Wall clock time and date at job start Tue Mar 31 2020 21:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99958 * 2 1 4 4 C 1.52994 * 109.47442 * 180.02562 * 3 2 1 5 5 C 1.53044 * 109.46152 * 184.99935 * 4 3 2 6 6 C 1.53198 * 109.31097 * 178.62581 * 5 4 3 7 7 N 1.46923 * 108.77569 * 54.63695 * 6 5 4 8 8 C 1.34772 * 120.63098 * 126.36358 * 7 6 5 9 9 O 1.21351 * 119.99962 * 5.05617 * 8 7 6 10 10 C 1.49454 * 120.00245 * 185.05095 * 8 7 6 11 11 O 1.21356 * 119.99618 * 85.48995 * 10 8 7 12 12 N 1.34772 * 120.00237 * 265.49600 * 10 8 7 13 13 C 1.46927 * 120.63124 * 354.93909 * 12 10 8 14 14 C 1.53189 * 108.77695 * 233.59212 * 13 12 10 15 15 C 1.53039 * 109.31498 * 305.36386 * 14 13 12 16 16 C 1.53041 * 109.53652 * 61.36332 * 15 14 13 17 17 H 1.09003 * 109.49723 * 58.58802 * 16 15 14 18 18 C 1.50698 * 109.52520 * 178.66743 * 16 15 14 19 19 H 1.07996 * 120.00001 * 359.85396 * 18 16 15 20 20 C 1.37883 * 120.00070 * 179.85628 * 18 16 15 21 21 N 1.31514 * 119.99655 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00036 * 179.97438 * 20 18 16 23 23 H 1.48506 * 109.47151 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.46902 * 120.00156 * 22 20 18 25 25 H 1.48501 * 109.47394 * 240.00122 * 22 20 18 26 26 C 1.46931 * 120.63133 * 174.92461 * 12 10 8 27 27 C 1.46930 * 118.73799 * 306.64223 * 7 6 5 28 28 C 1.52760 * 109.00900 * 53.31007 * 27 7 6 29 29 H 1.08998 * 109.47447 * 299.99866 * 1 2 3 30 30 H 1.08997 * 109.47661 * 60.00342 * 1 2 3 31 31 H 1.09002 * 109.46892 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47272 * 59.99761 * 3 2 1 33 33 H 1.09000 * 109.47039 * 300.00402 * 3 2 1 34 34 H 1.09000 * 109.46015 * 304.97527 * 4 3 2 35 35 H 1.08999 * 109.49296 * 58.67336 * 5 4 3 36 36 H 1.09000 * 109.49327 * 298.57993 * 5 4 3 37 37 H 1.08995 * 109.58418 * 294.84660 * 6 5 4 38 38 H 1.09005 * 109.69795 * 174.48912 * 6 5 4 39 39 H 1.08997 * 109.58855 * 353.38388 * 13 12 10 40 40 H 1.09001 * 109.58268 * 113.80060 * 13 12 10 41 41 H 1.08994 * 109.49990 * 65.32043 * 14 13 12 42 42 H 1.09000 * 109.49316 * 185.41487 * 14 13 12 43 43 H 1.09000 * 109.45923 * 301.35065 * 15 14 13 44 44 H 1.08995 * 109.45196 * 181.38147 * 15 14 13 45 45 H 0.97002 * 119.99364 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.58834 * 246.19705 * 26 12 10 47 47 H 1.09005 * 109.58232 * 6.62464 * 26 12 10 48 48 H 1.08995 * 109.58543 * 173.14787 * 27 7 6 49 49 H 1.09004 * 109.58245 * 293.56702 * 27 7 6 50 50 H 1.08997 * 109.56173 * 185.55649 * 28 27 7 51 51 H 1.08993 * 109.38865 * 65.51575 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 -0.0006 5 6 4.1571 2.5776 0.1251 6 6 5.6834 2.4498 0.1587 7 7 6.1212 1.6983 -1.0254 8 6 7.0570 2.2044 -1.8527 9 8 7.6126 3.2469 -1.5749 10 6 7.4106 1.4818 -3.1123 11 8 6.7572 1.6618 -4.1189 12 7 8.4551 0.6303 -3.1301 13 6 9.3224 0.4846 -1.9531 14 6 10.7763 0.7069 -2.3815 15 6 11.1154 -0.2420 -3.5333 16 6 10.2082 0.0592 -4.7285 17 1 10.3425 1.0967 -5.0347 18 6 10.5643 -0.8533 -5.8737 19 1 11.3601 -1.5748 -5.7619 20 6 9.8742 -0.7670 -7.0643 21 7 8.9056 0.1121 -7.2006 22 14 10.3161 -1.8976 -8.4840 23 1 11.4332 -2.7881 -8.0785 24 1 9.1346 -2.7205 -8.8476 25 1 10.7314 -1.0834 -9.6545 26 6 8.7479 -0.1704 -4.3268 27 6 5.5149 0.3871 -1.2939 28 6 3.9946 0.5354 -1.3082 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6885 1.8465 0.8900 33 1 1.6885 1.8464 -0.8899 34 1 3.8512 0.5687 0.8412 35 1 3.8111 3.0487 1.0451 36 1 3.8616 3.1863 -0.7294 37 1 5.9858 1.9187 1.0611 38 1 6.1354 3.4417 0.1496 39 1 9.0458 1.2240 -1.2016 40 1 9.2123 -0.5181 -1.5400 41 1 10.9053 1.7382 -2.7097 42 1 11.4383 0.5073 -1.5388 43 1 10.9624 -1.2723 -3.2120 44 1 12.1567 -0.1030 -3.8236 45 1 8.4199 0.1725 -8.0380 46 1 8.5910 -1.2264 -4.1074 47 1 8.0921 0.1371 -5.1415 48 1 5.8539 0.0192 -2.2623 49 1 5.8035 -0.3158 -0.5123 50 1 3.5330 -0.4469 -1.4082 51 1 3.7002 1.1631 -2.1491 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327335162.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:00 Heat of formation + Delta-G solvation = -145.373537 kcal Electronic energy + Delta-G solvation = -31009.455293 eV Core-core repulsion = 26907.500643 eV Total energy + Delta-G solvation = -4101.954650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.13758 -40.37688 -39.32041 -38.44436 -38.04661 -35.34871 -34.57723 -33.56685 -32.27385 -31.65803 -29.38556 -27.79362 -27.00324 -26.62327 -24.85249 -24.48954 -23.56934 -23.07524 -21.60896 -20.78381 -19.70315 -19.09805 -18.23729 -18.00632 -17.57361 -17.24793 -16.75961 -16.56840 -16.17439 -16.05040 -15.87523 -15.75902 -15.29549 -15.13076 -15.01381 -14.67239 -14.52348 -14.38923 -14.13889 -14.01958 -13.96275 -13.60815 -13.45412 -12.94475 -12.91522 -12.74330 -12.60068 -12.40256 -12.31700 -12.25064 -12.23180 -11.86872 -11.80806 -11.68858 -11.56691 -11.52916 -11.11401 -10.98202 -10.59077 -10.57018 -10.52042 -9.93103 -9.62247 -8.11107 -6.28480 0.96617 1.09736 1.39948 1.42736 1.46653 1.54911 2.31844 2.43172 2.83233 3.09567 3.18053 3.63657 3.72110 3.91349 3.92294 4.04451 4.07725 4.18074 4.25660 4.29950 4.42138 4.44696 4.51040 4.52358 4.57614 4.63937 4.66585 4.71417 4.73943 4.77337 4.80408 4.86813 4.87578 4.89915 4.99325 5.04139 5.10906 5.16716 5.22037 5.28794 5.35622 5.39474 5.42737 5.58488 5.85791 5.90796 5.95275 6.26340 6.27609 6.32739 6.61713 6.81063 6.88668 7.42073 8.92753 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014241 B = 0.002918 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.709435 B = 9592.263851 C =10799.229428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.066 3.934 4 C -0.079 4.079 5 C -0.122 4.122 6 C 0.107 3.893 7 N -0.584 5.584 8 C 0.526 3.474 9 O -0.549 6.549 10 C 0.498 3.502 11 O -0.563 6.563 12 N -0.586 5.586 13 C 0.104 3.896 14 C -0.127 4.127 15 C -0.103 4.103 16 C 0.034 3.966 17 H -0.020 1.020 18 C -0.531 4.531 19 H 0.067 0.933 20 C 0.008 3.992 21 N -0.917 5.917 22 Si 0.960 3.040 23 H -0.259 1.259 24 H -0.281 1.281 25 H -0.286 1.286 26 C 0.124 3.876 27 C 0.104 3.896 28 C -0.122 4.122 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.042 0.958 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.054 0.946 45 H 0.260 0.740 46 H 0.059 0.941 47 H 0.079 0.921 48 H 0.058 0.942 49 H 0.111 0.889 50 H 0.090 0.910 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.896 -1.113 22.569 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C -0.011 4.011 4 C -0.097 4.097 5 C -0.160 4.160 6 C -0.014 4.014 7 N -0.318 5.318 8 C 0.308 3.692 9 O -0.427 6.427 10 C 0.281 3.719 11 O -0.441 6.441 12 N -0.319 5.319 13 C -0.017 4.017 14 C -0.165 4.165 15 C -0.140 4.140 16 C 0.015 3.985 17 H -0.001 1.001 18 C -0.569 4.569 19 H 0.085 0.915 20 C -0.191 4.191 21 N -0.556 5.556 22 Si 0.785 3.215 23 H -0.182 1.182 24 H -0.207 1.207 25 H -0.213 1.213 26 C 0.002 3.998 27 C -0.018 4.018 28 C -0.161 4.161 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.072 0.928 37 H 0.126 0.874 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.059 0.941 42 H 0.127 0.873 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.098 0.902 48 H 0.077 0.923 49 H 0.129 0.871 50 H 0.108 0.892 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.957 -0.588 22.082 25.610 hybrid contribution -0.147 0.162 -1.858 1.871 sum -13.104 -0.426 20.224 24.102 Atomic orbital electron populations 1.22879 0.79879 1.03611 1.00619 1.87833 1.21028 1.28674 1.95555 1.22608 0.93109 0.84477 1.00883 1.21110 0.93346 0.97042 0.98213 1.21900 0.93578 0.96434 1.04078 1.21972 0.95163 0.97824 0.86403 1.48244 1.37967 1.20569 1.25018 1.20109 0.80776 0.85298 0.82992 1.90737 1.53969 1.24376 1.73609 1.20670 0.81978 0.79958 0.89288 1.90795 1.54077 1.63905 1.35368 1.48632 1.27047 1.39117 1.17109 1.22032 0.90284 1.03531 0.85898 1.21902 0.95663 0.99240 0.99656 1.21515 0.99004 0.99121 0.94408 1.18952 0.91255 0.94699 0.93587 1.00150 1.21510 1.18111 1.19765 0.97508 0.91524 1.25925 0.94876 0.96814 1.01478 1.70103 1.22979 1.36144 1.26347 0.85475 0.78368 0.78767 0.78863 1.18250 1.20660 1.21267 1.21929 1.00551 0.92223 0.85048 1.21913 0.94304 0.83168 1.02432 1.21795 0.93576 1.02611 0.98070 0.92807 0.94013 0.88841 0.91153 0.93922 0.88223 0.86906 0.92769 0.87415 0.89746 0.89929 0.87947 0.94076 0.87311 0.91272 0.92695 0.93131 0.92323 0.90246 0.92343 0.87053 0.89170 0.93628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -6.96 10.21 -148.98 -1.52 -8.48 16 3 C 0.07 0.91 5.32 71.98 0.38 1.29 16 4 C -0.08 -1.12 2.39 -10.77 -0.03 -1.14 16 5 C -0.12 -1.68 5.36 30.68 0.16 -1.51 16 6 C 0.11 1.89 6.42 86.36 0.55 2.45 16 7 N -0.58 -14.99 2.98 -821.30 -2.45 -17.44 16 8 C 0.53 18.98 5.60 87.27 0.49 19.47 16 9 O -0.55 -22.21 16.33 -3.25 -0.05 -22.27 16 10 C 0.50 21.89 5.47 87.27 0.48 22.37 16 11 O -0.56 -30.12 16.52 -3.27 -0.05 -30.17 16 12 N -0.59 -24.21 2.97 -820.47 -2.44 -26.65 16 13 C 0.10 3.19 6.32 86.36 0.55 3.74 16 14 C -0.13 -4.01 6.08 30.67 0.19 -3.83 16 15 C -0.10 -3.95 5.11 30.62 0.16 -3.79 16 16 C 0.03 1.74 2.25 -11.46 -0.03 1.71 16 17 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 18 C -0.53 -28.88 8.57 25.60 0.22 -28.66 16 19 H 0.07 3.46 7.74 -2.91 -0.02 3.44 16 20 C 0.01 0.47 5.30 84.66 0.45 0.91 16 21 N -0.92 -55.92 11.39 21.45 0.24 -55.68 16 22 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 C 0.12 6.08 5.41 86.36 0.47 6.55 16 27 C 0.10 2.33 6.33 86.22 0.55 2.87 16 28 C -0.12 -2.46 5.25 30.53 0.16 -2.30 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.08 1.77 7.03 -2.38 -0.02 1.75 16 39 H 0.08 2.35 6.23 -2.39 -0.01 2.34 16 40 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.08 4.70 5.11 -2.38 -0.01 4.69 16 48 H 0.06 1.70 6.31 -2.39 -0.02 1.69 16 49 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 50 H 0.09 1.76 7.79 -2.39 -0.02 1.74 16 51 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -77.86 398.54 2.65 -75.20 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.90 Total: 17.76 kcal Atomic # 6 Polarization: 15.68 SS G_CDS: 6.00 Total: 21.68 kcal Atomic # 7 Polarization: -95.12 SS G_CDS: -4.64 Total: -99.76 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -1.63 Total: -60.92 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Total: -77.86 2.65 -75.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327335162.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.169 kcal (2) G-P(sol) polarization free energy of solvation -77.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds