:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31625 * 1
3 3 Si 1.86798 * 120.00250 * 2 1
4 4 H 1.48500 * 109.46949 * 180.02562 * 3 2 1
5 5 H 1.48498 * 109.47142 * 299.99760 * 3 2 1
6 6 H 1.48495 * 109.47185 * 60.00048 * 3 2 1
7 7 C 1.38808 * 119.99688 * 180.02562 * 2 1 3
8 8 H 1.08002 * 120.00314 * 179.97438 * 7 2 1
9 9 N 1.36939 * 120.00318 * 359.97438 * 7 2 1
10 10 C 1.46491 * 120.00597 * 179.97438 * 9 7 2
11 11 C 1.52996 * 109.47621 * 187.21817 * 10 9 7
12 12 H 1.08996 * 110.00284 * 310.70889 * 11 10 9
13 13 C 1.54331 * 109.99457 * 189.66626 * 11 10 9
14 14 C 1.55158 * 103.02480 * 218.66923 * 13 11 10
15 15 C 1.54905 * 101.58190 * 35.30545 * 14 13 11
16 16 N 1.47029 * 109.88021 * 71.80223 * 11 10 9
17 17 C 1.34768 * 125.64824 * 298.40004 * 16 11 10
18 18 O 1.21285 * 119.99937 * 354.75111 * 17 16 11
19 19 C 1.50702 * 120.00293 * 174.75717 * 17 16 11
20 20 N 1.46501 * 109.46899 * 44.02105 * 19 17 16
21 21 C 1.34775 * 120.00222 * 63.00372 * 20 19 17
22 22 N 1.34773 * 120.00223 * 174.96393 * 21 20 19
23 23 O 1.21592 * 119.99863 * 355.24063 * 21 20 19
24 24 C 1.53002 * 109.47409 * 164.02093 * 19 17 16
25 25 C 1.52996 * 109.47057 * 180.02562 * 24 19 17
26 26 C 1.52998 * 109.47366 * 299.99885 * 25 24 19
27 27 C 1.53002 * 109.46939 * 60.00042 * 26 25 24
28 28 C 1.53002 * 109.46850 * 284.02094 * 19 17 16
29 29 H 0.97004 * 119.99266 * 359.97438 * 1 2 3
30 30 H 0.97010 * 119.99513 * 0.02562 * 9 7 2
31 31 H 1.09003 * 109.47154 * 67.22238 * 10 9 7
32 32 H 1.09004 * 109.47293 * 307.22621 * 10 9 7
33 33 H 1.09004 * 110.84775 * 100.20100 * 13 11 10
34 34 H 1.09000 * 110.66839 * 337.05178 * 13 11 10
35 35 H 1.09007 * 111.00289 * 277.23571 * 14 13 11
36 36 H 1.09000 * 111.00539 * 153.38314 * 14 13 11
37 37 H 1.08998 * 110.37474 * 204.15407 * 15 14 13
38 38 H 1.09003 * 110.36321 * 81.82670 * 15 14 13
39 39 H 0.97008 * 119.99885 * 242.99944 * 20 19 17
40 40 H 0.96996 * 120.00534 * 180.27409 * 22 21 20
41 41 H 0.97000 * 119.99842 * 0.28083 * 22 21 20
42 42 H 1.08997 * 109.46843 * 299.99998 * 24 19 17
43 43 H 1.08999 * 109.46672 * 59.99913 * 24 19 17
44 44 H 1.09002 * 109.47131 * 179.97438 * 25 24 19
45 45 H 1.09006 * 109.47472 * 59.99985 * 25 24 19
46 46 H 1.08999 * 109.47238 * 300.00635 * 26 25 24
47 47 H 1.08996 * 109.47548 * 180.02562 * 26 25 24
48 48 H 1.09001 * 109.47225 * 179.97438 * 27 26 25
49 49 H 1.09001 * 109.47408 * 60.00316 * 27 26 25
50 50 H 1.08994 * 109.47318 * 299.99745 * 28 19 17
51 51 H 1.09006 * 109.46694 * 60.00374 * 28 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3162 0.0000 0.0000
3 14 2.2503 1.6177 0.0000
4 1 3.7103 1.3462 -0.0006
5 1 1.8916 2.3964 -1.2125
6 1 1.8916 2.3964 1.2125
7 6 2.0102 -1.2021 -0.0005
8 1 3.0902 -1.2023 -0.0010
9 7 1.3255 -2.3881 -0.0005
10 6 2.0579 -3.6568 -0.0017
11 6 1.0734 -4.8139 -0.1827
12 1 0.2434 -4.7100 0.5161
13 6 1.7910 -6.1594 0.0551
14 6 1.1665 -7.0841 -1.0230
15 6 0.9630 -6.0969 -2.1993
16 7 0.5664 -4.8277 -1.5627
17 6 -0.1391 -3.8411 -2.1502
18 8 -0.4870 -2.8762 -1.5031
19 6 -0.4957 -3.9368 -3.6113
20 7 -0.9640 -5.2921 -3.9119
21 6 -2.0812 -5.7647 -3.3247
22 7 -2.5687 -6.9710 -3.6764
23 8 -2.6522 -5.1007 -2.4811
24 6 -1.6032 -2.9315 -3.9330
25 6 -1.9657 -3.0291 -5.4162
26 6 -0.7313 -2.7168 -6.2645
27 6 0.3762 -3.7222 -5.9429
28 6 0.7390 -3.6241 -4.4591
29 1 -0.4849 0.8401 0.0004
30 1 0.3554 -2.3880 -0.0005
31 1 2.5848 -3.7730 0.9454
32 1 2.7773 -3.6603 -0.8205
33 1 1.5829 -6.5384 1.0558
34 1 2.8647 -6.0556 -0.1009
35 1 0.2133 -7.4904 -0.6847
36 1 1.8545 -7.8834 -1.2982
37 1 0.1731 -6.4526 -2.8609
38 1 1.8935 -5.9692 -2.7526
39 1 -0.4700 -5.8492 -4.5336
40 1 -3.3750 -7.3094 -3.2567
41 1 -2.1132 -7.5007 -4.3493
42 1 -2.4828 -3.1543 -3.3289
43 1 -1.2548 -1.9232 -3.7093
44 1 -2.7551 -2.3132 -5.6452
45 1 -2.3143 -4.0375 -5.6394
46 1 -0.3827 -1.7085 -6.0413
47 1 -0.9896 -2.7859 -7.3211
48 1 1.2555 -3.5000 -6.5475
49 1 0.0277 -4.7305 -6.1661
50 1 1.0874 -2.6158 -4.2355
51 1 1.5280 -4.3405 -4.2300
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001324238696.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:09:31
Heat of formation + Delta-G solvation = -62.136675 kcal
Electronic energy + Delta-G solvation = -33351.422926 eV
Core-core repulsion = 29285.370448 eV
Total energy + Delta-G solvation = -4066.052477 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.17 seconds
Orbital eigenvalues (eV)
-42.33448 -40.33486 -39.14241 -37.93594 -36.20396 -35.15529 -34.27964 -33.19108
-32.38199 -31.67857 -30.51588 -30.26979 -26.67637 -25.34335 -24.25620 -23.72330
-23.05427 -22.38111 -21.92316 -20.40109 -20.01852 -19.36235 -19.15747 -18.15185
-17.48951 -17.44187 -16.77855 -16.42264 -16.24702 -15.96993 -15.48849 -15.27798
-15.16519 -14.84635 -14.79153 -14.64451 -14.41521 -14.11186 -14.03821 -13.62081
-13.32080 -13.26556 -13.11198 -13.08803 -13.01649 -12.91400 -12.67638 -12.22520
-12.15263 -12.12160 -11.98081 -11.65912 -11.59241 -11.50859 -11.48693 -11.26502
-11.10583 -10.91317 -10.60917 -10.57245 -9.67711 -9.36302 -8.79335 -7.77911
-5.08043 1.39411 1.43355 1.52829 1.64535 2.07539 2.20390 2.31631
2.58541 3.47377 3.52583 3.62003 3.65698 3.70675 3.74064 3.81711
4.02565 4.16753 4.21525 4.22783 4.30791 4.40915 4.45967 4.47565
4.50281 4.64948 4.70964 4.78323 4.80882 4.84127 4.92750 4.97920
5.01205 5.11253 5.13751 5.17469 5.18311 5.21820 5.27143 5.36653
5.38844 5.41469 5.48092 5.52954 5.69555 5.95835 6.06825 6.36912
6.84057 7.16301 7.40826 7.63303 7.74214 8.37632 8.65858 9.43019
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.010681 B = 0.005329 C = 0.004183
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2620.845841 B = 5252.684023 C = 6691.701699
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.953 5.953
2 C -0.078 4.078
3 Si 0.969 3.031
4 H -0.264 1.264
5 H -0.296 1.296
6 H -0.294 1.294
7 C -0.245 4.245
8 H 0.066 0.934
9 N -0.741 5.741
10 C 0.145 3.855
11 C 0.128 3.872
12 H 0.025 0.975
13 C -0.113 4.113
14 C -0.118 4.118
15 C 0.081 3.919
16 N -0.611 5.611
17 C 0.505 3.495
18 O -0.529 6.529
19 C 0.211 3.789
20 N -0.708 5.708
21 C 0.697 3.303
22 N -0.841 5.841
23 O -0.632 6.632
24 C -0.114 4.114
25 C -0.101 4.101
26 C -0.122 4.122
27 C -0.102 4.102
28 C -0.115 4.115
29 H 0.240 0.760
30 H 0.390 0.610
31 H 0.018 0.982
32 H 0.018 0.982
33 H 0.088 0.912
34 H 0.092 0.908
35 H 0.067 0.933
36 H 0.122 0.878
37 H 0.099 0.901
38 H 0.081 0.919
39 H 0.419 0.581
40 H 0.419 0.581
41 H 0.417 0.583
42 H 0.049 0.951
43 H 0.034 0.966
44 H 0.056 0.944
45 H 0.078 0.922
46 H 0.042 0.958
47 H 0.092 0.908
48 H 0.089 0.911
49 H 0.096 0.904
50 H 0.048 0.952
51 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.676 -24.513 -18.148 30.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.603 5.603
2 C -0.271 4.271
3 Si 0.798 3.202
4 H -0.188 1.188
5 H -0.223 1.223
6 H -0.221 1.221
7 C -0.377 4.377
8 H 0.084 0.916
9 N -0.394 5.394
10 C 0.017 3.983
11 C 0.024 3.976
12 H 0.043 0.957
13 C -0.152 4.152
14 C -0.155 4.155
15 C -0.040 4.040
16 N -0.346 5.346
17 C 0.292 3.708
18 O -0.402 6.402
19 C 0.120 3.880
20 N -0.371 5.371
21 C 0.396 3.604
22 N -0.411 5.411
23 O -0.512 6.512
24 C -0.153 4.153
25 C -0.139 4.139
26 C -0.159 4.159
27 C -0.139 4.139
28 C -0.153 4.153
29 H 0.049 0.951
30 H 0.232 0.768
31 H 0.035 0.965
32 H 0.036 0.964
33 H 0.106 0.894
34 H 0.110 0.890
35 H 0.086 0.914
36 H 0.140 0.860
37 H 0.117 0.883
38 H 0.099 0.901
39 H 0.260 0.740
40 H 0.252 0.748
41 H 0.248 0.752
42 H 0.068 0.932
43 H 0.053 0.947
44 H 0.075 0.925
45 H 0.097 0.903
46 H 0.061 0.939
47 H 0.110 0.890
48 H 0.108 0.892
49 H 0.114 0.886
50 H 0.067 0.933
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 1.181 -23.166 -17.185 28.868
hybrid contribution -0.220 1.324 0.606 1.473
sum 0.960 -21.841 -16.578 27.437
Atomic orbital electron populations
1.70056 1.06651 1.24588 1.59014 1.25612 0.96220 1.00911 1.04355
0.85135 0.78245 0.80257 0.76535 1.18782 1.22323 1.22133 1.19616
0.90808 0.86097 1.41196 0.91609 1.43409 1.07453 1.00263 1.88262
1.21177 0.93901 0.86218 0.97039 1.21774 0.94833 0.96791 0.84219
0.95653 1.22590 1.00507 0.90983 1.01095 1.22775 1.01864 0.97205
0.93687 1.22981 1.01468 0.82482 0.97114 1.48420 1.54524 1.18811
1.12866 1.21176 0.77529 0.81625 0.90486 1.90722 1.52031 1.32837
1.64569 1.19918 0.95735 0.82943 0.89391 1.44987 1.27292 1.15085
1.49698 1.16232 0.80842 0.82494 0.80880 1.42700 1.32832 1.18166
1.47395 1.91069 1.62447 1.60213 1.37483 1.21618 0.97966 0.97155
0.98531 1.21423 0.98414 1.02297 0.91729 1.21603 0.94925 0.99067
1.00319 1.21527 0.99238 1.00884 0.92287 1.21789 0.94413 1.02456
0.96636 0.95067 0.76790 0.96475 0.96360 0.89375 0.88986 0.91413
0.86021 0.88333 0.90086 0.74025 0.74779 0.75163 0.93199 0.94696
0.92523 0.90301 0.93911 0.88993 0.89246 0.88567 0.93275 0.88857
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.95 -67.80 13.06 21.65 0.28 -67.52 16
2 C -0.08 -5.15 5.50 84.86 0.47 -4.68 16
3 Si 0.97 51.70 29.55 68.60 2.03 53.73 16
4 H -0.26 -13.01 7.11 99.48 0.71 -12.30 16
5 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16
6 H -0.29 -15.54 7.11 99.48 0.71 -14.83 16
7 C -0.24 -15.72 9.99 84.03 0.84 -14.88 16
8 H 0.07 4.02 7.83 -2.91 -0.02 4.00 16
9 N -0.74 -45.05 4.43 -343.47 -1.52 -46.57 16
10 C 0.14 6.77 5.64 86.38 0.49 7.26 16
11 C 0.13 4.93 3.07 45.34 0.14 5.07 16
12 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16
13 C -0.11 -2.70 6.47 31.79 0.21 -2.49 16
14 C -0.12 -1.97 7.09 31.99 0.23 -1.74 16
15 C 0.08 1.66 5.93 86.85 0.52 2.18 16
16 N -0.61 -21.51 3.06 -788.04 -2.41 -23.93 16
17 C 0.51 21.87 5.17 87.66 0.45 22.33 16
18 O -0.53 -31.17 12.27 -3.04 -0.04 -31.21 16
19 C 0.21 6.57 0.29 2.86 0.00 6.57 16
20 N -0.71 -13.99 1.69 -441.43 -0.75 -14.74 16
21 C 0.70 16.96 7.40 179.06 1.32 18.28 16
22 N -0.84 -9.84 8.88 -184.75 -1.64 -11.48 16
23 O -0.63 -25.07 14.39 -4.01 -0.06 -25.12 16
24 C -0.11 -4.23 3.89 30.59 0.12 -4.11 16
25 C -0.10 -2.52 5.76 30.59 0.18 -2.35 16
26 C -0.12 -2.39 5.92 30.59 0.18 -2.21 16
27 C -0.10 -1.56 5.75 30.61 0.18 -1.39 16
28 C -0.11 -2.86 4.72 30.61 0.14 -2.71 16
29 H 0.24 16.57 8.31 -92.71 -0.77 15.80 16
30 H 0.39 26.26 4.57 -94.28 -0.43 25.83 16
31 H 0.02 0.80 8.13 -2.39 -0.02 0.78 16
32 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16
33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16
34 H 0.09 1.94 7.85 -2.39 -0.02 1.92 16
35 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16
36 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16
37 H 0.10 1.56 4.28 -2.39 -0.01 1.55 16
38 H 0.08 1.33 7.63 -2.39 -0.02 1.31 16
39 H 0.42 3.94 6.87 -92.70 -0.64 3.30 16
40 H 0.42 4.74 8.93 -92.71 -0.83 3.91 16
41 H 0.42 1.03 8.85 -92.71 -0.82 0.21 16
42 H 0.05 2.24 6.11 -2.39 -0.01 2.23 16
43 H 0.03 1.61 7.93 -2.39 -0.02 1.59 16
44 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16
45 H 0.08 1.61 7.60 -2.38 -0.02 1.59 16
46 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16
47 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16
48 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16
49 H 0.10 0.81 6.92 -2.39 -0.02 0.79 16
50 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
51 H 0.09 1.88 7.09 -2.38 -0.02 1.86 16
Total: -1.00 -104.20 381.58 -0.39 -104.58
By element:
Atomic # 1 Polarization: 38.87 SS G_CDS: -1.73 Total: 37.14 kcal
Atomic # 6 Polarization: 19.66 SS G_CDS: 5.46 Total: 25.12 kcal
Atomic # 7 Polarization: -158.19 SS G_CDS: -6.04 Total: -164.23 kcal
Atomic # 8 Polarization: -56.24 SS G_CDS: -0.10 Total: -56.33 kcal
Atomic # 14 Polarization: 51.70 SS G_CDS: 2.03 Total: 53.73 kcal
Total: -104.20 -0.39 -104.58 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001324238696.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 42.448 kcal
(2) G-P(sol) polarization free energy of solvation -104.198 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.750 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.585 kcal
(6) G-S(sol) free energy of system = (1) + (5) -62.137 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.17 seconds