Wall clock time and date at job start Tue Mar 31 2020 21:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99773 * 2 1 4 4 C 1.53002 * 109.46982 * 180.02562 * 3 2 1 5 5 C 1.53009 * 112.84528 * 306.09279 * 4 3 2 6 6 N 1.46500 * 109.46820 * 302.38442 * 5 4 3 7 7 C 1.34779 * 119.99690 * 184.36535 * 6 5 4 8 8 O 1.21344 * 119.99883 * 359.97438 * 7 6 5 9 9 C 1.49449 * 119.99929 * 180.02562 * 7 6 5 10 10 O 1.21347 * 119.99970 * 354.51123 * 9 7 6 11 11 N 1.34779 * 119.99999 * 174.50609 * 9 7 6 12 12 C 1.46927 * 120.62911 * 168.86437 * 11 9 7 13 13 C 1.53195 * 108.89257 * 126.46318 * 12 11 9 14 14 C 1.53048 * 109.30662 * 54.56698 * 13 12 11 15 15 C 1.50699 * 109.45719 * 178.62866 * 14 13 12 16 16 H 1.08005 * 120.00086 * 5.75492 * 15 14 13 17 17 C 1.37879 * 120.00134 * 185.75336 * 15 14 13 18 18 N 1.31516 * 119.99861 * 7.79254 * 17 15 14 19 19 Si 1.86801 * 119.99979 * 187.79832 * 17 15 14 20 20 H 1.48501 * 109.47186 * 94.98828 * 19 17 15 21 21 H 1.48503 * 109.46672 * 214.98409 * 19 17 15 22 22 H 1.48496 * 109.47378 * 334.98732 * 19 17 15 23 23 C 1.53040 * 109.53726 * 298.63115 * 14 13 12 24 24 C 1.46957 * 120.65414 * 348.68579 * 11 9 7 25 25 C 1.53779 * 113.61562 * 77.28436 * 4 3 2 26 26 C 1.53958 * 87.01812 * 89.23154 * 25 4 3 27 27 C 1.53781 * 87.11176 * 25.36240 * 26 25 4 28 28 H 1.09000 * 109.47666 * 300.00000 * 1 2 3 29 29 H 1.09002 * 109.47312 * 60.00155 * 1 2 3 30 30 H 1.09006 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47036 * 59.99867 * 3 2 1 32 32 H 1.09001 * 109.46996 * 299.99531 * 3 2 1 33 33 H 1.09001 * 109.46742 * 182.38620 * 5 4 3 34 34 H 1.08995 * 109.47469 * 62.38780 * 5 4 3 35 35 H 0.97000 * 120.00328 * 4.35781 * 6 5 4 36 36 H 1.08997 * 109.58692 * 6.61464 * 12 11 9 37 37 H 1.08997 * 109.58875 * 246.32637 * 12 11 9 38 38 H 1.08994 * 109.50207 * 174.51198 * 13 12 11 39 39 H 1.08997 * 109.50058 * 294.58670 * 13 12 11 40 40 H 1.08995 * 109.46319 * 58.65575 * 14 13 12 41 41 H 0.96992 * 119.99724 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.49684 * 181.31966 * 23 14 13 43 43 H 1.09003 * 109.50194 * 301.41850 * 23 14 13 44 44 H 1.09008 * 109.46515 * 113.74883 * 24 11 9 45 45 H 1.08996 * 109.71307 * 353.46734 * 24 11 9 46 46 H 1.09001 * 113.61737 * 203.74790 * 25 4 3 47 47 H 1.08994 * 113.61784 * 334.65624 * 25 4 3 48 48 H 1.08997 * 113.53748 * 270.80972 * 26 25 4 49 49 H 1.09004 * 113.74473 * 139.94060 * 26 25 4 50 50 H 1.08992 * 113.61489 * 220.09178 * 27 26 25 51 51 H 1.09000 * 113.69458 * 89.19624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0625 0.3095 1.1384 6 7 3.6125 0.8548 2.4215 7 6 4.0304 0.2964 3.5748 8 8 4.7790 -0.6583 3.5502 9 6 3.5709 0.8523 4.8837 10 8 2.9032 1.8651 4.9119 11 7 3.8981 0.2286 6.0329 12 6 3.6693 0.8803 7.3297 13 6 2.8489 -0.0593 8.2191 14 6 3.5560 -1.4135 8.3123 15 6 2.7691 -2.3296 9.2137 16 1 1.8105 -2.0152 9.5993 17 6 3.2729 -3.5693 9.5461 18 7 4.5013 -3.8927 9.2056 19 14 2.2105 -4.7895 10.4798 20 1 1.5500 -5.7083 9.5181 21 1 3.0603 -5.5747 11.4107 22 1 1.1766 -4.0556 11.2530 23 6 3.6575 -2.0349 6.9174 24 6 4.4869 -1.1177 6.0133 25 6 4.1244 0.8271 -1.3754 26 6 4.1930 2.3405 -1.6500 27 6 4.2602 2.5351 -0.1261 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8463 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 5.1521 0.2957 1.1115 34 1 3.6832 -0.7057 1.0220 35 1 3.0138 1.6178 2.4411 36 1 3.1224 1.8111 7.1794 37 1 4.6264 1.0917 7.8064 38 1 2.7560 0.3719 9.2158 39 1 1.8572 -0.1952 7.7876 40 1 4.5566 -1.2733 8.7211 41 1 4.8558 -4.7646 9.4397 42 1 4.1402 -3.0097 6.9877 43 1 2.6584 -2.1525 6.4978 44 1 5.5119 -1.0713 6.3815 45 1 4.4818 -1.5065 4.9950 46 1 5.1023 0.3486 -1.3204 47 1 3.4280 0.2959 -2.0241 48 1 3.2863 2.7424 -2.1020 49 1 5.0990 2.6515 -2.1703 50 1 3.6732 3.3807 0.2324 51 1 5.2747 2.5248 0.2725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325587686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:29 Heat of formation + Delta-G solvation = -90.717045 kcal Electronic energy + Delta-G solvation = -30484.940455 eV Core-core repulsion = 26385.355889 eV Total energy + Delta-G solvation = -4099.584566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.83928 -40.08146 -38.30425 -37.41772 -36.96074 -34.69322 -33.35200 -31.20288 -30.11785 -29.70216 -27.72862 -26.47366 -26.26054 -25.67216 -24.31839 -22.73776 -22.37914 -21.67540 -20.25876 -19.16949 -18.69037 -17.40357 -16.84607 -16.65442 -16.30223 -16.15471 -16.08671 -15.71789 -15.34787 -14.99078 -14.60944 -14.50753 -14.28489 -14.05423 -13.73468 -13.25817 -13.09470 -13.02745 -12.82372 -12.68569 -12.59488 -12.30436 -12.16255 -11.89388 -11.68159 -11.58091 -11.39813 -10.96054 -10.88525 -10.84862 -10.73860 -10.61580 -10.59438 -10.36130 -10.13511 -9.96205 -9.68742 -9.25251 -9.20525 -9.06738 -8.61805 -8.31486 -8.07438 -6.01194 -4.03662 1.67392 2.57102 3.31104 3.31788 3.38616 3.41407 3.46088 3.78459 4.11806 4.18578 4.35718 4.44828 4.48630 4.58492 4.62634 4.90842 5.01806 5.08023 5.13383 5.17446 5.30862 5.37730 5.38607 5.42961 5.48164 5.55163 5.60791 5.64803 5.73214 5.86332 5.88522 5.91526 6.00439 6.09743 6.18082 6.23286 6.44079 6.59800 6.70526 6.80599 6.82387 6.99788 7.13663 7.17282 7.27958 7.68057 7.77070 7.91245 7.97432 8.01805 8.27904 8.43376 9.00026 9.60107 11.07393 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002468 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.534468 B =11342.038885 C =11759.801207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.083 3.917 4 C -0.096 4.096 5 C 0.139 3.861 6 N -0.700 5.700 7 C 0.508 3.492 8 O -0.507 6.507 9 C 0.501 3.499 10 O -0.545 6.545 11 N -0.564 5.564 12 C 0.107 3.893 13 C -0.122 4.122 14 C 0.045 3.955 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.887 3.113 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.117 4.117 24 C 0.072 3.928 25 C -0.120 4.120 26 C -0.143 4.143 27 C -0.128 4.128 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.408 0.592 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.260 0.740 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.063 0.937 45 H 0.118 0.882 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.071 0.929 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.961 12.517 -22.267 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.006 3.994 4 C -0.097 4.097 5 C 0.016 3.984 6 N -0.353 5.353 7 C 0.290 3.710 8 O -0.383 6.383 9 C 0.283 3.717 10 O -0.424 6.424 11 N -0.295 5.295 12 C -0.014 4.014 13 C -0.160 4.160 14 C 0.026 3.974 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.715 3.285 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.156 4.156 24 C -0.048 4.048 25 C -0.158 4.158 26 C -0.180 4.180 27 C -0.165 4.165 28 H 0.062 0.938 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.106 0.894 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.106 0.894 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.090 0.910 50 H 0.090 0.910 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.510 12.020 -22.228 25.315 hybrid contribution -1.068 -0.263 0.646 1.276 sum -2.578 11.757 -21.582 24.711 Atomic orbital electron populations 1.22759 0.80761 1.03053 0.99936 1.87897 1.19738 1.27113 1.95359 1.22239 0.91439 0.85291 1.00418 1.22117 0.93816 0.97508 0.96234 1.21341 0.99226 0.97795 0.80087 1.45707 1.49763 1.34896 1.04974 1.20340 0.81629 0.83522 0.85559 1.90588 1.35136 1.25951 1.86614 1.19932 0.81551 0.84867 0.85316 1.90680 1.38325 1.26230 1.87201 1.48164 1.58326 1.18090 1.04926 1.21883 1.00565 0.96688 0.82295 1.22003 0.98693 0.97732 0.97556 1.18690 0.96538 0.89781 0.92374 1.21162 1.04683 1.00420 1.29020 0.92734 1.24964 0.94718 0.98355 0.95807 1.69943 1.13962 1.21454 1.47292 0.86658 0.80558 0.81526 0.79733 1.20753 1.21312 1.19956 1.21960 0.97762 0.99680 0.96171 1.22940 0.97072 0.80057 1.04752 1.22905 1.01533 0.96596 0.94756 1.22892 1.02296 0.96555 0.96279 1.22996 1.01096 0.95794 0.96640 0.93847 0.94217 0.89420 0.92939 0.92676 0.90756 0.90195 0.75623 0.90173 0.91484 0.91801 0.92919 0.94704 0.92996 0.89374 0.94257 0.91879 0.86448 0.89401 0.90639 0.90193 0.91042 0.91011 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -3.83 10.11 -35.23 -0.36 -4.19 16 3 C 0.08 0.66 4.94 37.16 0.18 0.85 16 4 C -0.10 -0.75 0.74 -153.69 -0.11 -0.87 16 5 C 0.14 1.46 4.75 -4.04 -0.02 1.44 16 6 N -0.70 -8.69 5.37 -60.73 -0.33 -9.01 16 7 C 0.51 8.14 7.73 -11.58 -0.09 8.05 16 8 O -0.51 -9.10 13.24 5.50 0.07 -9.03 16 9 C 0.50 8.97 7.71 -11.58 -0.09 8.88 16 10 O -0.54 -10.15 15.94 5.50 0.09 -10.06 16 11 N -0.56 -10.69 2.98 -173.25 -0.52 -11.21 16 12 C 0.11 1.97 6.44 -3.71 -0.02 1.95 16 13 C -0.12 -2.52 5.31 -26.61 -0.14 -2.67 16 14 C 0.04 1.09 1.93 -91.73 -0.18 0.92 16 15 C -0.51 -14.00 8.48 -34.44 -0.29 -14.29 16 16 H 0.05 1.48 7.76 -52.48 -0.41 1.07 16 17 C 0.06 1.74 5.22 -17.82 -0.09 1.65 16 18 N -0.89 -25.24 12.09 55.43 0.67 -24.57 16 19 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 C -0.12 -2.72 5.21 -26.61 -0.14 -2.86 16 24 C 0.07 1.46 5.91 -3.70 -0.02 1.44 16 25 C -0.12 -0.80 7.24 -25.83 -0.19 -0.99 16 26 C -0.14 -0.80 7.74 -25.83 -0.20 -1.00 16 27 C -0.13 -0.83 7.23 -25.92 -0.19 -1.02 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.42 7.09 -51.93 -0.37 0.05 16 32 H 0.06 0.36 7.32 -51.93 -0.38 -0.02 16 33 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 34 H 0.08 0.97 7.84 -51.93 -0.41 0.57 16 35 H 0.41 4.63 6.80 -40.82 -0.28 4.35 16 36 H 0.08 1.40 7.02 -51.93 -0.36 1.04 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.03 0.93 8.09 -51.93 -0.42 0.51 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.09 2.26 6.83 -51.93 -0.35 1.91 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 45 H 0.12 2.35 4.47 -53.97 -0.24 2.11 16 46 H 0.09 0.56 8.10 -51.93 -0.42 0.14 16 47 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 48 H 0.08 0.40 7.62 -51.93 -0.40 0.01 16 49 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 51 H 0.09 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 401.12 15.07 6.04 6.04 Total: -1.00 -30.69 401.12 -8.48 -39.17 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.66 Total: 3.76 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -0.48 Total: 2.84 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.17 Total: -44.80 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: -0.20 Total: -23.28 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.69 -8.48 -39.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325587686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.543 kcal (2) G-P(sol) polarization free energy of solvation -30.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds