Wall clock time and date at job start Tue Mar 31 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.42898 * 113.99973 * 2 1 4 4 C 1.53004 * 109.47314 * 180.02562 * 3 2 1 5 5 C 1.53041 * 109.46033 * 185.00286 * 4 3 2 6 6 C 1.53191 * 109.31047 * 178.61350 * 5 4 3 7 7 N 1.46929 * 108.77726 * 54.63718 * 6 5 4 8 8 C 1.34769 * 120.63310 * 126.36396 * 7 6 5 9 9 O 1.21347 * 120.00211 * 4.84908 * 8 7 6 10 10 C 1.49447 * 120.00153 * 185.11696 * 8 7 6 11 11 O 1.21347 * 120.00447 * 274.61371 * 10 8 7 12 12 N 1.34778 * 119.99585 * 94.60998 * 10 8 7 13 13 C 1.46926 * 120.63210 * 5.14821 * 12 10 8 14 14 C 1.53197 * 108.77458 * 126.37298 * 13 12 10 15 15 C 1.53032 * 109.31440 * 54.63502 * 14 13 12 16 16 C 1.53046 * 109.53819 * 298.63442 * 15 14 13 17 17 H 1.09000 * 109.49874 * 301.37991 * 16 15 14 18 18 C 1.50702 * 109.49870 * 181.31888 * 16 15 14 19 19 H 1.08003 * 119.99919 * 359.97438 * 18 16 15 20 20 C 1.37871 * 120.00041 * 180.02562 * 18 16 15 21 21 N 1.31519 * 120.00046 * 180.02562 * 20 18 16 22 22 Si 1.86798 * 120.00203 * 359.97438 * 20 18 16 23 23 H 1.48507 * 109.47233 * 90.00033 * 22 20 18 24 24 H 1.48500 * 109.47497 * 210.00221 * 22 20 18 25 25 H 1.48500 * 109.47089 * 330.00130 * 22 20 18 26 26 C 1.46929 * 120.63017 * 184.87249 * 12 10 8 27 27 C 1.46924 * 118.73508 * 306.64237 * 7 6 5 28 28 C 1.52761 * 109.00935 * 53.30935 * 27 7 6 29 29 H 1.09002 * 109.47498 * 59.99784 * 1 2 3 30 30 H 1.09002 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47213 * 299.99600 * 1 2 3 32 32 H 1.09005 * 109.47143 * 60.00455 * 3 2 1 33 33 H 1.08998 * 109.47662 * 300.00516 * 3 2 1 34 34 H 1.08998 * 109.46022 * 304.97558 * 4 3 2 35 35 H 1.09000 * 109.49705 * 58.66355 * 5 4 3 36 36 H 1.08991 * 109.49716 * 298.56530 * 5 4 3 37 37 H 1.09001 * 109.58925 * 294.84929 * 6 5 4 38 38 H 1.09000 * 109.58578 * 174.42328 * 6 5 4 39 39 H 1.09002 * 109.58754 * 246.15675 * 13 12 10 40 40 H 1.09000 * 109.58657 * 6.44151 * 13 12 10 41 41 H 1.08995 * 109.49592 * 174.59026 * 14 13 12 42 42 H 1.09004 * 109.49303 * 294.68362 * 14 13 12 43 43 H 1.08996 * 109.46378 * 58.65317 * 15 14 13 44 44 H 1.08999 * 109.46206 * 178.62954 * 15 14 13 45 45 H 0.97001 * 120.00040 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58387 * 353.41270 * 26 12 10 47 47 H 1.08995 * 109.58870 * 113.84368 * 26 12 10 48 48 H 1.08996 * 109.58620 * 173.14538 * 27 7 6 49 49 H 1.09007 * 109.58755 * 293.56900 * 27 7 6 50 50 H 1.09002 * 109.56477 * 185.55507 * 28 27 7 51 51 H 1.08998 * 109.38795 * 65.51692 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1572 2.5774 0.1252 6 6 5.6834 2.4497 0.1591 7 7 6.1214 1.6980 -1.0250 8 6 7.0574 2.2041 -1.8521 9 8 7.6103 3.2484 -1.5761 10 6 7.4102 1.4822 -3.1122 11 8 8.2387 0.5958 -3.0921 12 7 6.8080 1.8156 -4.2709 13 6 5.8873 2.9589 -4.3342 14 6 6.3445 3.8986 -5.4544 15 6 6.4586 3.1105 -6.7612 16 6 7.5042 2.0042 -6.6021 17 1 8.4644 2.4466 -6.3370 18 6 7.6392 1.2493 -7.8994 19 1 7.0391 1.5299 -8.7524 20 6 8.5280 0.1999 -7.9970 21 7 8.6462 -0.4586 -9.1293 22 14 9.5654 -0.2859 -6.5215 23 1 8.8385 -1.3015 -5.7180 24 1 10.8551 -0.8548 -6.9887 25 1 9.8274 0.9125 -5.6845 26 6 7.0645 1.0464 -5.4962 27 6 5.5152 0.3869 -1.2935 28 6 3.9949 0.5353 -1.3080 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6885 1.8464 0.8901 33 1 1.6885 1.8465 -0.8899 34 1 3.8512 0.5686 0.8412 35 1 3.8110 3.0486 1.0451 36 1 3.8619 3.1862 -0.7293 37 1 5.9857 1.9184 1.0616 38 1 6.1334 3.4424 0.1488 39 1 4.8782 2.6042 -4.5439 40 1 5.8977 3.4896 -3.3822 41 1 5.6168 4.7009 -5.5758 42 1 7.3156 4.3231 -5.1995 43 1 5.4933 2.6657 -7.0026 44 1 6.7602 3.7820 -7.5651 45 1 9.2713 -1.1972 -9.1979 46 1 7.8532 0.3171 -5.3115 47 1 6.1533 0.5327 -5.8026 48 1 5.8543 0.0190 -2.2618 49 1 5.8035 -0.3160 -0.5118 50 1 3.5332 -0.4470 -1.4082 51 1 3.7006 1.1630 -2.1492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327335161.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:58 Heat of formation + Delta-G solvation = -115.579813 kcal Electronic energy + Delta-G solvation = -31484.292935 eV Core-core repulsion = 27383.630238 eV Total energy + Delta-G solvation = -4100.662697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.99581 -39.38364 -38.44836 -37.27218 -37.02688 -33.76817 -33.47805 -32.05211 -31.53997 -30.65106 -28.64458 -26.79830 -25.81979 -25.27779 -23.80076 -23.70261 -22.18992 -22.03737 -20.59589 -19.50144 -18.62320 -17.76473 -16.94684 -16.78170 -16.70234 -16.29502 -16.21559 -15.56147 -15.21952 -14.88723 -14.70999 -14.33073 -14.21958 -14.05401 -14.02053 -13.57602 -13.37061 -13.27366 -13.11479 -12.95334 -12.73736 -12.55031 -12.35373 -12.25414 -11.89766 -11.63227 -11.40745 -11.25839 -11.19470 -11.10898 -10.88922 -10.88368 -10.61933 -10.46621 -10.15546 -10.04856 -9.79351 -9.50712 -9.23505 -9.10407 -8.98787 -8.65063 -8.25845 -6.13221 -4.15174 2.14619 2.27434 2.73558 3.32938 3.35022 3.40976 3.48385 3.57383 4.19727 4.28722 4.39527 4.40242 4.57269 4.71028 4.83370 4.92051 4.95344 4.97540 5.00858 5.05516 5.14020 5.18488 5.20735 5.27193 5.29521 5.41585 5.43979 5.49225 5.50040 5.54932 5.62269 5.70619 5.79029 5.95521 5.99216 6.02811 6.08134 6.20116 6.34841 6.41736 6.54423 6.66615 6.71149 6.75912 6.96341 7.09480 7.38158 7.54769 7.66924 7.75359 8.11655 8.45373 8.89828 9.48127 10.98578 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.003331 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.828890 B = 8403.916698 C = 8800.610757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.087 4.087 5 C -0.127 4.127 6 C 0.113 3.887 7 N -0.599 5.599 8 C 0.522 3.478 9 O -0.517 6.517 10 C 0.507 3.493 11 O -0.520 6.520 12 N -0.587 5.587 13 C 0.109 3.891 14 C -0.136 4.136 15 C -0.100 4.100 16 C 0.003 3.997 17 H 0.032 0.968 18 C -0.516 4.516 19 H 0.079 0.921 20 C 0.074 3.926 21 N -0.894 5.894 22 Si 0.875 3.125 23 H -0.273 1.273 24 H -0.294 1.294 25 H -0.261 1.261 26 C 0.101 3.899 27 C 0.105 3.895 28 C -0.126 4.126 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.058 0.942 44 H 0.062 0.938 45 H 0.266 0.734 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.041 5.257 20.633 27.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.010 4.010 4 C -0.105 4.105 5 C -0.165 4.165 6 C -0.009 4.009 7 N -0.335 5.335 8 C 0.305 3.695 9 O -0.391 6.391 10 C 0.288 3.712 11 O -0.395 6.395 12 N -0.321 5.321 13 C -0.014 4.014 14 C -0.174 4.174 15 C -0.138 4.138 16 C -0.017 4.017 17 H 0.050 0.950 18 C -0.554 4.554 19 H 0.097 0.903 20 C -0.129 4.129 21 N -0.532 5.532 22 Si 0.705 3.295 23 H -0.199 1.199 24 H -0.221 1.221 25 H -0.186 1.186 26 C -0.019 4.019 27 C -0.017 4.017 28 C -0.164 4.164 29 H 0.060 0.940 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.105 0.895 49 H 0.095 0.905 50 H 0.106 0.894 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.078 5.028 20.671 26.666 hybrid contribution 0.353 -0.221 0.766 0.872 sum -15.726 4.807 21.438 27.018 Atomic orbital electron populations 1.22737 0.80987 1.02839 0.99919 1.87877 1.19667 1.27884 1.95395 1.22578 0.93436 0.84764 1.00253 1.21150 0.92998 0.97056 0.99311 1.21915 0.94912 0.96514 1.03201 1.21638 0.93987 0.98252 0.87062 1.48125 1.39072 1.20390 1.25934 1.20532 0.79271 0.84874 0.84793 1.90768 1.50963 1.22498 1.74908 1.20117 0.82678 0.83763 0.84614 1.90812 1.32196 1.30941 1.85571 1.48511 1.43547 1.30895 1.09172 1.21764 0.92840 0.86952 0.99835 1.21975 1.01680 0.97604 0.96138 1.21446 0.99956 0.97496 0.94855 1.19435 0.95119 0.93103 0.94002 0.94960 1.20926 1.23446 1.15107 0.95898 0.90315 1.25036 0.96263 0.95903 0.95687 1.69886 1.36642 1.21455 1.25184 0.87048 0.79979 0.80098 0.82418 1.19941 1.22096 1.18614 1.22708 1.01755 0.95618 0.81795 1.21768 0.93402 0.83593 1.02986 1.21861 0.94413 1.02724 0.97396 0.94008 0.89585 0.94209 0.93248 0.93104 0.89882 0.90165 0.90930 0.90930 0.88489 0.90984 0.90987 0.91332 0.91654 0.92370 0.91936 0.92445 0.90179 0.90705 0.89451 0.90456 0.89354 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.32 10.21 -35.23 -0.36 -3.68 16 3 C 0.07 0.45 5.32 37.16 0.20 0.65 16 4 C -0.09 -0.62 2.39 -90.58 -0.22 -0.84 16 5 C -0.13 -0.85 5.36 -26.61 -0.14 -0.99 16 6 C 0.11 1.03 6.42 -3.71 -0.02 1.01 16 7 N -0.60 -7.42 2.98 -173.54 -0.52 -7.93 16 8 C 0.52 8.69 5.61 -11.59 -0.07 8.63 16 9 O -0.52 -9.68 16.32 5.50 0.09 -9.59 16 10 C 0.51 9.94 5.48 -11.59 -0.06 9.88 16 11 O -0.52 -12.07 16.49 5.50 0.09 -11.98 16 12 N -0.59 -11.00 2.98 -173.53 -0.52 -11.52 16 13 C 0.11 1.60 6.33 -3.71 -0.02 1.58 16 14 C -0.14 -2.07 6.08 -26.61 -0.16 -2.23 16 15 C -0.10 -1.85 5.11 -26.69 -0.14 -1.98 16 16 C 0.00 0.07 1.83 -91.87 -0.17 -0.10 16 17 H 0.03 0.81 7.20 -51.93 -0.37 0.44 16 18 C -0.52 -14.09 9.15 -34.44 -0.31 -14.40 16 19 H 0.08 2.29 7.99 -52.48 -0.42 1.87 16 20 C 0.07 2.13 5.45 -17.82 -0.10 2.04 16 21 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 22 Si 0.88 23.13 24.32 -169.99 -4.13 19.00 16 23 H -0.27 -7.15 6.92 56.52 0.39 -6.76 16 24 H -0.29 -7.74 7.11 56.52 0.40 -7.34 16 25 H -0.26 -7.04 6.53 56.52 0.37 -6.67 16 26 C 0.10 2.21 5.10 -3.93 -0.02 2.19 16 27 C 0.11 1.15 6.33 -3.93 -0.02 1.13 16 28 C -0.13 -1.10 5.26 -26.83 -0.14 -1.24 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.10 0.99 7.03 -51.93 -0.37 0.62 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.07 0.99 6.22 -51.93 -0.32 0.67 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.08 1.98 2.31 -51.93 -0.12 1.86 16 47 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 48 H 0.09 1.15 6.30 -51.93 -0.33 0.83 16 49 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.09 0.79 7.79 -51.93 -0.40 0.38 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 LS Contribution 391.58 15.07 5.90 5.90 Total: -1.00 -34.45 391.58 -7.66 -42.11 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.70 Total: -2.53 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.29 Total: 6.61 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: -0.26 Total: -45.83 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.18 Total: -25.26 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.13 Total: 19.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.45 -7.66 -42.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327335161.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.473 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds