Wall clock time and date at job start Tue Mar 31 2020 21:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42904 * 114.00029 * 2 1 4 4 C 1.52998 * 109.47631 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.69902 * 51.59934 * 4 3 2 6 6 C 1.53190 * 109.58869 * 171.95793 * 4 3 2 7 7 C 1.53039 * 109.33807 * 174.43608 * 6 4 3 8 8 C 1.53040 * 109.53978 * 298.62147 * 7 6 4 9 9 C 1.53191 * 109.31212 * 61.36460 * 8 7 6 10 10 N 1.46924 * 108.77738 * 305.36227 * 9 8 7 11 11 C 1.34775 * 120.63510 * 233.62807 * 10 9 8 12 12 O 1.21344 * 120.00211 * 172.27920 * 11 10 9 13 13 C 1.49453 * 119.99752 * 352.28701 * 11 10 9 14 14 O 1.21347 * 119.99819 * 6.22310 * 13 11 10 15 15 N 1.34778 * 119.99603 * 186.22109 * 13 11 10 16 16 C 1.46920 * 120.63232 * 6.65044 * 15 13 11 17 17 C 1.52763 * 109.00829 * 233.58195 * 16 15 13 18 18 C 1.53039 * 109.38193 * 305.59058 * 17 16 15 19 19 C 1.50707 * 109.45710 * 181.25821 * 18 17 16 20 20 H 1.08000 * 119.99651 * 239.92538 * 19 18 17 21 21 C 1.37878 * 120.00061 * 59.93433 * 19 18 17 22 22 N 1.31515 * 119.99823 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00280 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47145 * 89.99495 * 23 21 19 25 25 H 1.48499 * 109.47411 * 210.00004 * 23 21 19 26 26 H 1.48505 * 109.46990 * 329.99861 * 23 21 19 27 27 C 1.53036 * 109.53953 * 61.23844 * 18 17 16 28 28 C 1.46932 * 120.62559 * 186.92842 * 15 13 11 29 29 H 1.09002 * 109.46937 * 60.00656 * 1 2 3 30 30 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47658 * 300.00396 * 1 2 3 32 32 H 1.08996 * 109.47002 * 59.99577 * 3 2 1 33 33 H 1.09005 * 109.46820 * 299.99832 * 3 2 1 34 34 H 1.08999 * 109.49609 * 54.47615 * 6 4 3 35 35 H 1.08995 * 109.49731 * 294.40876 * 6 4 3 36 36 H 1.09004 * 109.46026 * 58.64046 * 7 6 4 37 37 H 1.08998 * 109.46288 * 178.61433 * 7 6 4 38 38 H 1.09002 * 109.49688 * 181.31198 * 8 7 6 39 39 H 1.09001 * 109.49808 * 301.37893 * 8 7 6 40 40 H 1.09003 * 109.59154 * 65.15622 * 9 8 7 41 41 H 1.09005 * 109.58536 * 185.57701 * 9 8 7 42 42 H 1.09002 * 109.58760 * 353.41262 * 16 15 13 43 43 H 1.08993 * 109.58657 * 113.84494 * 16 15 13 44 44 H 1.08996 * 109.56683 * 185.54981 * 17 16 15 45 45 H 1.09004 * 109.36138 * 65.49986 * 17 16 15 46 46 H 1.09003 * 109.46159 * 301.21636 * 18 17 16 47 47 H 0.96997 * 120.00040 * 180.02562 * 22 21 19 48 48 H 1.09005 * 109.49604 * 178.67984 * 27 18 17 49 49 H 1.09004 * 109.49921 * 58.59020 * 27 18 17 50 50 H 1.08998 * 109.58369 * 246.15894 * 28 15 13 51 51 H 1.08998 * 109.58348 * 6.58215 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8517 0.5202 -0.8033 6 6 4.1602 2.5689 -0.2013 7 6 5.6806 2.4638 -0.0614 8 6 6.0326 1.9763 1.3459 9 6 5.4297 0.5853 1.5658 10 7 3.9875 0.6463 1.2916 11 6 3.0957 0.2169 2.2063 12 8 1.9093 0.3999 2.0295 13 6 3.5682 -0.4844 3.4387 14 8 4.7562 -0.5678 3.6715 15 7 2.6748 -1.0241 4.2913 16 6 1.2453 -1.0600 3.9539 17 6 0.4495 -0.4218 5.0911 18 6 0.8023 -1.1148 6.4091 19 6 -0.0048 -0.5071 7.5275 20 1 0.4959 -0.0385 8.3618 21 6 -1.3823 -0.5496 7.4856 22 7 -1.9919 -1.1199 6.4694 23 14 -2.3826 0.2029 8.8720 24 1 -2.6647 1.6276 8.5621 25 1 -3.6630 -0.5354 9.0159 26 1 -1.6152 0.1149 10.1404 27 6 2.2938 -0.9332 6.6997 28 6 3.1112 -1.5823 5.5785 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.7724 3.2562 0.5505 35 1 3.9110 2.9389 -1.1957 36 1 6.0650 1.7575 -0.7972 37 1 6.1292 3.4430 -0.2290 38 1 7.1162 1.9240 1.4523 39 1 5.6277 2.6696 2.0831 40 1 5.9004 -0.1282 0.8894 41 1 5.5925 0.2755 2.5981 42 1 1.0732 -0.5038 3.0324 43 1 0.9263 -2.0941 3.8241 44 1 -0.6173 -0.5314 4.8964 45 1 0.7006 0.6369 5.1581 46 1 0.5740 -2.1779 6.3330 47 1 -2.9610 -1.1495 6.4396 48 1 2.5395 -1.4069 7.6502 49 1 2.5275 0.1303 6.7516 50 1 2.9475 -2.6599 5.5837 51 1 4.1698 -1.3706 5.7284 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325193225.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:21 Heat of formation + Delta-G solvation = -85.170180 kcal Electronic energy + Delta-G solvation = -32200.517921 eV Core-core repulsion = 28101.173885 eV Total energy + Delta-G solvation = -4099.344036 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.36811 -40.50177 -38.93817 -38.34492 -37.99178 -35.39769 -33.82769 -33.08320 -32.98890 -31.73163 -28.78450 -28.22782 -27.06954 -25.88808 -25.10311 -24.30726 -23.79762 -22.75469 -21.77972 -20.86210 -20.01226 -18.49936 -18.05106 -17.94331 -17.33892 -17.15979 -17.03726 -16.67612 -16.47266 -15.90691 -15.75015 -15.53583 -15.29789 -15.11935 -14.70903 -14.58549 -14.55456 -14.47462 -14.22171 -13.85806 -13.67178 -13.52582 -13.25979 -12.98178 -12.88795 -12.80150 -12.50890 -12.41409 -12.19301 -12.13815 -11.97034 -11.89720 -11.80555 -11.61377 -11.50358 -11.16562 -11.01899 -10.60401 -10.44092 -10.39351 -9.74207 -9.60703 -9.40802 -8.07345 -6.21434 0.38544 1.30954 1.40764 1.41972 1.51522 2.18015 2.39750 2.43663 2.91758 3.16468 3.19008 3.75190 3.93234 4.04860 4.11011 4.18754 4.26376 4.27027 4.28156 4.35080 4.40763 4.50054 4.52867 4.56048 4.62037 4.68710 4.78338 4.80232 4.85967 4.92058 4.96267 4.97647 4.98883 5.04112 5.13597 5.16638 5.18717 5.20146 5.26130 5.43283 5.46011 5.49964 5.61036 5.68791 5.96936 6.06567 6.12263 6.36334 6.38185 6.41470 6.75628 6.88712 7.01892 7.46163 8.96167 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.015136 B = 0.003461 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.421715 B = 8087.112381 C = 9053.567548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.396 6.396 3 C 0.066 3.934 4 C 0.143 3.857 5 H 0.092 0.908 6 C -0.122 4.122 7 C -0.115 4.115 8 C -0.129 4.129 9 C 0.049 3.951 10 N -0.573 5.573 11 C 0.505 3.495 12 O -0.491 6.491 13 C 0.501 3.499 14 O -0.538 6.538 15 N -0.566 5.566 16 C 0.060 3.940 17 C -0.103 4.103 18 C 0.043 3.957 19 C -0.535 4.535 20 H 0.050 0.950 21 C 0.015 3.985 22 N -0.913 5.913 23 Si 0.951 3.049 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C -0.113 4.113 28 C 0.112 3.888 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.029 0.971 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.137 0.863 42 H 0.152 0.848 43 H 0.049 0.951 44 H 0.074 0.926 45 H 0.019 0.981 46 H 0.001 0.999 47 H 0.261 0.739 48 H 0.071 0.929 49 H 0.044 0.956 50 H 0.075 0.925 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.916 6.153 -17.050 22.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.315 6.315 3 C -0.010 4.010 4 C 0.041 3.959 5 H 0.109 0.891 6 C -0.160 4.160 7 C -0.153 4.153 8 C -0.168 4.168 9 C -0.071 4.071 10 N -0.307 5.307 11 C 0.288 3.712 12 O -0.368 6.368 13 C 0.285 3.715 14 O -0.419 6.419 15 N -0.297 5.297 16 C -0.060 4.060 17 C -0.141 4.141 18 C 0.024 3.976 19 C -0.573 4.573 20 H 0.068 0.932 21 C -0.184 4.184 22 N -0.552 5.552 23 Si 0.777 3.223 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.151 4.151 28 C -0.010 4.010 29 H 0.069 0.931 30 H 0.098 0.902 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.154 0.846 42 H 0.168 0.832 43 H 0.067 0.933 44 H 0.092 0.908 45 H 0.038 0.962 46 H 0.019 0.981 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.063 0.937 50 H 0.093 0.907 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.822 5.979 -17.079 22.770 hybrid contribution -1.305 0.291 1.114 1.740 sum 12.516 6.271 -15.966 21.234 Atomic orbital electron populations 1.22563 0.80654 1.02406 0.99572 1.87802 1.20345 1.28251 1.95130 1.22656 0.91922 0.86055 1.00386 1.21623 0.93148 0.96858 0.84282 0.89054 1.21895 0.96607 0.93791 1.03699 1.21534 0.94370 1.02782 0.96578 1.21901 1.01730 0.95341 0.97783 1.23235 0.77273 0.98683 1.07897 1.48013 1.07650 1.59769 1.15264 1.19934 0.86236 0.80770 0.84255 1.90351 1.16360 1.55305 1.74815 1.20447 0.85850 0.79996 0.85204 1.90268 1.15581 1.60368 1.75715 1.48233 1.08759 1.55063 1.17630 1.23197 0.77476 1.01912 1.03447 1.21575 1.00729 0.96740 0.95089 1.18656 0.90939 0.94709 0.93291 1.21552 0.91908 1.37432 1.06394 0.93171 1.25691 0.98964 0.95720 0.98001 1.69982 1.09057 1.44926 1.31272 0.85666 0.78174 0.78388 0.80069 1.20422 1.20838 1.19401 1.21853 0.96457 0.99495 0.97259 1.21836 0.99707 0.97914 0.81538 0.93120 0.90158 0.95271 0.92777 0.91835 0.92141 0.87996 0.90546 0.89792 0.88879 0.92923 0.90773 0.84630 0.83228 0.93252 0.90789 0.96187 0.98087 0.93012 0.91011 0.93735 0.90723 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.14 10.55 113.37 1.20 2.34 16 2 O -0.40 -11.39 8.33 -124.92 -1.04 -12.43 16 3 C 0.07 1.57 4.51 71.98 0.32 1.89 16 4 C 0.14 2.89 3.17 44.96 0.14 3.03 16 5 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 6 C -0.12 -1.73 5.36 30.67 0.16 -1.56 16 7 C -0.12 -1.37 5.88 30.62 0.18 -1.19 16 8 C -0.13 -2.06 6.08 30.67 0.19 -1.88 16 9 C 0.05 1.07 6.16 86.36 0.53 1.60 16 10 N -0.57 -14.54 2.97 -796.42 -2.37 -16.90 16 11 C 0.50 16.30 7.34 87.27 0.64 16.94 16 12 O -0.49 -17.11 6.65 20.83 0.14 -16.97 16 13 C 0.50 17.63 7.68 87.27 0.67 18.30 16 14 O -0.54 -18.65 12.47 -3.24 -0.04 -18.69 16 15 N -0.57 -21.44 2.98 -821.33 -2.45 -23.88 16 16 C 0.06 2.47 6.25 86.22 0.54 3.01 16 17 C -0.10 -4.99 5.14 30.53 0.16 -4.84 16 18 C 0.04 2.14 2.07 -11.51 -0.02 2.12 16 19 C -0.53 -29.63 8.56 25.60 0.22 -29.41 16 20 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 21 C 0.02 0.84 5.30 84.65 0.45 1.28 16 22 N -0.91 -52.44 11.30 21.45 0.24 -52.19 16 23 Si 0.95 43.82 29.54 68.60 2.03 45.85 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 25 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 27 C -0.11 -4.68 5.30 30.67 0.16 -4.52 16 28 C 0.11 4.04 6.41 86.36 0.55 4.59 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.03 0.84 7.83 -2.39 -0.02 0.83 16 32 H 0.05 1.54 6.30 -2.39 -0.02 1.52 16 33 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.14 3.65 3.93 -75.51 -0.30 3.35 16 42 H 0.15 6.10 3.77 -79.99 -0.30 5.80 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 4.04 6.03 -2.39 -0.01 4.03 16 45 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 46 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 47 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 48 H 0.07 2.81 8.14 -2.38 -0.02 2.79 16 49 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 50 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 51 H 0.10 3.17 7.05 -2.39 -0.02 3.15 16 Total: -1.00 -63.82 380.69 2.94 -60.88 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: 0.33 Total: 22.61 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.09 Total: 11.71 kcal Atomic # 7 Polarization: -88.41 SS G_CDS: -4.57 Total: -92.98 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -0.94 Total: -48.08 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -63.82 2.94 -60.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325193225.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.287 kcal (2) G-P(sol) polarization free energy of solvation -63.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds