Wall clock time and date at job start Tue Mar 31 2020 21:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34780 * 119.99977 * 2 1 4 4 O 1.21342 * 119.99833 * 183.65367 * 3 2 1 5 5 C 1.49449 * 119.99655 * 3.64812 * 3 2 1 6 6 O 1.21353 * 120.00233 * 354.14641 * 5 3 2 7 7 N 1.34777 * 119.99977 * 174.15043 * 5 3 2 8 8 C 1.47025 * 125.64543 * 359.95223 * 7 5 3 9 9 C 1.54326 * 107.26958 * 181.09683 * 8 7 5 10 10 C 1.55156 * 102.94328 * 22.19502 * 9 8 7 11 11 O 1.42902 * 111.00076 * 82.56990 * 10 9 8 12 12 C 1.50699 * 111.03976 * 206.40809 * 10 9 8 13 13 H 1.08001 * 119.99556 * 356.79310 * 12 10 9 14 14 C 1.37869 * 120.00142 * 176.80046 * 12 10 9 15 15 N 1.31511 * 120.00109 * 359.97438 * 14 12 10 16 16 Si 1.86807 * 119.99980 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47269 * 89.99923 * 16 14 12 18 18 H 1.48500 * 109.47053 * 209.99650 * 16 14 12 19 19 H 1.48496 * 109.46988 * 329.99471 * 16 14 12 20 20 C 1.47424 * 125.65341 * 179.97438 * 7 5 3 21 21 C 1.46496 * 120.00205 * 179.97438 * 2 1 3 22 22 C 1.54246 * 108.89540 * 62.88125 * 21 2 1 23 23 C 1.50477 * 108.52306 * 159.26661 * 22 21 2 24 24 C 1.54066 * 112.49969 * 94.15210 * 23 22 21 25 25 C 1.54062 * 112.81756 * 318.28460 * 24 23 22 26 26 C 1.50482 * 112.49442 * 318.28139 * 25 24 23 27 27 C 1.45544 * 108.89437 * 300.00259 * 21 2 1 28 28 H 1.09000 * 109.47070 * 84.00185 * 1 2 3 29 29 H 1.08999 * 109.46771 * 203.99401 * 1 2 3 30 30 H 1.08991 * 109.47191 * 323.99861 * 1 2 3 31 31 H 1.09000 * 109.88410 * 300.51834 * 8 7 5 32 32 H 1.09002 * 109.87724 * 61.68498 * 8 7 5 33 33 H 1.09000 * 110.72128 * 263.83051 * 9 8 7 34 34 H 1.08999 * 110.71868 * 140.56193 * 9 8 7 35 35 H 0.96703 * 113.99471 * 186.35366 * 11 10 9 36 36 H 0.96999 * 120.00610 * 180.02562 * 15 14 12 37 37 H 1.09006 * 110.36111 * 36.99384 * 20 7 5 38 38 H 1.08997 * 110.45994 * 274.72180 * 20 7 5 39 39 H 1.08998 * 108.87779 * 181.39690 * 21 2 1 40 40 H 1.08998 * 109.62987 * 278.97478 * 22 21 2 41 41 H 1.08999 * 109.62868 * 39.55970 * 22 21 2 42 42 H 1.09001 * 108.87713 * 333.37188 * 23 22 21 43 43 H 1.09002 * 108.87486 * 214.93189 * 23 22 21 44 44 H 1.09003 * 108.81018 * 197.41936 * 24 23 22 45 45 H 1.08996 * 108.72460 * 79.08318 * 24 23 22 46 46 H 1.09003 * 108.87539 * 197.51302 * 25 24 23 47 47 H 1.08997 * 108.80323 * 79.00349 * 25 24 23 48 48 H 1.09000 * 109.63027 * 334.44908 * 26 25 24 49 49 H 1.08992 * 109.78952 * 213.95696 * 26 25 24 50 50 H 1.08996 * 108.89562 * 303.43885 * 27 21 2 51 51 H 1.08999 * 108.90073 * 61.93496 * 27 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3505 1.1683 -0.0670 5 6 1.3939 2.4601 0.0824 6 8 0.1810 2.4652 0.0421 7 7 2.0690 3.6205 0.2013 8 6 3.5315 3.7586 0.2627 9 6 3.8434 5.2611 0.4258 10 6 2.5248 5.8278 1.0152 11 8 2.4698 5.6309 2.4295 12 6 2.3597 7.2852 0.6688 13 1 3.1368 7.8025 0.1259 14 6 1.2167 7.9580 1.0452 15 7 0.2702 7.3279 1.7061 16 14 1.0117 9.7643 0.6152 17 1 0.3491 9.8860 -0.7082 18 1 0.1776 10.4277 1.6492 19 1 2.3454 10.4150 0.5627 20 6 1.4634 4.9616 0.2918 21 6 2.1976 -1.2687 0.0006 22 6 1.8713 -2.0345 -1.2980 23 6 2.9614 -3.0418 -1.5457 24 6 2.6191 -4.4325 -0.9781 25 6 1.9619 -4.3646 0.4137 26 6 2.6151 -3.3473 1.3097 27 6 1.8370 -2.0206 1.1934 28 1 -0.3633 0.1074 -1.0220 29 1 -0.3633 -0.9389 0.4179 30 1 -0.3633 0.8313 0.6040 31 1 3.9206 3.2043 1.1168 32 1 3.9780 3.3852 -0.6589 33 1 4.0613 5.7168 -0.5401 34 1 4.6712 5.4101 1.1191 35 1 1.6250 5.8801 2.8287 36 1 -0.5342 7.8011 1.9706 37 1 0.5432 4.9237 0.8748 38 1 1.2647 5.3579 -0.7040 39 1 3.2668 -1.0585 0.0256 40 1 0.9159 -2.5480 -1.1900 41 1 1.8222 -1.3354 -2.1328 42 1 3.8812 -2.6876 -1.0804 43 1 3.1230 -3.1294 -2.6201 44 1 3.5357 -5.0180 -0.9059 45 1 1.9364 -4.9325 -1.6651 46 1 2.0310 -5.3453 0.8845 47 1 0.9102 -4.1049 0.2933 48 1 3.6482 -3.1943 0.9979 49 1 2.5919 -3.6960 2.3421 50 1 2.0463 -1.4105 2.0720 51 1 0.7695 -2.2390 1.1638 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326513795.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:09:18 Heat of formation + Delta-G solvation = -112.397994 kcal Electronic energy + Delta-G solvation = -31161.568032 eV Core-core repulsion = 27061.043309 eV Total energy + Delta-G solvation = -4100.524723 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.82781 -39.37797 -38.01436 -37.24445 -35.48961 -34.15112 -32.44192 -32.22140 -31.38589 -30.22770 -27.93127 -26.95358 -26.07172 -25.11412 -24.82203 -23.29463 -21.82000 -20.20692 -19.66626 -19.53850 -18.90788 -17.24549 -16.98496 -16.77620 -16.08926 -15.94006 -15.43681 -15.11889 -14.89489 -14.74196 -14.44953 -14.29241 -13.84811 -13.65797 -13.31719 -13.12454 -13.00459 -12.91632 -12.77256 -12.54127 -12.35636 -12.26351 -12.13638 -11.66996 -11.53436 -11.46511 -11.11917 -11.06199 -10.95112 -10.87027 -10.79786 -10.62383 -10.59788 -10.55759 -10.48706 -10.48251 -10.20338 -9.40048 -8.94397 -8.69803 -8.67070 -8.40683 -7.87168 -6.30918 -4.39806 1.82908 2.57379 3.19536 3.27340 3.30445 3.59573 3.77165 4.24668 4.27873 4.48885 4.58311 4.61578 4.81204 4.90106 4.95146 4.97158 5.05284 5.08105 5.22962 5.32202 5.49536 5.49765 5.52856 5.68475 5.69668 5.71656 5.80074 5.85374 5.86044 5.88345 5.90947 5.92610 6.03736 6.06552 6.08276 6.17302 6.18607 6.30392 6.48031 6.51192 6.72671 6.81017 6.86324 7.15286 7.19716 7.29721 7.71690 7.83614 8.00166 8.08151 8.47358 8.64000 9.28713 9.38613 10.76693 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.028949 B = 0.002488 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.985109 B =11252.371469 C =11488.200007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.591 5.591 3 C 0.509 3.491 4 O -0.521 6.521 5 C 0.508 3.492 6 O -0.532 6.532 7 N -0.574 5.574 8 C 0.112 3.888 9 C -0.122 4.122 10 C 0.249 3.751 11 O -0.581 6.581 12 C -0.535 4.535 13 H 0.068 0.932 14 C 0.071 3.929 15 N -0.895 5.895 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.090 3.910 21 C 0.141 3.859 22 C -0.122 4.122 23 C -0.118 4.118 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.111 4.111 27 C -0.132 4.132 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.382 0.618 36 H 0.271 0.729 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.066 0.934 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.049 -20.884 -3.660 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.325 5.325 3 C 0.292 3.708 4 O -0.397 6.397 5 C 0.291 3.709 6 O -0.412 6.412 7 N -0.305 5.305 8 C -0.011 4.011 9 C -0.160 4.160 10 C 0.208 3.792 11 O -0.390 6.390 12 C -0.574 4.574 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.534 5.534 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 C -0.030 4.030 21 C 0.038 3.962 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.154 4.154 25 C -0.157 4.157 26 C -0.149 4.149 27 C -0.170 4.170 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.233 0.767 36 H 0.081 0.919 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.085 0.915 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.458 -21.104 -3.739 21.573 hybrid contribution -0.939 1.084 -0.211 1.449 sum 1.520 -20.020 -3.950 20.463 Atomic orbital electron populations 1.22356 0.78068 1.03903 1.03361 1.47908 1.08097 1.04798 1.71669 1.20423 0.87536 0.85360 0.77439 1.90697 1.13610 1.87085 1.48281 1.19587 0.87194 0.84196 0.79953 1.90616 1.13174 1.86026 1.51412 1.48669 1.08949 1.06585 1.66309 1.22137 0.79547 0.97977 1.01429 1.22717 0.99588 0.92518 1.01148 1.19632 0.88181 0.92048 0.79313 1.86119 1.41821 1.89019 1.22053 1.21472 1.03968 0.94488 1.37444 0.91383 1.25081 0.95209 0.99099 0.93842 1.69647 1.08247 1.37106 1.38365 0.86381 0.78300 0.83904 0.78202 1.20422 1.20992 1.19658 1.23505 1.00135 0.77860 1.01541 1.20138 0.98491 0.82478 0.95052 1.21671 0.99530 0.97733 0.97108 1.21275 0.98842 0.94609 1.00854 1.21923 1.00524 0.96783 0.96185 1.21366 1.00164 0.99078 0.95139 1.21236 0.99899 0.94133 0.99681 1.20879 1.01093 0.96913 0.98112 0.92547 0.91995 0.87238 0.91436 0.91576 0.90372 0.90529 0.76710 0.91946 0.89328 0.91423 0.88311 0.91229 0.91354 0.91730 0.91984 0.92260 0.92353 0.92302 0.92012 0.91304 0.91484 0.91526 0.91401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.93 59.85 0.53 1.36 16 2 N -0.59 -8.30 2.67 -177.77 -0.48 -8.77 16 3 C 0.51 8.95 7.69 -11.58 -0.09 8.86 16 4 O -0.52 -9.74 13.48 5.50 0.07 -9.67 16 5 C 0.51 10.25 7.80 -11.59 -0.09 10.16 16 6 O -0.53 -11.27 13.39 5.49 0.07 -11.20 16 7 N -0.57 -12.21 3.33 -171.01 -0.57 -12.78 16 8 C 0.11 2.19 5.49 -3.06 -0.02 2.17 16 9 C -0.12 -2.50 6.13 -24.90 -0.15 -2.65 16 10 C 0.25 6.01 0.87 -89.62 -0.08 5.94 16 11 O -0.58 -14.83 13.15 -35.23 -0.46 -15.29 16 12 C -0.54 -13.78 8.26 -34.44 -0.28 -14.07 16 13 H 0.07 1.72 7.78 -52.49 -0.41 1.31 16 14 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 15 N -0.89 -23.44 10.72 55.43 0.59 -22.85 16 16 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 17 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 20 C 0.09 2.14 5.50 -2.52 -0.01 2.12 16 21 C 0.14 1.59 2.01 -70.80 -0.14 1.45 16 22 C -0.12 -1.15 4.75 -27.34 -0.13 -1.28 16 23 C -0.12 -0.95 5.31 -27.43 -0.15 -1.09 16 24 C -0.12 -0.79 5.85 -25.62 -0.15 -0.94 16 25 C -0.12 -0.81 5.32 -27.43 -0.15 -0.96 16 26 C -0.11 -0.86 5.61 -27.34 -0.15 -1.01 16 27 C -0.13 -1.26 4.46 -29.60 -0.13 -1.39 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.61 6.35 -51.93 -0.33 0.28 16 30 H 0.11 1.67 5.35 -51.94 -0.28 1.39 16 31 H 0.07 1.33 7.72 -51.93 -0.40 0.93 16 32 H 0.07 1.21 7.58 -51.93 -0.39 0.81 16 33 H 0.08 1.50 8.03 -51.93 -0.42 1.08 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.38 9.95 7.32 45.56 0.33 10.29 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.09 2.30 7.47 -51.93 -0.39 1.91 16 38 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 39 H 0.10 1.29 6.18 -51.93 -0.32 0.97 16 40 H 0.07 0.59 6.97 -51.93 -0.36 0.23 16 41 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 42 H 0.06 0.56 6.63 -51.93 -0.34 0.21 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.06 0.43 6.63 -51.93 -0.34 0.08 16 48 H 0.07 0.55 6.98 -51.93 -0.36 0.19 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.07 0.60 5.84 -51.93 -0.30 0.30 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -28.03 383.32 -8.97 -37.00 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -7.67 Total: 12.26 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: -1.28 Total: 10.39 kcal Atomic # 7 Polarization: -43.95 SS G_CDS: -0.45 Total: -44.40 kcal Atomic # 8 Polarization: -35.84 SS G_CDS: -0.32 Total: -36.15 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.03 -8.97 -37.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326513795.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.401 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds