Wall clock time and date at job start Tue Mar 31 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48493 * 109.47346 * 270.00737 * 3 2 1 5 5 H 1.48510 * 109.46666 * 30.00647 * 3 2 1 6 6 H 1.48499 * 109.46802 * 150.00117 * 3 2 1 7 7 C 1.38810 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00013 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00072 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00138 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47250 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46596 * 294.99785 * 11 10 9 13 13 N 1.46492 * 109.47243 * 54.99355 * 11 10 9 14 14 C 1.34775 * 120.00199 * 244.56025 * 13 11 10 15 15 O 1.21275 * 120.00270 * 355.12352 * 14 13 11 16 16 C 1.50708 * 119.99697 * 175.12516 * 14 13 11 17 17 N 1.46501 * 109.46797 * 180.02562 * 16 14 13 18 18 C 1.46379 * 119.32993 * 89.99525 * 17 16 14 19 19 C 1.53245 * 109.15291 * 150.91864 * 18 17 16 20 20 C 1.53239 * 108.56410 * 55.48197 * 19 18 17 21 21 N 1.46389 * 109.15156 * 304.52024 * 20 19 18 22 22 C 1.34136 * 121.33863 * 29.31641 * 21 20 19 23 23 O 1.21587 * 118.69411 * 179.14777 * 22 21 20 24 24 C 1.53000 * 109.46934 * 174.99756 * 11 10 9 25 25 C 1.54264 * 110.03456 * 297.03565 * 24 11 10 26 26 C 1.54958 * 104.15833 * 217.13801 * 25 24 11 27 27 C 1.54886 * 102.77897 * 37.88988 * 26 25 24 28 28 C 1.53877 * 110.03066 * 179.81487 * 24 11 10 29 29 H 0.97005 * 119.99325 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00202 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47395 * 59.99347 * 10 9 7 32 32 H 1.09000 * 109.46755 * 299.99611 * 10 9 7 33 33 H 0.97003 * 119.99804 * 64.56715 * 13 11 10 34 34 H 1.08988 * 109.47305 * 60.00085 * 16 14 13 35 35 H 1.08995 * 109.46705 * 299.99387 * 16 14 13 36 36 H 1.09001 * 109.52550 * 31.01582 * 18 17 16 37 37 H 1.09003 * 109.58172 * 270.85088 * 18 17 16 38 38 H 1.09001 * 109.62069 * 295.76128 * 19 18 17 39 39 H 1.08998 * 109.77458 * 175.29285 * 19 18 17 40 40 H 1.09000 * 109.53103 * 184.62059 * 20 19 18 41 41 H 1.08997 * 109.58123 * 64.45139 * 20 19 18 42 42 H 0.96998 * 119.32952 * 209.03218 * 21 20 19 43 43 H 1.09007 * 110.01824 * 58.43189 * 24 11 10 44 44 H 1.08995 * 110.48345 * 335.78811 * 25 24 11 45 45 H 1.09001 * 110.48559 * 98.42390 * 25 24 11 46 46 H 1.08994 * 110.72111 * 279.57090 * 26 25 24 47 47 H 1.09007 * 110.92317 * 156.29649 * 26 25 24 48 48 H 1.09009 * 110.48763 * 203.40474 * 27 26 25 49 49 H 1.08995 * 110.60254 * 80.81963 * 27 26 25 50 50 H 1.08996 * 110.03550 * 238.57054 * 28 24 11 51 51 H 1.09002 * 110.03355 * 359.95608 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 1 5.8941 -1.6980 -0.9325 13 7 5.9517 -1.3232 1.1302 14 6 6.4305 -0.0829 0.9091 15 8 6.6672 0.2829 -0.2227 16 6 6.6717 0.8494 2.0683 17 7 7.1882 2.1261 1.5689 18 6 6.2482 3.1919 1.2179 19 6 6.9252 4.5499 1.4318 20 6 8.2246 4.5806 0.6202 21 7 9.0574 3.4393 1.0037 22 6 8.5128 2.2930 1.4380 23 8 9.2492 1.3703 1.7289 24 6 6.3803 -3.5111 0.1247 25 6 6.0529 -4.1847 1.4733 26 6 7.3951 -4.8209 1.9149 27 6 8.4375 -3.7658 1.4687 28 6 7.8959 -3.2451 0.1214 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8483 -3.0428 -0.8907 32 1 3.8491 -3.0422 0.8892 33 1 5.8292 -1.6410 2.0385 34 1 7.3982 0.4039 2.7477 35 1 5.7348 1.0195 2.5987 36 1 5.3644 3.1215 1.8519 37 1 5.9557 3.0914 0.1727 38 1 7.1512 4.6836 2.4898 39 1 6.2643 5.3486 1.0949 40 1 8.7604 5.5075 0.8250 41 1 7.9927 4.5212 -0.4431 42 1 10.0224 3.5122 0.9385 43 1 6.1160 -4.1751 -0.6983 44 1 5.7250 -3.4424 2.2009 45 1 5.2909 -4.9529 1.3410 46 1 7.5602 -5.7682 1.4017 47 1 7.4235 -4.9589 2.9958 48 1 9.4151 -4.2287 1.3336 49 1 8.4975 -2.9550 2.1948 50 1 8.3672 -3.7807 -0.7026 51 1 8.0872 -2.1759 0.0294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324482492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:17 Heat of formation + Delta-G solvation = -53.194328 kcal Electronic energy + Delta-G solvation = -31821.074974 eV Core-core repulsion = 27755.410266 eV Total energy + Delta-G solvation = -4065.664708 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.85638 -39.79318 -37.96757 -36.48937 -35.40412 -34.80332 -33.50687 -31.54294 -31.12378 -30.14330 -28.66637 -28.02845 -26.44624 -25.56493 -23.38031 -22.87761 -21.46545 -21.05255 -20.11803 -19.26957 -19.00305 -17.69754 -17.61243 -17.30908 -17.22738 -15.93296 -15.79604 -15.60974 -15.06409 -14.74366 -14.50392 -14.35509 -14.20949 -13.99896 -13.87967 -13.73298 -13.33188 -13.17374 -13.08816 -12.73577 -12.35931 -12.18572 -11.88437 -11.79607 -11.58764 -11.51717 -11.44172 -11.02810 -10.98326 -10.90430 -10.60940 -10.54967 -10.45064 -10.39016 -10.18555 -10.08233 -9.82756 -9.61153 -9.22868 -8.91615 -8.65306 -8.59943 -7.22047 -5.77841 -3.11988 2.51571 2.94197 3.13123 3.30452 3.39174 3.41599 3.49541 3.74441 4.43629 4.56271 4.57941 4.62355 4.70255 4.77962 4.82058 4.96417 5.02432 5.17173 5.23956 5.32238 5.35691 5.41223 5.46549 5.50802 5.52207 5.52648 5.61876 5.67400 5.71156 5.85418 5.86136 5.89228 5.93708 5.98483 6.10594 6.13216 6.19705 6.31447 6.37735 6.43525 6.46234 6.51419 6.65707 6.93273 6.95887 7.72738 7.78718 7.99380 8.41231 8.50465 8.56796 9.21531 9.94228 10.15332 11.40665 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.006033 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.969387 B = 4640.410959 C = 8049.144960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.240 4.240 8 H 0.090 0.910 9 N -0.752 5.752 10 C 0.147 3.853 11 C 0.135 3.865 12 H 0.098 0.902 13 N -0.710 5.710 14 C 0.502 3.498 15 O -0.535 6.535 16 C 0.110 3.890 17 N -0.601 5.601 18 C 0.108 3.892 19 C -0.151 4.151 20 C 0.110 3.890 21 N -0.738 5.738 22 C 0.718 3.282 23 O -0.599 6.599 24 C -0.097 4.097 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.121 4.121 28 C -0.118 4.118 29 H 0.258 0.742 30 H 0.362 0.638 31 H 0.035 0.965 32 H 0.032 0.968 33 H 0.398 0.602 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.413 0.587 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.058 0.942 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.190 3.136 6.096 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.192 4.192 3 Si 0.715 3.285 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.370 4.370 8 H 0.108 0.892 9 N -0.398 5.398 10 C 0.019 3.981 11 C 0.030 3.970 12 H 0.116 0.884 13 N -0.362 5.362 14 C 0.286 3.714 15 O -0.411 6.411 16 C -0.017 4.017 17 N -0.337 5.337 18 C -0.015 4.015 19 C -0.189 4.189 20 C -0.015 4.015 21 N -0.395 5.395 22 C 0.419 3.581 23 O -0.478 6.478 24 C -0.117 4.117 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.158 4.158 28 C -0.155 4.155 29 H 0.068 0.932 30 H 0.195 0.805 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.233 0.767 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.250 0.750 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.077 0.923 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 18.286 2.856 5.430 19.287 hybrid contribution 0.567 1.226 0.204 1.366 sum 18.853 4.082 5.634 20.096 Atomic orbital electron populations 1.69707 1.05027 1.25678 1.57899 1.24651 0.95196 0.97092 1.02304 0.86535 0.78801 0.85202 0.77932 1.21204 1.21847 1.20527 1.19071 0.80677 0.94683 1.42519 0.89231 1.42641 1.03867 1.02251 1.91000 1.21029 0.88264 0.89654 0.99191 1.21376 0.95003 0.89862 0.90778 0.88368 1.45832 1.65890 1.14453 1.10060 1.21044 0.76465 0.82625 0.91236 1.90672 1.51016 1.75596 1.23821 1.21231 1.01684 0.83740 0.95068 1.46245 1.04231 1.14141 1.69047 1.21690 0.92261 0.85480 1.02116 1.22200 0.97296 0.97791 1.01622 1.21521 0.91838 0.89050 0.99067 1.44857 1.10159 1.12933 1.71599 1.15300 0.82062 0.82682 0.78009 1.90928 1.59016 1.40108 1.57784 1.22073 0.95012 0.96038 0.98567 1.22425 0.97108 0.99500 0.96482 1.22507 0.95132 0.98206 1.00315 1.22311 0.98023 0.98246 0.97252 1.22140 0.94562 1.01690 0.97146 0.93151 0.80494 0.94708 0.95018 0.76726 0.86865 0.87347 0.89712 0.91044 0.90383 0.88369 0.89956 0.91617 0.75010 0.89949 0.91540 0.91290 0.91792 0.91900 0.92314 0.91822 0.92347 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.29 13.97 55.49 0.78 -28.51 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 22.14 27.73 -169.99 -4.71 17.42 16 4 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 7 C -0.24 -6.77 10.47 -15.06 -0.16 -6.93 16 8 H 0.09 2.70 8.06 -52.48 -0.42 2.27 16 9 N -0.75 -17.92 5.24 -59.91 -0.31 -18.24 16 10 C 0.15 2.78 5.84 -4.04 -0.02 2.76 16 11 C 0.13 2.16 2.04 -67.93 -0.14 2.02 16 12 H 0.10 1.84 6.91 -51.93 -0.36 1.48 16 13 N -0.71 -10.69 3.75 -53.81 -0.20 -10.89 16 14 C 0.50 8.54 7.00 -10.98 -0.08 8.46 16 15 O -0.53 -11.12 15.77 5.56 0.09 -11.03 16 16 C 0.11 1.56 5.83 -5.19 -0.03 1.53 16 17 N -0.60 -8.66 2.30 -181.15 -0.42 -9.07 16 18 C 0.11 1.34 6.55 -3.98 -0.03 1.31 16 19 C -0.15 -1.28 6.20 -26.48 -0.16 -1.44 16 20 C 0.11 0.91 7.21 -3.98 -0.03 0.88 16 21 N -0.74 -8.33 5.58 -65.52 -0.37 -8.69 16 22 C 0.72 10.95 8.18 -88.06 -0.72 10.23 16 23 O -0.60 -11.06 16.50 5.29 0.09 -10.97 16 24 C -0.10 -1.24 2.81 -89.50 -0.25 -1.49 16 25 C -0.12 -1.32 5.13 -25.04 -0.13 -1.44 16 26 C -0.12 -1.23 6.91 -24.70 -0.17 -1.41 16 27 C -0.12 -1.33 6.83 -25.07 -0.17 -1.51 16 28 C -0.12 -1.50 6.19 -25.61 -0.16 -1.65 16 29 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 30 H 0.36 8.74 4.68 -40.82 -0.19 8.55 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.03 0.58 7.13 -51.93 -0.37 0.21 16 33 H 0.40 5.05 6.96 -40.82 -0.28 4.77 16 34 H 0.11 1.47 7.32 -51.94 -0.38 1.09 16 35 H 0.11 1.32 7.86 -51.93 -0.41 0.91 16 36 H 0.08 1.00 7.86 -51.93 -0.41 0.59 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.41 3.98 8.88 -40.82 -0.36 3.62 16 43 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.07 0.75 5.96 -51.93 -0.31 0.44 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 49 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 51 H 0.07 1.05 7.11 -51.93 -0.37 0.68 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -37.14 397.18 -9.95 -47.09 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: -8.53 Total: 15.60 kcal Atomic # 6 Polarization: 13.66 SS G_CDS: -2.34 Total: 11.32 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: -0.52 Total: -75.41 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: 0.17 Total: -22.00 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.14 -9.95 -47.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324482492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.108 kcal (2) G-P(sol) polarization free energy of solvation -37.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds