Wall clock time and date at job start Tue Mar 31 2020 22:07:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48500 * 109.47065 * 239.99781 * 3 2 1 5 5 H 1.48494 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46809 * 119.99774 * 3 2 1 7 7 C 1.38815 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00347 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00160 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46989 * 62.16254 * 11 10 9 13 13 N 1.46498 * 109.47271 * 302.16376 * 11 10 9 14 14 C 1.34777 * 120.00265 * 158.30618 * 13 11 10 15 15 O 1.21281 * 119.99479 * 354.89390 * 14 13 11 16 16 C 1.50691 * 119.99996 * 174.89453 * 14 13 11 17 17 N 1.46504 * 109.47345 * 180.02562 * 16 14 13 18 18 C 1.46378 * 119.33449 * 89.99473 * 17 16 14 19 19 C 1.53241 * 109.15634 * 150.92129 * 18 17 16 20 20 C 1.53241 * 108.56084 * 55.48285 * 19 18 17 21 21 N 1.46388 * 109.15182 * 304.52118 * 20 19 18 22 22 C 1.34130 * 121.33909 * 29.31795 * 21 20 19 23 23 O 1.21591 * 118.69487 * 179.14904 * 22 21 20 24 24 C 1.53006 * 109.47183 * 182.16453 * 11 10 9 25 25 C 1.54263 * 110.03364 * 59.43142 * 24 11 10 26 26 C 1.54887 * 104.19697 * 217.11077 * 25 24 11 27 27 C 1.54895 * 102.75058 * 37.93978 * 26 25 24 28 28 C 1.53880 * 110.02984 * 302.26663 * 24 11 10 29 29 H 0.96998 * 119.99629 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99301 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47618 * 59.99750 * 10 9 7 32 32 H 1.09002 * 109.47361 * 299.99330 * 10 9 7 33 33 H 0.97005 * 119.99715 * 338.30774 * 13 11 10 34 34 H 1.08993 * 109.47649 * 59.99872 * 16 14 13 35 35 H 1.09007 * 109.47501 * 299.99506 * 16 14 13 36 36 H 1.09004 * 109.52166 * 31.02038 * 18 17 16 37 37 H 1.09004 * 109.58025 * 270.86171 * 18 17 16 38 38 H 1.08995 * 109.61763 * 295.76514 * 19 18 17 39 39 H 1.08996 * 109.77701 * 175.29330 * 19 18 17 40 40 H 1.08997 * 109.52490 * 184.61824 * 20 19 18 41 41 H 1.09001 * 109.57936 * 64.45208 * 20 19 18 42 42 H 0.97004 * 119.32590 * 209.03296 * 21 20 19 43 43 H 1.08992 * 110.01562 * 180.87781 * 24 11 10 44 44 H 1.09003 * 110.48682 * 335.78608 * 25 24 11 45 45 H 1.08992 * 110.48683 * 98.42873 * 25 24 11 46 46 H 1.09007 * 110.75129 * 279.62582 * 26 25 24 47 47 H 1.08997 * 110.91609 * 156.33039 * 26 25 24 48 48 H 1.08997 * 110.48282 * 203.38235 * 27 26 25 49 49 H 1.08992 * 110.59460 * 80.79211 * 27 26 25 50 50 H 1.08998 * 110.03138 * 238.57333 * 28 24 11 51 51 H 1.09001 * 110.03188 * 359.97438 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4626 -4.7842 -0.9073 13 7 0.1881 -4.7128 1.1707 14 6 -1.0108 -5.3287 1.1735 15 8 -1.4047 -5.8933 0.1750 16 6 -1.8617 -5.3156 2.4171 17 7 -3.1056 -6.0475 2.1655 18 6 -3.1584 -7.4855 2.4341 19 6 -4.5931 -7.8754 2.8052 20 6 -5.5285 -7.4228 1.6789 21 7 -5.3470 -5.9882 1.4513 22 6 -4.1717 -5.3873 1.6891 23 8 -4.0699 -4.1959 1.4684 24 6 1.8280 -6.1441 0.0557 25 6 2.6949 -6.2020 1.3304 26 6 3.9881 -6.9244 0.8779 27 6 4.2144 -6.3600 -0.5466 28 6 2.7942 -6.2446 -1.1378 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7146 0.8904 32 1 2.6847 -3.7146 -0.8895 33 1 0.4710 -4.1988 1.9431 34 1 -2.0942 -4.2856 2.6875 35 1 -1.3192 -5.7920 3.2337 36 1 -2.4900 -7.7264 3.2607 37 1 -2.8501 -8.0348 1.5445 38 1 -4.8767 -7.3842 3.7360 39 1 -4.6620 -8.9564 2.9260 40 1 -6.5623 -7.6187 1.9632 41 1 -5.2919 -7.9693 0.7659 42 1 -6.0908 -5.4622 1.1178 43 1 1.1282 -6.9795 0.0408 44 1 2.9232 -5.1960 1.6825 45 1 2.1906 -6.7744 2.1089 46 1 3.8368 -8.0035 0.8464 47 1 4.8236 -6.6719 1.5307 48 1 4.8190 -7.0478 -1.1378 49 1 4.6889 -5.3799 -0.4998 50 1 2.5637 -7.1293 -1.7313 51 1 2.7183 -5.3501 -1.7560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324482494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:20 Heat of formation + Delta-G solvation = -54.830616 kcal Electronic energy + Delta-G solvation = -30997.389843 eV Core-core repulsion = 26931.654180 eV Total energy + Delta-G solvation = -4065.735663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.76062 -39.61728 -38.01583 -36.42826 -35.22640 -34.72789 -33.44582 -31.35732 -31.00595 -29.73011 -28.56892 -27.92648 -26.15387 -25.51017 -23.44057 -22.94146 -21.81397 -20.80773 -20.23278 -19.00801 -18.70671 -17.59535 -17.30840 -17.21000 -16.81704 -16.15561 -15.63590 -15.34831 -15.06690 -14.67845 -14.49735 -14.45119 -14.04999 -14.00334 -13.86335 -13.66076 -13.37935 -13.15524 -12.86751 -12.47216 -12.39248 -12.00027 -11.82344 -11.60919 -11.50342 -11.39108 -11.06668 -10.94412 -10.90525 -10.84733 -10.77439 -10.64614 -10.38405 -10.16042 -10.01412 -9.84995 -9.73335 -9.66429 -9.13279 -8.82423 -8.57965 -8.48762 -6.87198 -5.69110 -2.99991 2.57068 3.02150 3.25914 3.47242 3.51541 3.53565 3.59744 3.81899 4.39268 4.53103 4.61864 4.76729 4.78620 4.79551 4.87923 4.97513 5.12624 5.14515 5.27299 5.31942 5.38510 5.47837 5.50378 5.55552 5.57035 5.63496 5.67655 5.78910 5.79060 5.84441 5.91566 6.00799 6.06209 6.16087 6.19618 6.22121 6.32488 6.37111 6.50420 6.51605 6.57730 6.62211 6.82927 7.05224 7.06709 7.73485 7.81219 7.96370 8.47596 8.62766 8.68850 9.58951 10.16138 10.50946 11.52449 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003832 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.018163 B = 7305.310052 C =10054.815932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.010 4.010 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.069 0.931 9 N -0.731 5.731 10 C 0.145 3.855 11 C 0.146 3.854 12 H 0.083 0.917 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.540 6.540 16 C 0.112 3.888 17 N -0.604 5.604 18 C 0.114 3.886 19 C -0.151 4.151 20 C 0.111 3.889 21 N -0.739 5.739 22 C 0.713 3.287 23 O -0.583 6.583 24 C -0.095 4.095 25 C -0.121 4.121 26 C -0.123 4.123 27 C -0.123 4.123 28 C -0.121 4.121 29 H 0.256 0.744 30 H 0.387 0.613 31 H 0.028 0.972 32 H 0.034 0.966 33 H 0.403 0.597 34 H 0.118 0.882 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.414 0.586 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.058 0.942 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.059 -22.188 8.120 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.377 4.377 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.017 3.983 11 C 0.041 3.959 12 H 0.101 0.899 13 N -0.360 5.360 14 C 0.285 3.715 15 O -0.417 6.417 16 C -0.016 4.016 17 N -0.341 5.341 18 C -0.009 4.009 19 C -0.189 4.189 20 C -0.014 4.014 21 N -0.398 5.398 22 C 0.414 3.586 23 O -0.460 6.460 24 C -0.116 4.116 25 C -0.158 4.158 26 C -0.161 4.161 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.066 0.934 30 H 0.221 0.779 31 H 0.045 0.955 32 H 0.052 0.948 33 H 0.238 0.762 34 H 0.136 0.864 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.251 0.749 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.087 0.913 50 H 0.077 0.923 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.030 -21.946 7.355 23.494 hybrid contribution -0.024 1.221 0.111 1.226 sum -4.055 -20.725 7.466 22.399 Atomic orbital electron populations 1.69677 1.05028 1.25797 1.56914 1.24763 0.95447 0.97631 1.02829 0.86301 0.78502 0.83770 0.77756 1.21339 1.21724 1.21305 1.19130 0.90872 0.84118 1.43561 0.91313 1.42380 1.06058 0.99717 1.89487 1.21052 0.93153 0.85201 0.98894 1.21229 0.91143 0.94367 0.89164 0.89898 1.45899 1.17618 1.52521 1.19991 1.21042 0.81524 0.78638 0.90344 1.90652 1.71515 1.45093 1.34468 1.21214 0.84186 1.00647 0.95547 1.46252 1.10449 1.08544 1.68872 1.21566 0.97011 0.80955 1.01374 1.22187 0.94934 1.02668 0.99143 1.21482 1.00041 0.81704 0.98193 1.44884 1.12773 1.09719 1.72413 1.15378 0.80447 0.84866 0.77941 1.91045 1.83113 1.13781 1.58093 1.22070 0.96751 0.97693 0.95042 1.22497 0.95190 1.01232 0.96922 1.22467 0.97675 0.99354 0.96585 1.22342 0.96805 1.01017 0.95884 1.22208 0.94147 1.02096 0.97449 0.93386 0.77915 0.95475 0.94843 0.76215 0.86432 0.87792 0.90134 0.91380 0.90460 0.88662 0.90116 0.91828 0.74891 0.91177 0.90397 0.92456 0.92161 0.91951 0.92261 0.91324 0.92281 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.99 13.06 55.49 0.72 -28.26 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -18.63 5.45 -59.91 -0.33 -18.96 16 10 C 0.14 2.85 5.24 -4.05 -0.02 2.83 16 11 C 0.15 2.53 1.82 -67.93 -0.12 2.40 16 12 H 0.08 1.71 7.61 -51.93 -0.40 1.31 16 13 N -0.71 -11.57 4.32 -53.81 -0.23 -11.80 16 14 C 0.50 8.47 7.81 -10.99 -0.09 8.39 16 15 O -0.54 -11.03 16.12 5.56 0.09 -10.94 16 16 C 0.11 1.51 5.83 -5.20 -0.03 1.48 16 17 N -0.60 -8.10 2.30 -181.16 -0.42 -8.52 16 18 C 0.11 1.03 6.55 -3.98 -0.03 1.00 16 19 C -0.15 -0.95 6.20 -26.48 -0.16 -1.12 16 20 C 0.11 0.81 7.21 -3.98 -0.03 0.79 16 21 N -0.74 -8.64 5.58 -65.52 -0.37 -9.00 16 22 C 0.71 11.48 8.18 -88.06 -0.72 10.76 16 23 O -0.58 -12.44 16.50 5.29 0.09 -12.35 16 24 C -0.10 -1.34 2.92 -89.50 -0.26 -1.60 16 25 C -0.12 -1.47 5.83 -25.07 -0.15 -1.61 16 26 C -0.12 -1.33 6.91 -24.74 -0.17 -1.50 16 27 C -0.12 -1.42 6.83 -25.07 -0.17 -1.59 16 28 C -0.12 -1.59 5.93 -25.61 -0.15 -1.75 16 29 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 30 H 0.39 10.79 7.43 -40.82 -0.30 10.49 16 31 H 0.03 0.52 5.98 -51.93 -0.31 0.21 16 32 H 0.03 0.68 6.41 -51.93 -0.33 0.34 16 33 H 0.40 6.19 8.58 -40.82 -0.35 5.84 16 34 H 0.12 1.79 7.32 -51.93 -0.38 1.41 16 35 H 0.10 0.95 7.86 -51.92 -0.41 0.54 16 36 H 0.08 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.41 4.41 8.88 -40.82 -0.36 4.05 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.08 1.03 5.68 -51.93 -0.30 0.73 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 51 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 LS Contribution 400.59 15.07 6.04 6.04 Total: -1.00 -37.97 400.59 -10.26 -48.23 By element: Atomic # 1 Polarization: 25.29 SS G_CDS: -8.49 Total: 16.81 kcal Atomic # 6 Polarization: 13.37 SS G_CDS: -2.35 Total: 11.02 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -0.62 Total: -76.54 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: 0.18 Total: -23.29 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.97 -10.26 -48.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324482494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.602 kcal (2) G-P(sol) polarization free energy of solvation -37.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds