Wall clock time and date at job start Tue Mar 31 2020 21:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42899 * 113.99773 * 2 1 4 4 C 1.53002 * 109.46982 * 180.02562 * 3 2 1 5 5 C 1.53009 * 112.84528 * 306.09279 * 4 3 2 6 6 N 1.46500 * 109.46820 * 302.38442 * 5 4 3 7 7 C 1.34779 * 119.99690 * 184.36535 * 6 5 4 8 8 O 1.21344 * 119.99883 * 359.97438 * 7 6 5 9 9 C 1.49449 * 119.99929 * 180.02562 * 7 6 5 10 10 O 1.21347 * 119.99970 * 354.51123 * 9 7 6 11 11 N 1.34779 * 119.99999 * 174.50609 * 9 7 6 12 12 C 1.46927 * 120.62911 * 168.86437 * 11 9 7 13 13 C 1.53195 * 108.89257 * 126.46318 * 12 11 9 14 14 C 1.53048 * 109.30662 * 54.56698 * 13 12 11 15 15 C 1.50699 * 109.45719 * 178.62866 * 14 13 12 16 16 H 1.08005 * 120.00086 * 5.75492 * 15 14 13 17 17 C 1.37879 * 120.00134 * 185.75336 * 15 14 13 18 18 N 1.31516 * 119.99861 * 7.79254 * 17 15 14 19 19 Si 1.86801 * 119.99979 * 187.79832 * 17 15 14 20 20 H 1.48501 * 109.47186 * 94.98828 * 19 17 15 21 21 H 1.48503 * 109.46672 * 214.98409 * 19 17 15 22 22 H 1.48496 * 109.47378 * 334.98732 * 19 17 15 23 23 C 1.53040 * 109.53726 * 298.63115 * 14 13 12 24 24 C 1.46957 * 120.65414 * 348.68579 * 11 9 7 25 25 C 1.53779 * 113.61562 * 77.28436 * 4 3 2 26 26 C 1.53958 * 87.01812 * 89.23154 * 25 4 3 27 27 C 1.53781 * 87.11176 * 25.36240 * 26 25 4 28 28 H 1.09000 * 109.47666 * 300.00000 * 1 2 3 29 29 H 1.09002 * 109.47312 * 60.00155 * 1 2 3 30 30 H 1.09006 * 109.47419 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47036 * 59.99867 * 3 2 1 32 32 H 1.09001 * 109.46996 * 299.99531 * 3 2 1 33 33 H 1.09001 * 109.46742 * 182.38620 * 5 4 3 34 34 H 1.08995 * 109.47469 * 62.38780 * 5 4 3 35 35 H 0.97000 * 120.00328 * 4.35781 * 6 5 4 36 36 H 1.08997 * 109.58692 * 6.61464 * 12 11 9 37 37 H 1.08997 * 109.58875 * 246.32637 * 12 11 9 38 38 H 1.08994 * 109.50207 * 174.51198 * 13 12 11 39 39 H 1.08997 * 109.50058 * 294.58670 * 13 12 11 40 40 H 1.08995 * 109.46319 * 58.65575 * 14 13 12 41 41 H 0.96992 * 119.99724 * 179.97438 * 18 17 15 42 42 H 1.09004 * 109.49684 * 181.31966 * 23 14 13 43 43 H 1.09003 * 109.50194 * 301.41850 * 23 14 13 44 44 H 1.09008 * 109.46515 * 113.74883 * 24 11 9 45 45 H 1.08996 * 109.71307 * 353.46734 * 24 11 9 46 46 H 1.09001 * 113.61737 * 203.74790 * 25 4 3 47 47 H 1.08994 * 113.61784 * 334.65624 * 25 4 3 48 48 H 1.08997 * 113.53748 * 270.80972 * 26 25 4 49 49 H 1.09004 * 113.74473 * 139.94060 * 26 25 4 50 50 H 1.08992 * 113.61489 * 220.09178 * 27 26 25 51 51 H 1.09000 * 113.69458 * 89.19624 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.0625 0.3095 1.1384 6 7 3.6125 0.8548 2.4215 7 6 4.0304 0.2964 3.5748 8 8 4.7790 -0.6583 3.5502 9 6 3.5709 0.8523 4.8837 10 8 2.9032 1.8651 4.9119 11 7 3.8981 0.2286 6.0329 12 6 3.6693 0.8803 7.3297 13 6 2.8489 -0.0593 8.2191 14 6 3.5560 -1.4135 8.3123 15 6 2.7691 -2.3296 9.2137 16 1 1.8105 -2.0152 9.5993 17 6 3.2729 -3.5693 9.5461 18 7 4.5013 -3.8927 9.2056 19 14 2.2105 -4.7895 10.4798 20 1 1.5500 -5.7083 9.5181 21 1 3.0603 -5.5747 11.4107 22 1 1.1766 -4.0556 11.2530 23 6 3.6575 -2.0349 6.9174 24 6 4.4869 -1.1177 6.0133 25 6 4.1244 0.8271 -1.3754 26 6 4.1930 2.3405 -1.6500 27 6 4.2602 2.5351 -0.1261 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6885 1.8463 0.8899 32 1 1.6885 1.8463 -0.8900 33 1 5.1521 0.2957 1.1115 34 1 3.6832 -0.7057 1.0220 35 1 3.0138 1.6178 2.4411 36 1 3.1224 1.8111 7.1794 37 1 4.6264 1.0917 7.8064 38 1 2.7560 0.3719 9.2158 39 1 1.8572 -0.1952 7.7876 40 1 4.5566 -1.2733 8.7211 41 1 4.8558 -4.7646 9.4397 42 1 4.1402 -3.0097 6.9877 43 1 2.6584 -2.1525 6.4978 44 1 5.5119 -1.0713 6.3815 45 1 4.4818 -1.5065 4.9950 46 1 5.1023 0.3486 -1.3204 47 1 3.4280 0.2959 -2.0241 48 1 3.2863 2.7424 -2.1020 49 1 5.0990 2.6515 -2.1703 50 1 3.6732 3.3807 0.2324 51 1 5.2747 2.5248 0.2725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325587686.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:28 Heat of formation + Delta-G solvation = -109.939597 kcal Electronic energy + Delta-G solvation = -30485.774008 eV Core-core repulsion = 26385.355889 eV Total energy + Delta-G solvation = -4100.418119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.05416 -40.94501 -39.64181 -38.58133 -38.06273 -35.92783 -35.11318 -33.05232 -31.83283 -30.45863 -28.69335 -28.06484 -26.83032 -26.41044 -25.71630 -24.21906 -23.83131 -22.76560 -21.66803 -20.63803 -19.47754 -18.76067 -18.38197 -18.07997 -17.41223 -17.17377 -16.89411 -16.87350 -16.48139 -16.40269 -15.96213 -15.53693 -15.36531 -15.20756 -14.85379 -14.70764 -14.61916 -14.53002 -14.18344 -13.91341 -13.63671 -13.37411 -13.23478 -13.14149 -12.81216 -12.75097 -12.55624 -12.53229 -12.36895 -12.19098 -12.15653 -12.00404 -11.53744 -11.44126 -11.29413 -11.17970 -11.06564 -10.92987 -10.60850 -10.46521 -10.32330 -10.10055 -9.69463 -8.11792 -6.20978 0.30554 1.29478 1.40170 1.42291 1.51583 2.08457 2.43116 2.45485 2.74380 3.18121 3.25539 3.52801 3.61740 3.77333 3.95341 3.98354 4.09024 4.26897 4.29168 4.38227 4.41752 4.45311 4.47335 4.54372 4.56906 4.57899 4.69418 4.74399 4.79786 4.84582 4.87269 4.88330 4.92575 4.93573 5.11550 5.13671 5.16662 5.18456 5.24663 5.32796 5.35244 5.41618 5.51849 5.63088 5.94287 5.97326 6.02479 6.21669 6.26081 6.36470 6.65934 6.89536 6.91708 7.45871 8.95886 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017435 B = 0.002468 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.534468 B =11342.038885 C =11759.801207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.080 3.920 4 C -0.097 4.097 5 C 0.139 3.861 6 N -0.679 5.679 7 C 0.508 3.492 8 O -0.530 6.530 9 C 0.503 3.497 10 O -0.549 6.549 11 N -0.572 5.572 12 C 0.112 3.888 13 C -0.113 4.113 14 C 0.042 3.958 15 C -0.534 4.534 16 H 0.051 0.949 17 C 0.016 3.984 18 N -0.915 5.915 19 Si 0.948 3.052 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.107 4.107 24 C 0.089 3.911 25 C -0.120 4.120 26 C -0.133 4.133 27 C -0.126 4.126 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.415 0.585 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.072 0.928 39 H 0.045 0.955 40 H 0.008 0.992 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.030 0.970 44 H 0.060 0.940 45 H 0.124 0.876 46 H 0.088 0.912 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.080 0.920 50 H 0.079 0.921 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 13.961 -23.678 27.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.003 3.997 4 C -0.098 4.098 5 C 0.016 3.984 6 N -0.332 5.332 7 C 0.289 3.711 8 O -0.408 6.408 9 C 0.286 3.714 10 O -0.428 6.428 11 N -0.304 5.304 12 C -0.009 4.009 13 C -0.151 4.151 14 C 0.024 3.976 15 C -0.572 4.572 16 H 0.069 0.931 17 C -0.183 4.183 18 N -0.554 5.554 19 Si 0.774 3.226 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.193 1.193 23 C -0.146 4.146 24 C -0.032 4.032 25 C -0.158 4.158 26 C -0.170 4.170 27 C -0.163 4.163 28 H 0.060 0.940 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.252 0.748 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.064 0.936 40 H 0.026 0.974 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.079 0.921 45 H 0.141 0.859 46 H 0.107 0.893 47 H 0.091 0.909 48 H 0.108 0.892 49 H 0.098 0.902 50 H 0.097 0.903 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.239 13.507 -23.668 27.343 hybrid contribution -0.881 -0.681 1.045 1.526 sum -3.120 12.826 -22.624 26.193 Atomic orbital electron populations 1.22867 0.79873 1.03456 1.00726 1.87864 1.20892 1.28377 1.95536 1.22355 0.91272 0.84762 1.01264 1.22184 0.94032 0.98013 0.95557 1.21471 0.99378 0.97616 0.79910 1.45681 1.48564 1.34254 1.04666 1.20063 0.81763 0.83529 0.85746 1.90570 1.36482 1.27069 1.86725 1.20227 0.80922 0.84614 0.85655 1.90672 1.38366 1.26375 1.87402 1.48144 1.58830 1.17724 1.05654 1.21853 1.00955 0.96338 0.81764 1.21849 0.98191 0.96294 0.98738 1.18646 0.95132 0.91556 0.92283 1.21523 1.04795 1.01318 1.29548 0.93093 1.25692 0.95779 1.00012 0.96833 1.70055 1.15271 1.21824 1.48282 0.85697 0.79042 0.79292 0.78560 1.20436 1.20923 1.19305 1.21746 0.97441 0.99037 0.96375 1.22657 0.96183 0.80270 1.04083 1.22925 1.01403 0.97667 0.93772 1.22863 1.03241 0.95271 0.95610 1.23002 1.00824 0.94974 0.97500 0.94034 0.92405 0.89339 0.93066 0.90784 0.90541 0.91883 0.74752 0.88668 0.90298 0.90953 0.93595 0.97359 0.92984 0.92277 0.95089 0.92136 0.85930 0.89297 0.90888 0.89207 0.90157 0.90275 0.89256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.63 16 2 O -0.41 -7.72 10.11 -148.98 -1.51 -9.22 16 3 C 0.08 1.13 4.94 71.98 0.36 1.49 16 4 C -0.10 -1.36 0.74 -51.65 -0.04 -1.40 16 5 C 0.14 2.80 4.75 86.38 0.41 3.21 16 6 N -0.68 -16.07 5.37 -464.40 -2.49 -18.56 16 7 C 0.51 15.87 7.73 87.27 0.67 16.55 16 8 O -0.53 -18.88 13.24 -3.23 -0.04 -18.92 16 9 C 0.50 17.42 7.71 87.27 0.67 18.10 16 10 O -0.55 -19.45 15.94 -3.24 -0.05 -19.50 16 11 N -0.57 -21.31 2.98 -820.41 -2.44 -23.75 16 12 C 0.11 4.00 6.44 86.36 0.56 4.55 16 13 C -0.11 -4.63 5.31 30.68 0.16 -4.47 16 14 C 0.04 2.11 1.93 -11.51 -0.02 2.09 16 15 C -0.53 -29.43 8.48 25.60 0.22 -29.22 16 16 H 0.05 2.78 7.76 -2.91 -0.02 2.75 16 17 C 0.02 0.89 5.22 84.65 0.44 1.33 16 18 N -0.92 -53.07 12.09 21.45 0.26 -52.81 16 19 Si 0.95 43.93 29.54 68.60 2.03 45.95 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 22 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 23 C -0.11 -5.11 5.21 30.67 0.16 -4.95 16 24 C 0.09 3.63 5.91 86.36 0.51 4.14 16 25 C -0.12 -1.38 7.24 31.18 0.23 -1.16 16 26 C -0.13 -1.12 7.74 31.18 0.24 -0.88 16 27 C -0.13 -1.34 7.23 31.12 0.22 -1.11 16 28 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.09 1.20 8.14 -2.38 -0.02 1.19 16 31 H 0.05 0.72 7.09 -2.39 -0.02 0.71 16 32 H 0.07 0.77 7.32 -2.39 -0.02 0.76 16 33 H 0.08 1.54 8.13 -2.39 -0.02 1.52 16 34 H 0.06 1.53 7.84 -2.39 -0.02 1.51 16 35 H 0.42 8.74 6.80 -92.71 -0.63 8.11 16 36 H 0.10 3.14 7.02 -2.39 -0.02 3.12 16 37 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.07 2.82 8.14 -2.39 -0.02 2.80 16 39 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.01 0.45 8.09 -2.39 -0.02 0.43 16 41 H 0.26 14.44 8.31 -92.71 -0.77 13.66 16 42 H 0.06 3.15 6.83 -2.39 -0.02 3.13 16 43 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 45 H 0.12 4.94 4.47 -34.70 -0.16 4.79 16 46 H 0.09 1.01 8.10 -2.39 -0.02 0.99 16 47 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 48 H 0.09 0.61 7.62 -2.39 -0.02 0.59 16 49 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 50 H 0.08 0.75 8.10 -2.39 -0.02 0.73 16 51 H 0.09 1.01 8.09 -2.39 -0.02 0.99 16 Total: -1.00 -65.60 401.12 1.94 -63.66 By element: Atomic # 1 Polarization: 23.11 SS G_CDS: 0.15 Total: 23.25 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 6.04 Total: 9.90 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -4.68 Total: -95.13 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -1.60 Total: -47.65 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -65.60 1.94 -63.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325587686.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.275 kcal (2) G-P(sol) polarization free energy of solvation -65.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds