Wall clock time and date at job start Tue Mar 31 2020 22:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 120.00035 * 2 1 4 4 H 1.48500 * 109.47065 * 239.99781 * 3 2 1 5 5 H 1.48494 * 109.46917 * 359.97438 * 3 2 1 6 6 H 1.48507 * 109.46809 * 119.99774 * 3 2 1 7 7 C 1.38815 * 119.99820 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99849 * 179.97438 * 7 2 1 9 9 N 1.36938 * 120.00347 * 0.02562 * 7 2 1 10 10 C 1.46492 * 120.00160 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47035 * 179.97438 * 10 9 7 12 12 H 1.09000 * 109.46989 * 62.16254 * 11 10 9 13 13 N 1.46498 * 109.47271 * 302.16376 * 11 10 9 14 14 C 1.34777 * 120.00265 * 158.30618 * 13 11 10 15 15 O 1.21281 * 119.99479 * 354.89390 * 14 13 11 16 16 C 1.50691 * 119.99996 * 174.89453 * 14 13 11 17 17 N 1.46504 * 109.47345 * 180.02562 * 16 14 13 18 18 C 1.46378 * 119.33449 * 89.99473 * 17 16 14 19 19 C 1.53241 * 109.15634 * 150.92129 * 18 17 16 20 20 C 1.53241 * 108.56084 * 55.48285 * 19 18 17 21 21 N 1.46388 * 109.15182 * 304.52118 * 20 19 18 22 22 C 1.34130 * 121.33909 * 29.31795 * 21 20 19 23 23 O 1.21591 * 118.69487 * 179.14904 * 22 21 20 24 24 C 1.53006 * 109.47183 * 182.16453 * 11 10 9 25 25 C 1.54263 * 110.03364 * 59.43142 * 24 11 10 26 26 C 1.54887 * 104.19697 * 217.11077 * 25 24 11 27 27 C 1.54895 * 102.75058 * 37.93978 * 26 25 24 28 28 C 1.53880 * 110.02984 * 302.26663 * 24 11 10 29 29 H 0.96998 * 119.99629 * 0.02562 * 1 2 3 30 30 H 0.96999 * 119.99301 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.47618 * 59.99750 * 10 9 7 32 32 H 1.09002 * 109.47361 * 299.99330 * 10 9 7 33 33 H 0.97005 * 119.99715 * 338.30774 * 13 11 10 34 34 H 1.08993 * 109.47649 * 59.99872 * 16 14 13 35 35 H 1.09007 * 109.47501 * 299.99506 * 16 14 13 36 36 H 1.09004 * 109.52166 * 31.02038 * 18 17 16 37 37 H 1.09004 * 109.58025 * 270.86171 * 18 17 16 38 38 H 1.08995 * 109.61763 * 295.76514 * 19 18 17 39 39 H 1.08996 * 109.77701 * 175.29330 * 19 18 17 40 40 H 1.08997 * 109.52490 * 184.61824 * 20 19 18 41 41 H 1.09001 * 109.57936 * 64.45208 * 20 19 18 42 42 H 0.97004 * 119.32590 * 209.03296 * 21 20 19 43 43 H 1.08992 * 110.01562 * 180.87781 * 24 11 10 44 44 H 1.09003 * 110.48682 * 335.78608 * 25 24 11 45 45 H 1.08992 * 110.48683 * 98.42873 * 25 24 11 46 46 H 1.09007 * 110.75129 * 279.62582 * 26 25 24 47 47 H 1.08997 * 110.91609 * 156.33039 * 26 25 24 48 48 H 1.08997 * 110.48282 * 203.38235 * 27 26 25 49 49 H 1.08992 * 110.59460 * 80.79211 * 27 26 25 50 50 H 1.08998 * 110.03138 * 238.57333 * 28 24 11 51 51 H 1.09001 * 110.03188 * 359.97438 * 28 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8197 0.0012 12 1 0.4626 -4.7842 -0.9073 13 7 0.1881 -4.7128 1.1707 14 6 -1.0108 -5.3287 1.1735 15 8 -1.4047 -5.8933 0.1750 16 6 -1.8617 -5.3156 2.4171 17 7 -3.1056 -6.0475 2.1655 18 6 -3.1584 -7.4855 2.4341 19 6 -4.5931 -7.8754 2.8052 20 6 -5.5285 -7.4228 1.6789 21 7 -5.3470 -5.9882 1.4513 22 6 -4.1717 -5.3873 1.6891 23 8 -4.0699 -4.1959 1.4684 24 6 1.8280 -6.1441 0.0557 25 6 2.6949 -6.2020 1.3304 26 6 3.9881 -6.9244 0.8779 27 6 4.2144 -6.3600 -0.5466 28 6 2.7942 -6.2446 -1.1378 29 1 -0.4849 0.8401 -0.0004 30 1 0.3556 -2.3880 0.0005 31 1 2.6848 -3.7146 0.8904 32 1 2.6847 -3.7146 -0.8895 33 1 0.4710 -4.1988 1.9431 34 1 -2.0942 -4.2856 2.6875 35 1 -1.3192 -5.7920 3.2337 36 1 -2.4900 -7.7264 3.2607 37 1 -2.8501 -8.0348 1.5445 38 1 -4.8767 -7.3842 3.7360 39 1 -4.6620 -8.9564 2.9260 40 1 -6.5623 -7.6187 1.9632 41 1 -5.2919 -7.9693 0.7659 42 1 -6.0908 -5.4622 1.1178 43 1 1.1282 -6.9795 0.0408 44 1 2.9232 -5.1960 1.6825 45 1 2.1906 -6.7744 2.1089 46 1 3.8368 -8.0035 0.8464 47 1 4.8236 -6.6719 1.5307 48 1 4.8190 -7.0478 -1.1378 49 1 4.6889 -5.3799 -0.4998 50 1 2.5637 -7.1293 -1.7313 51 1 2.7183 -5.3501 -1.7560 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324482494.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:19 Heat of formation + Delta-G solvation = -83.639801 kcal Electronic energy + Delta-G solvation = -30998.639103 eV Core-core repulsion = 26931.654180 eV Total energy + Delta-G solvation = -4066.984923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.86845 -40.89935 -39.24949 -37.49562 -36.74595 -35.82427 -35.18288 -33.05937 -32.05549 -31.17504 -29.57055 -28.95343 -27.77503 -26.41195 -25.09012 -24.04716 -23.27347 -21.97267 -21.27673 -20.06017 -19.94993 -19.10554 -18.58571 -18.30254 -18.25944 -17.47202 -16.75818 -16.48341 -16.37224 -16.22655 -15.75610 -15.60894 -15.25009 -15.17258 -15.04303 -14.87285 -14.63687 -14.46604 -14.19294 -14.01553 -13.54115 -13.23847 -13.07240 -12.75457 -12.72443 -12.63726 -12.32165 -12.25031 -12.16970 -12.14050 -11.90322 -11.87114 -11.82941 -11.77618 -11.37670 -11.24944 -11.20839 -11.05530 -10.87504 -10.17050 -9.93243 -9.59827 -9.00135 -7.93082 -5.24383 1.46217 1.50018 1.54714 1.56507 1.67582 2.08523 2.40575 2.56101 2.91328 3.40221 3.63775 3.69543 3.75657 3.79790 3.92049 3.98855 4.05947 4.10572 4.19568 4.32777 4.35918 4.40242 4.49674 4.54252 4.63873 4.69204 4.70578 4.76746 4.78220 4.82453 4.85689 4.88001 4.94966 5.13190 5.15793 5.17949 5.22008 5.31461 5.34046 5.38697 5.49016 5.50006 5.56628 5.59109 5.67034 6.07949 6.25433 6.61264 6.79349 7.29652 7.32110 7.53218 8.06709 8.29786 9.29527 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008555 B = 0.003832 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3272.018163 B = 7305.310052 C =10054.815932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.076 4.076 3 Si 0.976 3.024 4 H -0.279 1.279 5 H -0.300 1.300 6 H -0.271 1.271 7 C -0.245 4.245 8 H 0.081 0.919 9 N -0.745 5.745 10 C 0.150 3.850 11 C 0.156 3.844 12 H 0.040 0.960 13 N -0.704 5.704 14 C 0.496 3.504 15 O -0.581 6.581 16 C 0.115 3.885 17 N -0.603 5.603 18 C 0.104 3.896 19 C -0.142 4.142 20 C 0.101 3.899 21 N -0.734 5.734 22 C 0.698 3.302 23 O -0.652 6.652 24 C -0.085 4.085 25 C -0.116 4.116 26 C -0.116 4.116 27 C -0.121 4.121 28 C -0.124 4.124 29 H 0.249 0.751 30 H 0.370 0.630 31 H 0.048 0.952 32 H 0.034 0.966 33 H 0.409 0.591 34 H 0.097 0.903 35 H 0.157 0.843 36 H 0.112 0.888 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.133 0.867 40 H 0.115 0.885 41 H 0.064 0.936 42 H 0.415 0.585 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.059 0.941 50 H 0.068 0.932 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.557 -24.874 10.096 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.268 4.268 3 Si 0.804 3.196 4 H -0.205 1.205 5 H -0.227 1.227 6 H -0.197 1.197 7 C -0.376 4.376 8 H 0.099 0.901 9 N -0.388 5.388 10 C 0.023 3.977 11 C 0.051 3.949 12 H 0.059 0.941 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.461 6.461 16 C -0.013 4.013 17 N -0.339 5.339 18 C -0.017 4.017 19 C -0.180 4.180 20 C -0.022 4.022 21 N -0.391 5.391 22 C 0.399 3.601 23 O -0.535 6.535 24 C -0.105 4.105 25 C -0.153 4.153 26 C -0.153 4.153 27 C -0.158 4.158 28 C -0.162 4.162 29 H 0.057 0.943 30 H 0.202 0.798 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.245 0.755 34 H 0.115 0.885 35 H 0.175 0.825 36 H 0.130 0.870 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.133 0.867 41 H 0.082 0.918 42 H 0.252 0.748 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.087 0.913 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.484 -24.733 9.360 26.561 hybrid contribution -0.503 1.941 -0.571 2.084 sum -2.987 -22.792 8.789 24.610 Atomic orbital electron populations 1.69879 1.06916 1.26022 1.59311 1.25629 0.96202 1.01340 1.03624 0.85185 0.77068 0.78962 0.78361 1.20484 1.22676 1.19711 1.19606 0.91563 0.85058 1.41410 0.90081 1.42591 1.05483 1.01196 1.89488 1.21174 0.93382 0.83672 0.99443 1.21010 0.90420 0.95483 0.88013 0.94144 1.45871 1.17653 1.52323 1.19666 1.21720 0.81443 0.77648 0.90999 1.90624 1.72274 1.46988 1.36171 1.21307 0.84324 1.00586 0.95083 1.46421 1.09367 1.10315 1.67798 1.21930 0.99837 0.77884 1.02060 1.22225 0.92454 1.04924 0.98390 1.21864 1.02556 0.78745 0.98990 1.44969 1.11352 1.11678 1.71063 1.15836 0.81981 0.84390 0.77921 1.90986 1.84547 1.16913 1.61038 1.21964 0.96693 0.94900 0.96950 1.22456 0.95690 1.01208 0.95980 1.22456 0.97102 0.99943 0.95842 1.22338 0.95477 1.01185 0.96816 1.22231 0.95383 1.01518 0.97038 0.94252 0.79849 0.93449 0.94839 0.75526 0.88524 0.82520 0.86989 0.92548 0.90139 0.84879 0.86727 0.91794 0.74781 0.91794 0.91443 0.90828 0.90711 0.90552 0.90489 0.92200 0.91340 0.92950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.94 13.06 21.65 0.28 -62.66 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 3 Si 0.98 47.39 29.55 68.60 2.03 49.41 16 4 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.24 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 9 N -0.74 -39.03 5.45 -343.47 -1.87 -40.90 16 10 C 0.15 5.97 5.24 86.38 0.45 6.42 16 11 C 0.16 5.59 1.82 44.99 0.08 5.67 16 12 H 0.04 1.79 7.61 -2.39 -0.02 1.77 16 13 N -0.70 -23.58 4.32 -442.53 -1.91 -25.49 16 14 C 0.50 17.32 7.81 87.65 0.68 18.00 16 15 O -0.58 -24.79 16.12 -3.03 -0.05 -24.84 16 16 C 0.11 3.11 5.83 85.63 0.50 3.61 16 17 N -0.60 -16.04 2.30 -845.67 -1.95 -17.99 16 18 C 0.10 1.64 6.55 86.48 0.57 2.21 16 19 C -0.14 -1.33 6.20 30.76 0.19 -1.14 16 20 C 0.10 1.28 7.21 86.48 0.62 1.90 16 21 N -0.73 -17.20 5.58 -479.84 -2.68 -19.88 16 22 C 0.70 23.29 8.18 179.45 1.47 24.76 16 23 O -0.65 -29.80 16.50 -4.00 -0.07 -29.87 16 24 C -0.08 -2.34 2.92 -10.07 -0.03 -2.37 16 25 C -0.12 -2.54 5.83 31.67 0.18 -2.35 16 26 C -0.12 -2.12 6.91 31.89 0.22 -1.90 16 27 C -0.12 -2.53 6.83 31.67 0.22 -2.31 16 28 C -0.12 -3.18 5.93 31.32 0.19 -2.99 16 29 H 0.25 15.79 8.31 -92.71 -0.77 15.02 16 30 H 0.37 21.69 7.43 -92.71 -0.69 21.00 16 31 H 0.05 1.75 5.98 -2.39 -0.01 1.74 16 32 H 0.03 1.37 6.41 -2.39 -0.02 1.35 16 33 H 0.41 12.70 8.58 -92.70 -0.80 11.91 16 34 H 0.10 3.10 7.32 -2.39 -0.02 3.08 16 35 H 0.16 2.46 7.86 -2.38 -0.02 2.44 16 36 H 0.11 1.06 7.86 -2.39 -0.02 1.04 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 40 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.41 9.14 8.88 -92.71 -0.82 8.32 16 43 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.07 1.63 5.68 -2.39 -0.01 1.62 16 45 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 48 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 51 H 0.05 1.56 6.17 -2.39 -0.01 1.55 16 Total: -1.00 -88.48 400.59 -0.91 -89.40 By element: Atomic # 1 Polarization: 51.73 SS G_CDS: -1.34 Total: 50.39 kcal Atomic # 6 Polarization: 25.78 SS G_CDS: 6.65 Total: 32.43 kcal Atomic # 7 Polarization: -158.79 SS G_CDS: -8.13 Total: -166.92 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.11 Total: -54.71 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.41 kcal Total: -88.48 -0.91 -89.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324482494.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.757 kcal (2) G-P(sol) polarization free energy of solvation -88.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds