Wall clock time and date at job start Tue Mar 31 2020 22:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86802 * 120.00162 * 2 1 4 4 H 1.48493 * 109.47346 * 270.00737 * 3 2 1 5 5 H 1.48510 * 109.46666 * 30.00647 * 3 2 1 6 6 H 1.48499 * 109.46802 * 150.00117 * 3 2 1 7 7 C 1.38810 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00013 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00072 * 179.97438 * 7 2 1 10 10 C 1.46504 * 120.00138 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47250 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.46596 * 294.99785 * 11 10 9 13 13 N 1.46492 * 109.47243 * 54.99355 * 11 10 9 14 14 C 1.34775 * 120.00199 * 244.56025 * 13 11 10 15 15 O 1.21275 * 120.00270 * 355.12352 * 14 13 11 16 16 C 1.50708 * 119.99697 * 175.12516 * 14 13 11 17 17 N 1.46501 * 109.46797 * 180.02562 * 16 14 13 18 18 C 1.46379 * 119.32993 * 89.99525 * 17 16 14 19 19 C 1.53245 * 109.15291 * 150.91864 * 18 17 16 20 20 C 1.53239 * 108.56410 * 55.48197 * 19 18 17 21 21 N 1.46389 * 109.15156 * 304.52024 * 20 19 18 22 22 C 1.34136 * 121.33863 * 29.31641 * 21 20 19 23 23 O 1.21587 * 118.69411 * 179.14777 * 22 21 20 24 24 C 1.53000 * 109.46934 * 174.99756 * 11 10 9 25 25 C 1.54264 * 110.03456 * 297.03565 * 24 11 10 26 26 C 1.54958 * 104.15833 * 217.13801 * 25 24 11 27 27 C 1.54886 * 102.77897 * 37.88988 * 26 25 24 28 28 C 1.53877 * 110.03066 * 179.81487 * 24 11 10 29 29 H 0.97005 * 119.99325 * 359.97438 * 1 2 3 30 30 H 0.97006 * 120.00202 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.47395 * 59.99347 * 10 9 7 32 32 H 1.09000 * 109.46755 * 299.99611 * 10 9 7 33 33 H 0.97003 * 119.99804 * 64.56715 * 13 11 10 34 34 H 1.08988 * 109.47305 * 60.00085 * 16 14 13 35 35 H 1.08995 * 109.46705 * 299.99387 * 16 14 13 36 36 H 1.09001 * 109.52550 * 31.01582 * 18 17 16 37 37 H 1.09003 * 109.58172 * 270.85088 * 18 17 16 38 38 H 1.09001 * 109.62069 * 295.76128 * 19 18 17 39 39 H 1.08998 * 109.77458 * 175.29285 * 19 18 17 40 40 H 1.09000 * 109.53103 * 184.62059 * 20 19 18 41 41 H 1.08997 * 109.58123 * 64.45139 * 20 19 18 42 42 H 0.96998 * 119.32952 * 209.03218 * 21 20 19 43 43 H 1.09007 * 110.01824 * 58.43189 * 24 11 10 44 44 H 1.08995 * 110.48345 * 335.78811 * 25 24 11 45 45 H 1.09001 * 110.48559 * 98.42390 * 25 24 11 46 46 H 1.08994 * 110.72111 * 279.57090 * 26 25 24 47 47 H 1.09007 * 110.92317 * 156.29649 * 26 25 24 48 48 H 1.09009 * 110.48763 * 203.40474 * 27 26 25 49 49 H 1.08995 * 110.60254 * 80.81963 * 27 26 25 50 50 H 1.08996 * 110.03550 * 238.57054 * 28 24 11 51 51 H 1.09002 * 110.03355 * 359.95608 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4477 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 6 5.6163 -2.1914 -0.0011 12 1 5.8941 -1.6980 -0.9325 13 7 5.9517 -1.3232 1.1302 14 6 6.4305 -0.0829 0.9091 15 8 6.6672 0.2829 -0.2227 16 6 6.6717 0.8494 2.0683 17 7 7.1882 2.1261 1.5689 18 6 6.2482 3.1919 1.2179 19 6 6.9252 4.5499 1.4318 20 6 8.2246 4.5806 0.6202 21 7 9.0574 3.4393 1.0037 22 6 8.5128 2.2930 1.4380 23 8 9.2492 1.3703 1.7289 24 6 6.3803 -3.5111 0.1247 25 6 6.0529 -4.1847 1.4733 26 6 7.3951 -4.8209 1.9149 27 6 8.4375 -3.7658 1.4687 28 6 7.8959 -3.2451 0.1214 29 1 -0.4849 0.8401 0.0004 30 1 3.8646 -0.3621 -0.0014 31 1 3.8483 -3.0428 -0.8907 32 1 3.8491 -3.0422 0.8892 33 1 5.8292 -1.6410 2.0385 34 1 7.3982 0.4039 2.7477 35 1 5.7348 1.0195 2.5987 36 1 5.3644 3.1215 1.8519 37 1 5.9557 3.0914 0.1727 38 1 7.1512 4.6836 2.4898 39 1 6.2643 5.3486 1.0949 40 1 8.7604 5.5075 0.8250 41 1 7.9927 4.5212 -0.4431 42 1 10.0224 3.5122 0.9385 43 1 6.1160 -4.1751 -0.6983 44 1 5.7250 -3.4424 2.2009 45 1 5.2909 -4.9529 1.3410 46 1 7.5602 -5.7682 1.4017 47 1 7.4235 -4.9589 2.9958 48 1 9.4151 -4.2287 1.3336 49 1 8.4975 -2.9550 2.1948 50 1 8.3672 -3.7807 -0.7026 51 1 8.0872 -2.1759 0.0294 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324482492.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:16 Heat of formation + Delta-G solvation = -80.294253 kcal Electronic energy + Delta-G solvation = -31822.250115 eV Core-core repulsion = 27755.410266 eV Total energy + Delta-G solvation = -4066.839849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.95347 -41.00162 -39.13447 -37.52351 -36.94463 -35.88696 -35.14402 -33.38484 -32.16525 -31.52435 -29.62670 -29.05769 -27.95181 -26.51627 -24.87101 -24.05674 -22.96569 -22.22436 -21.16412 -20.47743 -20.03731 -19.61522 -18.66065 -18.43794 -18.30661 -17.17144 -16.88052 -16.72590 -16.54978 -16.07110 -15.79456 -15.65597 -15.43459 -15.32265 -14.94992 -14.82634 -14.67863 -14.43098 -14.22636 -14.18564 -13.77178 -13.40838 -13.33763 -13.16628 -12.88781 -12.80152 -12.40507 -12.28210 -12.12434 -11.97587 -11.89217 -11.85775 -11.77083 -11.57308 -11.47357 -11.41229 -11.27191 -11.18340 -10.99014 -10.20369 -9.99824 -9.68357 -9.30268 -8.04137 -5.36410 1.28007 1.37408 1.42340 1.49052 1.63328 2.02301 2.34791 2.45145 2.81992 3.27362 3.41614 3.68150 3.69501 3.75880 3.80450 3.89932 3.96062 3.98053 4.18678 4.22808 4.28546 4.35902 4.40239 4.49180 4.59117 4.59359 4.67867 4.69311 4.75572 4.76736 4.84628 4.86652 4.89788 5.04684 5.11339 5.11677 5.14570 5.20246 5.29303 5.36741 5.44765 5.52545 5.53456 5.61365 5.74607 6.06065 6.19586 6.54903 6.70927 7.05516 7.25746 7.47321 7.82441 8.01306 9.17215 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007263 B = 0.006033 C = 0.003478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3853.969387 B = 4640.410959 C = 8049.144960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.061 4.061 3 Si 0.951 3.049 4 H -0.296 1.296 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.229 4.229 8 H 0.061 0.939 9 N -0.754 5.754 10 C 0.145 3.855 11 C 0.147 3.853 12 H 0.069 0.931 13 N -0.700 5.700 14 C 0.495 3.505 15 O -0.579 6.579 16 C 0.109 3.891 17 N -0.604 5.604 18 C 0.097 3.903 19 C -0.142 4.142 20 C 0.105 3.895 21 N -0.730 5.730 22 C 0.707 3.293 23 O -0.641 6.641 24 C -0.091 4.091 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.118 4.118 28 C -0.114 4.114 29 H 0.258 0.742 30 H 0.362 0.638 31 H 0.031 0.969 32 H 0.047 0.953 33 H 0.411 0.589 34 H 0.123 0.877 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.088 0.912 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.061 0.939 42 H 0.419 0.581 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.057 0.943 50 H 0.065 0.935 51 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.828 3.947 7.563 21.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.253 4.253 3 Si 0.779 3.221 4 H -0.223 1.223 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.360 4.360 8 H 0.079 0.921 9 N -0.400 5.400 10 C 0.018 3.982 11 C 0.041 3.959 12 H 0.087 0.913 13 N -0.353 5.353 14 C 0.281 3.719 15 O -0.458 6.458 16 C -0.018 4.018 17 N -0.339 5.339 18 C -0.026 4.026 19 C -0.180 4.180 20 C -0.018 4.018 21 N -0.387 5.387 22 C 0.408 3.592 23 O -0.524 6.524 24 C -0.111 4.111 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.155 4.155 28 C -0.151 4.151 29 H 0.067 0.933 30 H 0.194 0.806 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.249 0.751 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.111 0.889 37 H 0.064 0.936 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.080 0.920 42 H 0.257 0.743 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.093 0.907 47 H 0.096 0.904 48 H 0.087 0.913 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 19.952 3.661 6.925 21.434 hybrid contribution 0.043 0.881 -0.335 0.944 sum 19.995 4.543 6.590 21.537 Atomic orbital electron populations 1.69873 1.06865 1.26540 1.59873 1.25415 0.96043 1.00866 1.02949 0.85475 0.78590 0.80565 0.77479 1.22333 1.21045 1.17801 1.19060 0.82513 0.93594 1.40848 0.92061 1.42660 1.02455 1.03996 1.90865 1.21210 0.89723 0.87747 0.99488 1.21136 0.93249 0.91423 0.90068 0.91310 1.45772 1.65016 1.13999 1.10516 1.21660 0.75673 0.83119 0.91466 1.90648 1.52959 1.76486 1.25707 1.21357 1.03032 0.83472 0.93980 1.46375 1.04343 1.14499 1.68713 1.21891 0.92836 0.87121 1.00714 1.22224 0.97389 0.96013 1.02380 1.21797 0.91975 0.89261 0.98805 1.44900 1.10949 1.12634 1.70244 1.15618 0.82181 0.83249 0.78124 1.90885 1.59975 1.41814 1.59700 1.22038 0.94593 0.94269 1.00157 1.22441 0.98229 0.99605 0.95189 1.22464 0.93398 0.97958 1.01348 1.22291 0.98910 0.98465 0.95866 1.22074 0.94573 0.99788 0.98712 0.93345 0.80559 0.95058 0.93507 0.75144 0.85878 0.85094 0.88935 0.93558 0.89371 0.85684 0.86069 0.92045 0.74268 0.89232 0.91543 0.90642 0.90749 0.90416 0.91314 0.92460 0.91641 0.94536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.56 13.97 21.65 0.30 -62.25 16 2 C -0.06 -3.61 5.50 84.86 0.47 -3.15 16 3 Si 0.95 45.97 27.73 68.60 1.90 47.88 16 4 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 5 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 7 C -0.23 -13.09 10.47 84.03 0.88 -12.21 16 8 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 9 N -0.75 -35.81 5.24 -343.45 -1.80 -37.61 16 10 C 0.15 5.45 5.84 86.38 0.50 5.96 16 11 C 0.15 4.67 2.04 44.99 0.09 4.76 16 12 H 0.07 2.64 6.91 -2.38 -0.02 2.63 16 13 N -0.70 -20.66 3.75 -442.54 -1.66 -22.32 16 14 C 0.49 16.73 7.00 87.66 0.61 17.34 16 15 O -0.58 -24.51 15.77 -3.01 -0.05 -24.55 16 16 C 0.11 2.97 5.83 85.64 0.50 3.47 16 17 N -0.60 -16.79 2.30 -845.66 -1.95 -18.74 16 18 C 0.10 2.24 6.55 86.48 0.57 2.81 16 19 C -0.14 -1.97 6.20 30.76 0.19 -1.78 16 20 C 0.10 1.44 7.21 86.48 0.62 2.06 16 21 N -0.73 -15.40 5.58 -479.83 -2.68 -18.08 16 22 C 0.71 21.12 8.18 179.45 1.47 22.59 16 23 O -0.64 -23.76 16.50 -3.99 -0.07 -23.83 16 24 C -0.09 -2.22 2.81 -10.07 -0.03 -2.25 16 25 C -0.12 -2.35 5.13 31.69 0.16 -2.19 16 26 C -0.11 -1.94 6.91 31.91 0.22 -1.72 16 27 C -0.12 -2.38 6.83 31.67 0.22 -2.17 16 28 C -0.11 -2.81 6.19 31.32 0.19 -2.61 16 29 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 30 H 0.36 17.23 4.68 -92.70 -0.43 16.80 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.65 7.13 -2.39 -0.02 1.64 16 33 H 0.41 9.85 6.96 -92.71 -0.65 9.20 16 34 H 0.12 3.09 7.32 -2.39 -0.02 3.07 16 35 H 0.13 2.91 7.86 -2.39 -0.02 2.89 16 36 H 0.09 1.96 7.86 -2.39 -0.02 1.94 16 37 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.42 7.53 8.88 -92.71 -0.82 6.71 16 43 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 44 H 0.07 1.34 5.96 -2.39 -0.01 1.32 16 45 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 49 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.04 1.14 7.11 -2.39 -0.02 1.12 16 Total: -1.00 -83.34 397.18 -0.33 -83.67 By element: Atomic # 1 Polarization: 45.94 SS G_CDS: -1.01 Total: 44.93 kcal Atomic # 6 Polarization: 24.24 SS G_CDS: 6.67 Total: 30.91 kcal Atomic # 7 Polarization: -151.22 SS G_CDS: -7.78 Total: -159.00 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.11 Total: -48.38 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.88 kcal Total: -83.34 -0.33 -83.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324482492.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.373 kcal (2) G-P(sol) polarization free energy of solvation -83.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds