Wall clock time and date at job start Tue Mar 31 2020 21:34:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.52994 * 109.47442 * 180.02562 * 3 2 1 5 5 C 1.53044 * 109.46152 * 184.99935 * 4 3 2 6 6 C 1.53198 * 109.31097 * 178.62581 * 5 4 3 7 7 N 1.46923 * 108.77569 * 54.63695 * 6 5 4 8 8 C 1.34772 * 120.63098 * 126.36358 * 7 6 5 9 9 O 1.21351 * 119.99962 * 5.05617 * 8 7 6 10 10 C 1.49454 * 120.00245 * 185.05095 * 8 7 6 11 11 O 1.21356 * 119.99618 * 85.48995 * 10 8 7 12 12 N 1.34772 * 120.00237 * 265.49600 * 10 8 7 13 13 C 1.46927 * 120.63124 * 354.93909 * 12 10 8 14 14 C 1.53189 * 108.77695 * 233.59212 * 13 12 10 15 15 C 1.53039 * 109.31498 * 305.36386 * 14 13 12 16 16 C 1.53041 * 109.53652 * 61.36332 * 15 14 13 17 17 H 1.09003 * 109.49723 * 58.58802 * 16 15 14 18 18 C 1.50698 * 109.52520 * 178.66743 * 16 15 14 19 19 H 1.07996 * 120.00001 * 359.85396 * 18 16 15 20 20 C 1.37883 * 120.00070 * 179.85628 * 18 16 15 21 21 N 1.31514 * 119.99655 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00036 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47151 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46902 * 120.00156 * 22 20 18 25 25 H 1.48501 * 109.47394 * 240.00122 * 22 20 18 26 26 C 1.46931 * 120.63133 * 174.92461 * 12 10 8 27 27 C 1.46930 * 118.73799 * 306.64223 * 7 6 5 28 28 C 1.52760 * 109.00900 * 53.31007 * 27 7 6 29 29 H 1.08998 * 109.47447 * 299.99866 * 1 2 3 30 30 H 1.08997 * 109.47661 * 60.00342 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47272 * 59.99761 * 3 2 1 33 33 H 1.09000 * 109.47039 * 300.00402 * 3 2 1 34 34 H 1.09000 * 109.46015 * 304.97527 * 4 3 2 35 35 H 1.08999 * 109.49296 * 58.67336 * 5 4 3 36 36 H 1.09000 * 109.49327 * 298.57993 * 5 4 3 37 37 H 1.08995 * 109.58418 * 294.84660 * 6 5 4 38 38 H 1.09005 * 109.69795 * 174.48912 * 6 5 4 39 39 H 1.08997 * 109.58855 * 353.38388 * 13 12 10 40 40 H 1.09001 * 109.58268 * 113.80060 * 13 12 10 41 41 H 1.08994 * 109.49990 * 65.32043 * 14 13 12 42 42 H 1.09000 * 109.49316 * 185.41487 * 14 13 12 43 43 H 1.09000 * 109.45923 * 301.35065 * 15 14 13 44 44 H 1.08995 * 109.45196 * 181.38147 * 15 14 13 45 45 H 0.97002 * 119.99364 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58834 * 246.19705 * 26 12 10 47 47 H 1.09005 * 109.58232 * 6.62464 * 26 12 10 48 48 H 1.08995 * 109.58543 * 173.14787 * 27 7 6 49 49 H 1.09004 * 109.58245 * 293.56702 * 27 7 6 50 50 H 1.08997 * 109.56173 * 185.55649 * 28 27 7 51 51 H 1.08993 * 109.38865 * 65.51575 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1571 2.5776 0.1251 6 6 5.6834 2.4498 0.1587 7 7 6.1212 1.6983 -1.0254 8 6 7.0570 2.2044 -1.8527 9 8 7.6126 3.2469 -1.5749 10 6 7.4106 1.4818 -3.1123 11 8 6.7572 1.6618 -4.1189 12 7 8.4551 0.6303 -3.1301 13 6 9.3224 0.4846 -1.9531 14 6 10.7763 0.7069 -2.3815 15 6 11.1154 -0.2420 -3.5333 16 6 10.2082 0.0592 -4.7285 17 1 10.3425 1.0967 -5.0347 18 6 10.5643 -0.8533 -5.8737 19 1 11.3601 -1.5748 -5.7619 20 6 9.8742 -0.7670 -7.0643 21 7 8.9056 0.1121 -7.2006 22 14 10.3161 -1.8976 -8.4840 23 1 11.4332 -2.7881 -8.0785 24 1 9.1346 -2.7205 -8.8476 25 1 10.7314 -1.0834 -9.6545 26 6 8.7479 -0.1704 -4.3268 27 6 5.5149 0.3871 -1.2939 28 6 3.9946 0.5354 -1.3082 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8512 0.5687 0.8412 35 1 3.8111 3.0487 1.0451 36 1 3.8616 3.1863 -0.7294 37 1 5.9858 1.9187 1.0611 38 1 6.1354 3.4417 0.1496 39 1 9.0458 1.2240 -1.2016 40 1 9.2123 -0.5181 -1.5400 41 1 10.9053 1.7382 -2.7097 42 1 11.4383 0.5073 -1.5388 43 1 10.9624 -1.2723 -3.2120 44 1 12.1567 -0.1030 -3.8236 45 1 8.4199 0.1725 -8.0380 46 1 8.5910 -1.2264 -4.1074 47 1 8.0921 0.1371 -5.1415 48 1 5.8539 0.0192 -2.2623 49 1 5.8035 -0.3158 -0.5123 50 1 3.5330 -0.4469 -1.4082 51 1 3.7002 1.1631 -2.1491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327335162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:02 Heat of formation + Delta-G solvation = -123.624691 kcal Electronic energy + Delta-G solvation = -31008.512192 eV Core-core repulsion = 26907.500643 eV Total energy + Delta-G solvation = -4101.011549 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.75119 -39.15159 -38.25060 -37.10747 -36.71315 -33.64418 -33.38479 -31.86080 -31.39269 -29.87401 -28.52112 -26.66418 -25.64857 -25.05662 -23.64833 -23.58246 -22.02918 -21.82773 -20.50264 -19.37199 -18.36570 -17.58218 -16.75807 -16.52941 -16.25972 -16.18441 -15.94483 -15.47223 -14.93479 -14.68157 -14.52102 -14.33544 -14.14056 -13.86276 -13.73061 -13.34088 -13.23264 -13.14630 -12.88025 -12.65428 -12.58412 -12.28675 -12.18112 -11.95039 -11.82471 -11.48688 -11.10184 -11.04264 -11.01832 -10.93315 -10.76939 -10.74445 -10.50598 -10.39906 -10.26126 -9.97612 -9.94281 -9.24036 -9.15976 -8.86978 -8.83073 -8.46941 -7.90419 -6.01499 -4.10529 2.40286 2.50014 3.00810 3.29528 3.37944 3.40479 3.40870 3.71812 4.39994 4.40569 4.43806 4.53339 4.70753 4.83994 4.91655 4.99599 5.05811 5.07035 5.10412 5.23948 5.26750 5.29436 5.30732 5.34697 5.46908 5.53317 5.59921 5.60933 5.64110 5.68662 5.75471 5.91727 5.94977 6.13217 6.16612 6.28996 6.34581 6.55414 6.62567 6.80471 6.82838 6.94017 7.02027 7.11814 7.14540 7.57305 7.82455 7.91420 7.94889 8.06831 8.32786 8.51910 8.93899 9.55327 11.03803 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002918 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.709435 B = 9592.263851 C =10799.229428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.085 4.085 5 C -0.129 4.129 6 C 0.113 3.887 7 N -0.600 5.600 8 C 0.519 3.481 9 O -0.521 6.521 10 C 0.506 3.494 11 O -0.509 6.509 12 N -0.588 5.588 13 C 0.108 3.892 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.038 3.962 17 H 0.031 0.969 18 C -0.519 4.519 19 H 0.060 0.940 20 C 0.062 3.938 21 N -0.880 5.880 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.111 3.889 27 C 0.107 3.893 28 C -0.127 4.127 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.051 0.949 44 H 0.053 0.947 45 H 0.263 0.737 46 H 0.050 0.950 47 H 0.125 0.875 48 H 0.089 0.911 49 H 0.076 0.924 50 H 0.086 0.914 51 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.856 0.432 18.994 22.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.104 4.104 5 C -0.167 4.167 6 C -0.009 4.009 7 N -0.336 5.336 8 C 0.303 3.697 9 O -0.396 6.396 10 C 0.287 3.713 11 O -0.384 6.384 12 N -0.322 5.322 13 C -0.016 4.016 14 C -0.171 4.171 15 C -0.148 4.148 16 C 0.019 3.981 17 H 0.049 0.951 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.517 5.517 22 Si 0.721 3.279 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.009 4.009 27 C -0.016 4.016 28 C -0.165 4.165 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.143 0.857 48 H 0.107 0.893 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.913 0.987 18.438 22.531 hybrid contribution -0.113 -0.308 -0.771 0.838 sum -13.026 0.679 17.666 21.960 Atomic orbital electron populations 1.22730 0.81089 1.02774 0.99888 1.87876 1.19587 1.27952 1.95393 1.22587 0.93569 0.84687 1.00213 1.21143 0.92890 0.97065 0.99310 1.21923 0.95180 0.96525 1.03077 1.21605 0.93939 0.98328 0.87064 1.48158 1.40004 1.20116 1.25358 1.20813 0.79433 0.85894 0.83572 1.90750 1.52218 1.23505 1.73097 1.19968 0.82483 0.80356 0.88457 1.90837 1.52372 1.62074 1.33086 1.48618 1.26696 1.39938 1.16905 1.21704 0.91521 1.01037 0.87326 1.21927 0.94443 1.01399 0.99327 1.21633 1.00313 0.97399 0.95454 1.18992 0.89408 0.98044 0.91658 0.95101 1.21101 1.18343 1.19732 0.96626 0.92192 1.25072 0.95017 0.95399 0.98620 1.69896 1.21674 1.34171 1.26009 0.86524 0.78323 0.80687 0.82402 1.19784 1.20966 1.21012 1.22461 1.02160 0.91625 0.84643 1.21739 0.93550 0.83546 1.02769 1.21849 0.94656 1.02608 0.97395 0.94244 0.94053 0.89616 0.93278 0.93134 0.89920 0.90323 0.90985 0.90943 0.88595 0.91388 0.91459 0.91825 0.91951 0.93053 0.92781 0.92649 0.93200 0.85747 0.89312 0.90595 0.89506 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.68 10.21 -35.23 -0.36 -4.04 16 3 C 0.07 0.53 5.32 37.15 0.20 0.73 16 4 C -0.09 -0.73 2.39 -90.58 -0.22 -0.94 16 5 C -0.13 -1.07 5.36 -26.61 -0.14 -1.21 16 6 C 0.11 1.16 6.42 -3.71 -0.02 1.13 16 7 N -0.60 -8.08 2.98 -173.53 -0.52 -8.59 16 8 C 0.52 9.30 5.60 -11.59 -0.06 9.23 16 9 O -0.52 -10.45 16.33 5.50 0.09 -10.36 16 10 C 0.51 10.63 5.47 -11.59 -0.06 10.57 16 11 O -0.51 -12.62 16.52 5.49 0.09 -12.52 16 12 N -0.59 -11.87 2.97 -173.27 -0.51 -12.39 16 13 C 0.11 1.76 6.32 -3.71 -0.02 1.74 16 14 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 15 C -0.11 -2.18 5.11 -26.69 -0.14 -2.31 16 16 C 0.04 0.93 2.25 -91.65 -0.21 0.73 16 17 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 18 C -0.52 -13.86 8.57 -34.44 -0.29 -14.16 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.45 11.39 55.43 0.63 -24.81 16 22 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 23 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.11 2.61 5.41 -3.71 -0.02 2.59 16 27 C 0.11 1.26 6.33 -3.93 -0.02 1.24 16 28 C -0.13 -1.33 5.25 -26.83 -0.14 -1.47 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.10 1.10 7.03 -51.93 -0.37 0.73 16 39 H 0.07 1.05 6.23 -51.93 -0.32 0.73 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 47 H 0.12 3.44 5.11 -51.93 -0.27 3.17 16 48 H 0.09 1.27 6.31 -51.93 -0.33 0.94 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.89 7.79 -51.93 -0.40 0.48 16 51 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -32.78 398.54 -8.74 -41.52 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -8.84 Total: 0.81 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -0.30 Total: 8.37 kcal Atomic # 7 Polarization: -45.39 SS G_CDS: -0.40 Total: -45.79 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.18 Total: -26.93 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.78 -8.74 -41.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327335162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.104 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds